Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->ANAC58     --------->ANAC58    ------->MYC3        ------>ZmHOX2a(1)    ------->MYC2   <---------HSFB2a(1)    <-------PIF5   --------->HSFC1(2)    ------->PIF5   <---------HSFC1(2)                                          ---------->DOF2    <-------MYC2   --------->HSFB2a(1)                         ------>ZmHOX2a(1)   <----------ID1    <-------MYC3  ------->TEIL                     --------->At4g35610  --------->LBD16 ------>ANAC46   <---------ARR14(2)                <---------At4g35610--------->TOE1(2)     <-------- -----ALFIN1     --------->ARR14(2)               --------->ALFIN1  --------->GLK1(2)      ---------- -->ANAC58     <---------MYB52(2)               <---------ANAC58    <---------ARR14(2)     <--------- -->ANAC58  <----------ID1<---------ANAC46      <---------ANAC58    --------->ARR14(2) ---------->DOF2   acagcacgagcaatacgacgaacctccttcgtgtaagacccagtatcgatgagtgctgcaatctccttcaaatctgggaaacaaagaaacaaagcgtcaa  7004000                      --------->YAB1                     <---------YAB1                   <---------ICU4--------->HSFB2a(2)        <-----------GT1                   --------->YAB1--------->HSFC1(1)--------->ARR14(2)                  --------->ICU4 <---------HSFB2a(2)<------ZmHOX2a(2) ---HVH21         <---------ATHB12                 <---------ARR14(2)                          ------ ->GT1            <---------ATHB51                 --------->AGP1                      ----------->GT1 -ID1           --------->WOX13(1)      ---------->DOF2  <---------ARR11(3)<---------ZAT6--------->ARR11(3)   aacccagaagaaacttagcaattatgaaaacagttcgagaattaaagcattcagatcgagatttactctgcatagtagaggtagaagaagagataatcga  7004100                                         <---------YAB1                                  ------>ZmHOX2a(1)                              ------->PIF5                             --------->ANAC58                             --------->ANAC58                             --------->bZIP60(2)                             --------->ANAC46                                                    <---                       --------->At4g35610                                                       ----         <-------GAMYB <---------At4g35610                                              <---------TOE2(3)        --------->ALFIN1   <---------ALFIN1                          ---------->DOF2    <---------TOE1(3) --->ATHB12     <---------YAB1<-------PIF5<---------ICU4  <---------MYB52(1)      <---------TOE2(3)   ttgagaaggggtgttgttatctttcatctccacgtcctgagtcatctttgcacaaatctcgttactcttcacaaagacaaaaacaaggttagggtttttg  7004200                                --------->ARR14(2)                                <---------ARR14(2)          <---------MYB52(2) --------->ANAC46     --------->ANAC58        --------->ANAC58                      ---------->DOF2     --------->ANAC58        --------->ANAC58               <---------WRKY18(1)             <-------- ------HSFB2a(2)        --------->GLK1(1)                  --------->WRKY38(1)              --------- ----->HSFB2a(2)<---------DEAR3(1)                --------->MYB46(3)             ---------->DOF2   cagaagtatgcaactaagccggtgagatttcaaggaaccgattgaagtttcaaccaatttgttgactgagaaagacggagagataaagacagagagctta  7004300                                                                     <---------ZAT2                                                                     --------->ZAT2                                                                     ----------->RAV1(2)                       <------NtERF2                                 --------->At4g35610                      ------>NtERF2                               <---------At4g35610                     <---------LBD16                             ================RAV               <---------GLK1(1)                                 <-----------RAV1(1)               --------->GLK1(1)                            --------->ZAT2               --------->ARR14(2)                           --------->At4g35610                     <               <---------ARR14(2)                           <---------ZAT2                          =           --------->ANAC46    ----------->TGA1        <------ZmHOX2a(1)                            <         --------->MYB52(1)    ----------->HVH21      <----------ID1 <---------At4g35610 ------>ZmHOX2a(1)       ---------->DOF2--------->LBD16   <---------WOX13(1)  <---------At4g35610         --------->TOE2(3)   ----------->GT1  <---------LBD16  <---------YAB1  <---------TOE2(3)              <----------DOF2 - -At4g35610--------->ANAC58 --------->DAG2  <------ZmHOX2a(2) ----------->HVH21<----------DOF2    <-- >At4g35610--------->ANAC58---------->DOF2  ==================HOX2a_HOX2a   --------->GLK1(2)    <---   ctaaatcgataaaacggaattcgccgggagaaagtgacgatgatggatcagatttaaggacgagctgatgctgctgagactcttttctttcctaagtatt  7004400           --------->ANAC46         *TSS <---------------AGL15 --------------->AGL15                                                  --------->ARR11(3) <----------DOF2                                        ----------------->AG    --------->REM1(1) -----------------AGL3                                <-----------GT1   <---------ARR11(3)      <---- =========================================================================MADS_MADS   --------->ATHB12 -----------------AGL1 ----------->GT1            <----------DOF2      <---------CCA1(2)        ----- -------------->AGL15 --------->DAG2              <---------DAG2     --------->AHL20(2)       ------- ---------GT1        ---------->DOF2       --------->ANAC46          <---------AHL20(2)<------------CBF --------GT1  ----------->RAV1(1)<----------DOF2<---------At4g35610<-----------TBP   <---------YAB1   ttcctttttttggacacaacaaaaaaagtatatttctttttgttcaagacagcttttttccatattagtatttatatcttctacattacgattgagcaac  7004500                               ----------->RAV1(2)                              --------->LBD16                             --------->ANAC46                            <---------LBD16                            xxxxxxxxxxxxxxxx>smallRNA(s)                           xxxxxxxxxxxxxxxx>smallRNA(s)                         xxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxx>smallRNA(i)                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                      --------->ICU4                     xxxxxxxxxxxxxxxx>smallRNA(s)                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxx>smallRNA(i)                     xxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(fl3)                   <--------Pxxxxxxxxxxxxxxxx>smallRNA(s)                   =============================MYC_MYB                 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                 xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                 xxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <---------ZAT6------>NtERF2                xxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                xxxxxxxxxxxxxxxxxxx>smallRNA(l2)               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               xxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxx>smallRNA(l2)              xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ZAT14xxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------LBD16     xxxxxxxxxxxxxxx>smallRNA(le3)             --------->PCF5     xxxxxxxxxxxxxxxx>smallRNA(le3)            <---------ANAC46     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->O2     xxxxxxxxxxxxxxxxxx>smallRNA(se3) =======================================MYC_MYB     xxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->TGA1a                ------->GAMYB     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <------NtERF2     <------NtERF2     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ALFIN1   --------->LBD16     xxxxxxxxxxxxxxxx>smallRNA(se3)   <---------O2             --------->ANAC46     *TSS xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->LBD16     xxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------TGA1a       xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)----------->HVH21<---------LBD16     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ATERF1(1)--------->ANAC46     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ALFIN1 xxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------LBD16    <------ZmHOX2a(2)     xxxxxxxxxxxxxxxx>smallRNA(i)  ----------->HVH21  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     xxxxxxxxxxxxxxxx>smallRNA(s) <-----------HVH21  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ============================================MYC_MYB  --------->ARR14(2)    <----------DOF2    <-------GAMYBxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<------NtERF2--------->LBD16  <---------DAG2 -----MYB52(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<------NtERF2------>NtERF2<-----------GT1 ---->MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)--------->LBD16 --------->MYB52(1)<---------MYB46(3) ---->RAV1(1)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ATERF1(1) <---------ATERF1(1)   aaatgtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtggcccgggttcgatccccggcaacggcgattaactttttggttactagtttt  7004600                                 <---------------------WRI1                            <----------DOF2                         --------->ANAC58                         --------->ANAC58                        --------->SPL7                        <---------TOE1(2)                         ----------->GT1                        <---------ZAT18                           <---------ANAC46                      <---------SPL7                              <------MYB83                     <---------ANAC58                             <------MYB46(1)                     <---------ANAC58                   --------->At4g35610                    --------------->AtSPL3            ------->GAMYB                          <-------MYC3                    <---------------AtSPL3           --------->MYB46(3)     <----------DOF2  ------->MYC3                    --------------->AtSPL8      --------->ANAC46 --------->MYB59  ---------->ID1   gtttggacctctctcacttattttcgtacgctttcttcgaatagcccaaaacacaaccagcgcaagttgggttaatttctttttgtctcaaaacacgttg  7004700                              <---------AHL20(2)                            <---------YAB1                           <---------AHL20(1)                          <---------ICU4                         --------->ICU4                  <---------YAB1                                                     --------->MYB52(1)                <-----------GT1                                                    --------->MYB46(3)               <---------AHL20(2)                                          --------->CCA1(2)               --------->AHL20(1) <---------ANAC58                    --------->At4g35610               --------->AHL20(2) <---------ANAC58              <---------AHL20(2)------->TEIL              --------->AHL20(2)<-----------GT1              --------->AHL20(1)   <<<<<<<<<<<<<<<<<LFY          <---------YAB1 <---------YAB1          <-----------RAV1(1)  <---------At4g35610     -------        <-----------GT1--------->YAB1           <---------TOE2(3)    --------->MYB52(1)     ---------        --------->YAB1 <---------ICU4      <----------DOF2   <---------ARR11(3)--------->ANAC46   gaacttggaattacaattttattattcattattttttcttgttatctttttatgttgttagaatatataatcaactgatatacgaaccaatggaaaaagg  7004800                                        <------NtERF2                                       ------>NtERF2                                      --------->DEAR3(1)                   <---------ANAC58  --------->DEAR3(2)             <---------MYB46(3)      --------->ORA47(2)    ---------->DOF2<---------ANAC58--------->ANAC46 -->DAG2    <--------P     <---------ZAT6      <---------AHL20(2)               ---------->DOF2 ->DOF2    <-------GAMYB --------->MYB52(2) ------->TEIL         --------->GLK1(1)  <----------ID1   caatgccaaagggggttgtttacttgttagtgtcaatacgccgacgaatgtaattggagtcaaacaaatatccaaaactcaaaaaagagacaaaactaga  7004900  Previous    Next  AGI:  At1g20200.1    Description:  EMB2719 (EMBRYO DEFECTIVE 2719). Identical to Probable 26S proteasome non-ATPase regulatory subunit 3a [Arabidopsis Thaliana] (GB:Q9LNU4;GB:Q8L852); similar to 26S proteasome regulatory subunit S3, putative (RPN3) [Arabidopsis thaliana] (TAIR:AT1G75990.1); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:Q06364); similar to unnamed protein product [Vitis vinifera] (GB:CAO47402.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61954.1); contains InterPro domain PCI/PINT associated module (InterPro:IPR013143); contains InterPro domain Proteasome component reg Range:  from: 7001192    to: 7004409    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20210.1    Description:  pre-tRNA. tRNA-Asp (anticodon: GTC) Range:  from: 7004505    to: 7004576    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g20220.1    Description:  nucleic acid binding. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G76010.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73522.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) Range:  from: 7004870    to: 7007642    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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