Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                ---------->DOF2                                                <-----                        <------NtERF2                                               --------->DAG2                     ------>NtERF2     <---------ALFIN1                      ----------->GT1   <-----                   <---------RAP2.6(2)<---------ABI4(2)                    ---------->DOF2  <--------                 <---------ARR14(2) --------->PCF2         ----------------->AG    ---------->DOF2                 --------->ARR14(2)<-----------TCP11(1)--------->YAB1    --------->YAB1   <---------ANAC58         --------->GLK1(2)  <---------ZAT14 <---------MYB52(1)        --------->WOX13(1)  <---------ANAC58   aaaacacagagaaactgaagttcggccgagtgaagaaaggcccaccgatagtctctataatcccaaataagtctatcaaaagtaaaaaagttccgttccg  6994900                     --------->TOE2(3)                   ------->TEIL       <---------ANAC58       <---------ANAC58                                            <------ZmHOX2a(1)       <---------ANAC46                    --------->AHL20(2)    <---------TOE1(3) ------MYB52(1)   <---------CCA1(2)        <---------AHL20(2)    <---------TOE2(3) ----ANAC58   <----------DOF2       <-----------GT1          <----------DOF2         <----------DOF2< ----ANAC58   <---------ANAC46 --------->ZAT14            ----------->GT1           <---------DAG2--- -MYB52(1)--------->ZAT18      <---------ZAT14       --------->AHL20(2)<----------DOF2          <----   ttcttgtttgggtgtgctttgtatcttagtgagtgtagaaaccatttaaaaaaaaaaaaatggttttaaggaactttgcatactcacctttcgatttgag  6995000                                    <----------ID1                               ---------->DOF2                           --------->At4g35610                      --------------------->WRI1   <---------YAB1     <----------DOF2 ---------MYB52(1) --------->ARR11(3)                                                             --- -------->GT1--------->YAB1<---------At4g35610                          --------->AtLEC2          --- -----At4g35610    <---------ARR11(3)                     ---------->DOF2                       <----   cagttatttttctaatgaaaatgtctttgagcttaaagaagacaaacacttaagaaaaccgaaagagactaatcttgcaaaattcttctatagagaaacc  6995100                        <---------ANAC58                 <---------ANAC58                 <---------ANAC55(1)        <---------AHL20(2)                 <---------ANAC58   <---------ANAC58                 <---------ANAC46   <---------ANAC58       <---------YAB1   <---------ANAC58    --------->AHL20(2) --->MYB83       <---------ANAC55(2)<---------bZIP60(2)                   <---------ZAT6 --->MYB46(1)    --------->ANAC55(2)<---------ANAC46           ------->TEIL--------->YAB1        ---- -----MYB59     <---------TOE2(3)<---------ATHB12           <---------ATHB12           <----------DOF2   aaactatagatgatagtttacgtatgacttgatcaatgacttgggtttaaatgttaagaacaatgaatttgggctagtcataaactagccttttaaaaac  6995200                                                                                                    -                                                                                                   <x                                                                                                   <-                                                                                                  ---                                                                                                <xxxx                                                                                               ------                                                                                           <xxxxxxxxx                                                                                          <---------LBD16                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               --------->LBD16 <-----                                                                               ------>NtERF2  <xxxxxx                                                                              <---------ANAC46-------                                                         --------->AHL20(2)   --------->LBD16 xxxxxxx                                                         --------->AHL20(1)   <---------LBD16 <------                                          <---------AHL20(1)                 <---------LBD16  <------                                          --------->AHL20(1)      --------->DAG2<xxxxxxxxxxxxxxxxxxxx                                          --------->AHL20(2)     ---------->DOF2<------NtERF2<xxxxxxx         ----------->GT1                  <---------AHL20(2)  --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)    <-----------RAV1(2)        ---------->DOF2          --------->YAB1   --------->At4g35610---------  ----------->RAV1(1)--------->ANAC58    <---------AHL20(2)   --------->YAB1------>NtERF2<xxxxxxxxxxx ------>DOF2         --------->ANAC58    --------->AHL20(2)--------->YAB1<---------At4g35610<xxxxxxxx   aaagccccagatagaaatatgctaagcccttcttaaagcccaaataaattcaattcaaaaataataaaaaagctccgatgccgggaatcgaacccgggtc  6995300                               --------->ANAC58                               --------->ANAC58                               --------->ANAC46                             <xxxxxxxxxxxxxxxsmallRNA(fl3)                             <xxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxsmallRNA(i)                            <xxxxxxxxxxxxxxxxsmallRNA(s)                            <xxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxsmallRNA(le3)                            <---------SPL7                           <xxxxxxxxxxxxxxxxsmallRNA(i)                           <xxxxxxxxxxxxxxxxsmallRNA(s)                           <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxsmallRNA(i)                          <xxxxxxxxxxxxxxxxsmallRNA(s)                          <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                         --------->At4g35610                         <xxxxxxxxxxxxxxxxsmallRNA(i)                       --------->MYB46(3)                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    ------>ZmHOX2a(1)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                    <xxxxxxxxxxxxxxxxsmallRNA(s)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <---------GLK1(1)               --------->GLK1(1)              <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)              <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxsmallRNA(se3)              --------->ARR14(2)              <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------ARR14(2)          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxsmallRNA(le3) --------LBD16<---------ARR11(3) -------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(fl3)--------->SPL7 --->GLK1(1)  --------->ARR11(3) xxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxsmallRNA(s)--------->ARR11(3) xxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxsmallRNA(si3)<---------ARR11(3)      <---------GLK1(2) ----GLK1(1) <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -->ARR14(2)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(le3)                     <<<<<<<<<SARD1 ---ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(s)--------->ARR14(2)            <---------AHL20(1) -----HVH21<xxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------YAB1          --------->ARR11(3) xxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            ----------->TBP xxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->YAB1                   < >LBD16<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) *TSS<------------CBF   --------->AHL20(2)             --- xxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------AHL20(2)        <-------TEIL xxxxxxxsmallRNA(le3)--------->MYB52(1) <---------ARR14(2)    ------------>CBF <<<<<<<<<CBP60g  -----   tcctgggtgaaagccagatatcctaaccgctggacgacatcggattttgttattgatataaactttcaattatatattccaaatttcattcgagtttcat  6995400 --------->YAB1           <---------TOE2(3) ---------ATHB12       --------->ARR11(3)            <-------MYC3 ------>WOX13(1) --------->CCA1(2)                   ------->MYC3  <---------ICU4     <----------DOF2 ------->CBF---------->DOF2                --------->ALFIN1--------->ICU4            <---------DAG2<-   caatcatagaaatagaaagatgtgagataatgttttagtaatacagtgaggcaaacgtgtaatgaacaagaattacacacttgtatacctttttttttgg  6995500                                                    <-------TEIL                              <------        ----------->GT1                          ----------->GT1--------->ZAT14 --------->AHL20(2) --------YAB1                                   <---------------AtSPL8          <---------AHL20(2)<--   tatcaatgtgaagtaaattctatatacttaaaaccaagtatatgtataatatggtacatattgaacttcactaggtagtcattttattcaaactccatta  6995600                                                <---------ALFIN1                                               --------->At4g35610                                       <---------DOF5.7(2)     --------->ICU4          --------->YAB1    <---------At4g35610   <---------ICU4     ------->TEIL<---------TOE2(3) <-------GAMYB   --------->ATHB12--------->ANAC58  --------->DOF5.7(2) ---MYB52(1)       --------->ANAC46 --------->TOE1(3)        ---------->DOF2 -------MYB52(1)   --------->ANAC58 --------->TOE2(3)       <---------WRKY45                 <-------   gttagtcattagtttgaatacacgaacttaaaaataaacgttaacattcagcaccgttgtagtcaaagtgaaacaagggcatgagattagttattgtcat  6995700            <---------AHL20(1)            --------->ARR11(3)            --------->AHL20(1)            <---------ARR11(3)           --------->CCA1(2)          ---------->DOF2                        <---------WRKY18(1)      <---------MYB52(1)   <-------TEIL                       ---------->ID1--------->WRKY12     ----     --------->TOE1(3)    --------->AtLEC2                   <-----------GT1--------->WRKY38(1)------     --------->TOE2(3)--------->AHL20(2)            <---------ANAC46    <-------TEIL      ----------- --YAB1   --------->ARR11(3)     ----------->GT1  ------>NtERF2 <----------DOF2      --------->YAB1 -   accaaaacgttagatatatttcaattacatgcatgcagtttaaagaagagggcgacttgtgtttttctttttgatacattgacccattcatattgcaaaa  6995800  Previous    Next  AGI:  At1g20170.1    Description:  pre-tRNA. tRNA-Glu (anticodon: TTC) Range:  from: 6995273    to: 6995344    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version