Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ---------->ID1                --------->At4g35610                                 <---------AHL20(2)          --------->YAB1       <---------AHL20(2)                              --------->AHL20(1)            <---------YAB1        --------->AHL20(2)    <---------AHL20(2)        <---------AHL20(1)    --------->YAB1 <---------ARR11(3)   <---------AHL20(2)         <---------ARR11(3)    <-----------GT1--------->ARR11(3)   --------->AHL20(2)         --------->ARR11(3) --------->YAB1   --------->RVE1(1) -----ANAC46  <-----------GT1<---------AHL20(2) <---------AHL20(2)--------->CCA1(1)             <----   gtgtattaatttgatttaactaattcgataaatatttttttttggtgtttttaataaccattttgataatatctgatgacaaaattaaaaaaaacatttt  6948600                                   <---------TOE2(3)                             --------->ICU4                             <---------YAB1                           -------->HAHB4                           -------->ATHB1                           <--------HAHB4                           --------->ATHB51                                        --------->AHL20(2)                           <---------AHL20(2)                                     --------->AHL20(2)                           <---------ICU4                                     <---------AHL20(2)                           --------->YAB1           --------->YAB1            --------->AHL20(2)                          <---------ATHB51      <---------AHL20(2)       <---------YAB1 <---------ANAC55(2)                       --------->AHL20(2)       --------->AHL20(2)       <---------AHL20(2)                       <---------AHL20(2)     --------->ANAC55(2)        --------->AHL20(2)                      --------->AHL20(2)      --------->ANAC58          --------->AHL20(2)                      --------->AHL20(1)      ----------->GT1           <---------AHL20(1)               <-----------GT1  <---------YAB1<---------ANAC55(2)       --------->AHL20(1)        --------->AHL20(2)<---------YAB1      --------->ANAC58 --------->TOE2(3)  <---------AHL20(2)      <----------DOF2 <---------AHL20(1)    <--------P     <---------AHL20(2)--------->AHL20(2) <-----------GT1      <---------AHL20(2) <---------TOE1(3)--------->AHL20(2) --------->YAB1 -----YAB1  --------->YAB1--------->ICU4 <---------TOE2(3)<---------AHL20(2) <---------AHL20(2)   catttacgctttaaatataacaaatttaattattattaatgttaaggtaagtaattagaattaaatgttaacaatataattaaaataaataagtaaacaa  6948700               <---------AHL20(2)               <-----------GT1                                                           --------->ANAC58           --------->ATHB51           <---------YAB1                                     --------->ANAC58           <---------ICU4           <---------AHL20(2)                          <---------AHL20(2)           <--------HAHB4          --------->AHL20(1)                    <-----------GT1--------->DAG2           -------->ATHB1          <---------AHL20(2)                   --------->AHL20(2)  ---------          --------->ICU4           --------->AHL20(2)            --------->TOE2(3)     ---------->DOF2    --------->MYB52(1)             <---------AHL20(1)          --------->GLK1(2)--------->AHL20(1)  --------->MYB46(3)            --------->ATHB51              --------->YAB1    --------->ARR11(3)  <---------MYB52(2)            --------->AHL20(2)           <---------ATHB12   <---------AHL20(1) --   aataacaaacgaattattaacttgagagtcagaataatttattagtggagaacagatggaccaataatctaaatttaactaatatatagaaaagcaacat  6948800                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                   <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                                   <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                   <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                                   <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                       <---------ALFIN1      xxxxxxxx                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                       --------->ANAC46    <---------ARR14(2)                                                                       --------->ANAC58    --------->ARR14(2)                                                                       --------->ANAC58  <xxxxxxxxxxx                                                                     <---------ALFIN1 <xxxxxxxxxxxxxx                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    --------->TOE1(2)<------ZmHOX2a(1)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                   <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <---------ANAC58      <xxxxxxxxxxxxxxxxxxx                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxx        ----------->HVH21                                  <---------ANAC46      <---------TOE1(1)        ------>ZmHOX2a(1)                                  <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AHL20(1)                                     --------->ALFIN1<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->AHL20(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ANAC46 <---------AHL20(2)                                <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------TOE2(1) <---------AHL20(1)                        <---------ARR11(3)      --------->DEAR3(2)<xxxxxxxxxxxxxxx <---------ARR11(3) <XXXXXXXXXXXXXXXXXXXXMIR426 <-----------HVH21 ------->TEIL  <xxxxxxxxxxxxxxxxxxxx --------->ARR11(3) --------->ZAT18        --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->RAV1(1)        --------->ALFIN1    ---------->DOF2<---------TGA1a<xxxxxxxxxxxxxxxxsmallRNA(s) ----->TEIL      <---------ANAC46      =========================bZIP_DOF------>NtERF2<xxxxxxxxxxxxxxx   gaatatattcctgaccttggtgtggacaaattttccaaaaaaaaagataatgtcagaagtggggtttgaacccacgccctcttacgaggaccagaacttg  6948900                  <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->AtMYB61     =================HOX2a_HOX2a             <---------ZAT18        ==================HOX2a_HOX2a            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <------NtERF2                 <---------YAB1      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <-      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              --     ------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)                                                     <-  <---------ATERF1(1)               ------>ZmHOX2a(1)                                           ----- xxxxxxxsmallRNA(se3)         <---------ANAC58 ------>ZmHOX2a(2)                               ------ xxxxxxxsmallRNA(se3)         <---------ANAC58<------ZmHOX2a(2)                                <----- xxxxxxxsmallRNA(si3)      ===========================HOX2a_HOX2a                              ------ xxxxxxxsmallRNA(se3)      ------>ZmHOX2a(1) --------->ARR11(3)                                <----- xxxxxsmallRNA(le3)        ==========================HOX2a_HOX2a                               ------ xxxxxxxxxxxxxxx>smallRNA(si3)<---------bZIP60(2)                                              ------ xxxxxsmallRNA(fl3)        ----------->TGA1  <---------AGP1                                    <----- xxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <------ xxsmallRNA(l2)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->YAB1               <-----------HVH21 xxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(si3)    --------->AHL20(2)               <---------ZAT6-- xxxxxxsmallRNA(se3)     ----------->RAV1(2) <---------ARR11(3)               --------->ATHB12<------ xxxxxsmallRNA(si3)      <---------ICU4     --------->RVE1(1)          --------->GLK1(2)      ------- xxxxxsmallRNA(se3) ------>NtERF2 *TSS   ---------->DOF2<-------TEIL  <---------ARR14(2)  -----------   agtctggcgccttagaccactcggccatcctgacgttcctgattaaagatctcataaattcatcatatagaagaatcggatgatttagtgtcaccaatta  6949000        ------>MYB46(1)      <---------MYB59   <-----------GT1 --------AHL20(1) ------->AHL20(1) --------AHL20(2) ---->AHL20(1) -->ATHB1                                      <------ZmHOX2a(1)                  ------>ZmHOX2a(2) ----AHL20(2)                        <---------LBD16                            --------->ARR11(3) --->YAB1                            --------->LBD16                            <---------AGP1 ---HAHB4                           <---------LBD16                             --------->AGP1 --->AHL20(2)                     *TSS   <---------ARR14(2)                     <---------ARR11(3) --->ATHB51            <------------CBF  --------->ARR14(2)                     <---------ARR14(2) ----ICU4              --------------------->WRI1                     --------->YAB1 ---ATHB51         --------->ANAC55(2) <------NtERF2                  <---------ICU4 ------->AHL20(2)  <---------ANAC55(2)------>NtERF2                  <---------YAB1         <-------- ---ATHB12  ---------->DOF2     ------->TEIL<---------HSFB2a(2)    --------->YAB1<------ZmHOX2a(2) -->ICU4------>MYB83  --------->ATHB12--------->LBD16       --------->ANAC58    --------->ARR14(2) ->CBF<---------MYB46(2)<---------WOX13(1) ------>ZmHOX2a(2)--------->ANAC58   <---------CCA1(2)    <   ttttattaccaaacaaaagacacttgattgaatgaatcgccgggatcgaggagattagtagtaagcacatcatcatcactcagatctagtagttccacaa  6949100                                                                                              -------                                                                                             <-------                                                                                           ------>MYB46(1)                                                                     --------->SPL7        --------->MYB52(1)                                                                     <-------TEIL  ------>ZmHOX2a(2)-                                                                     <---------TOE1(2)     ------>MYB83                                                                     ------->TEIL <------ZmHOX2a(2) <                                                                    <---------SPL1(1)     --------->MYB55(1)                                                                    <---------MYB52(1)   <---------MYB111(1)                                                                   <---------SPL7--------->ARR11(3) <                                                                  <---------ANAC58--------->At4g35610                                                                  <---------ANAC58--------->CCA1(2) <                                                                 --------------->AtSPL3  <---------MYB46(2)                                                               <---------ARR14(2)--------->ARR14(2) -                  ----------->GT1                              --------->ARR14(2)<---------AGP1    <-              <---------WRKY18(1)                              ------------------>SPL14------->TEIL<-             --------->WRKY45                                 --------->ATERF1(1)--------->AGP1------             ----------->HVH21                              <---------ANAC58     <---------ARR11(3)--             --------->WRKY38(1)                            <---------ANAC58     <---------ARR14(2)--             --------->WRKY12                              <------NtERF2        --------->GLK1(1)<---            --------->DOF5.7(2)                          --------->ALFIN1       <---------GLK1(1)----          <---------MYB46(3)                             <---------DEAR3(1) --------->LBD16-------->P          --------->MYB52(2)                         ====================================HOX2a_HOX2a-      <---------MYB46(3)               ----------->GT1--------->ALFIN1--------->HSFB2a(1)--------->AtMYB61 -HSFB2a(2)<-------GAMYB             ----------->GT1 =====================================HOX2a_HOX2a <<<<<<<<<<<<<<<<LFY              ---------->DOF2    <------ZmHOX2a(1)<---------HSFB2a(1)<---------MYB59   actcacattgggtcgttgaccagaaaaacacacagagaaaggagaaaaacatggaggagttggcgcatccgtacgttccgagagatctgaacctacccgg  6949200       ------>MYB46(1)       ------>MYB83      --------->WOX13(1)   ------->TEIL -->LBD16--------->YAB1 --LBD16 --------->TOE2(3) -------->ANAC58 ---------ANAC58 ---------ANAC55(2) ---------ANAC58 -------->ANAC55(2) --------------AtSPL3 ------TEIL                                                                    <---------ANAC58 --->LBD16                                      --------->ARR14(2)             <---------ANAC58 ------------->AtSPL8                           <---------ARR14(2)        ----------->RAV1(2)      -- ------------->AtSPL3                    =========================================MYC_MYB          <- ------ARR14(2)                          ------->TEIL                   --------->O2             <--- ----->ARR14(2)                          -------->P       --------------------->WRI1          <------ -------->ANAC58         ------>ZmHOX2a(1)      <-----------ARR10       --------->TGA1a  <---------MYB52(1)   atacgtaccaatctcaatgtcaatgtcctccatcgtctctatctacctcggttcttccctccttgttgtctccctcgtctggcttctcttcggtatttcc  6949300                                                                                        >>>>>>>>>>WRKY6     <---------ALFIN1                                                                   >>>>>>>>>>WRKY11 ------->ANAC46                                                                        --------->WRKY12 --------ALFIN1    <---------HSFB2a(2)                        --------->DAG2      ---------->DOF2 ------ALFIN1      --------->HSFB2a(2)               ----------->GT1      <-----------GT1  <---------MYB59 -----GT1    <---------CCA1(2)              <---------At4g35610      ------>ZmHOX2a(2) --------->WRKY38(1)   cactccccctccctcatctctctcgaaacgttttaagttgaaattgaactgatggaagtaacaaaaattgatctatttactctgcaaagttgacccaatt  6949400                         <---------LBD16                   <------MYB83                   <------MYB46(1)                   --------->MYB52(2)                   <---------MYB46(3)                  <---------AtMYB61                 <--------P                <---------ANAC58                <---------ANAC58                                     <---------ZAT18               --------->MYB55(2)                                 <------MYB83               --------->ATHB12                                   <---------MYB46(3)               <---------MYB46(3)                                 <------MYB46(1)               <------MYB46(1)                                   <---------MYB46(3)               <------MYB83                                      <---------AtMYB61             <---------WOX13(1)                               --------->ALFIN1           --------->ATHB12        ---------->DOF2            <-----------RAV1(1)                  --          <---------YAB1<-----------RAV1(2)             <---------ANAC58                           <-        <---------At4g35610    <------ZmHOX2a(1)        <---------ANAC58                        <----   --------->GLK1(2)    <---------LBD16                 <---------ANAC46                 --------->YAB1   ctgagaattttgctgattggttggtttcagggaggaagaaagctaaacttgataagttgcttatgtgttggtggacattcactggtctcactcatgttat  6949500  Previous    Next  AGI:  At1g20040.1    Description:  pre-tRNA. tRNA-Leu (anticodon: CAA) Range:  from: 6948851    to: 6948934    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20050.1    Description:  HYD1 (Hydra 1). Identical to Probable 3-beta-hydroxysteroid-Delta [Arabidopsis Thaliana] (GB:O48962;GB:Q9SAQ8); similar to unnamed protein product [Vitis vinifera] (GB:CAO21915.1); contains InterPro domain Emopamil-binding; (InterPro:IPR007905) Range:  from: 6949034    to: 6950310    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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