Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                           --------->DAG2                                                       <---------ICU4                     ---------->DOF2                                                      <---------YAB1                  <---------WOX13(1)                                                    --------->YAB1                 --------->ICU4     <---------GLK1(2)          --------->TOE2(3)  <-------TEIL      ----------->GT1--------->ATHB12     --------->ARR14(2)   --------->ANAC46     <-------TEIL   <XXXXXXXXXXXXXXXXXXXXMIR2112-3P       -   taaactagattccctaaaacaaaacaatccacaacttcaattttgtatatacattcatcattttgcaaatgtggatatataggcattgattgaaaagtga  6942300                                                    <---------ANAC58                              <------MYB83          <---------ANAC58                              <------MYB46(1)     <---------ARR11(3)                             --------->MYB59      --------->ARR11(3)                            <--------P <---------ANAC46          --------->AHL20(2)             -----                           <---------MYB52(1)     --------->AHL20(1)                    <---------TOE2(3)                    <---------YAB1   --------->CCA1(2)        --------->YAB1          ---------->DOF2              <---------AHL20(2)---------->DOF2   <---------AHL20(1)                 <---------AHL20(2) -->GT1  <---------YAB1 <-----------RAV1(2)      --------->CCA1(1)           ----------->GT1    <---- ---------->GT1  --------->ICU4<------ZmHOX2a(1) --------->RVE1(1)         ---------->DOF2 ----------   aatggtaaaatatgatataattttgatcaggtaggaaagttatgggtgataatatcttgtccaaaaataaaacattgtaaagtatatttaaaggaaaggg  6942400                                              --------->AHL20(2)                                              <---------AHL20(2)                                             --------->YAB1                                             <---------AHL20(2)                                             --------->AHL20(2)                                          --------->YAB1                                         <---------AHL20(2)                                 <---------ZAT18                  --------->bZIP60(2)    <---------YAB1                                             -                  --------->ANAC46   <----------DOF2                  <---------ANAC46           <--- ---->ZAT18     <---------ALFIN1<---------ANAC46           <---------YAB1                        <--- -----ZAT18  <---------WRKY18(1)<---------ANAC58     <---------AHL20(2)                  --------->TOE2(3) >DOF2---------->DOF2           <---------ANAC58     --------->AHL20(2)           --------->CCA1(2)--   cccttgtataaagcttgaccacatcatatttttggtgtgctttataattaaaattttaaatacaattggattgtgtctaatgagatttgaaacttaattg  6942500                                                               --------->AHL20(2)                                                           ----------->GT1                                                      -------->HAHB4                                                      <---------ICU4                                                      --------->ATHB12            <---------HSFC1(1)                     --------->YAB1            <---------HSFB2a(2)      <---------ATHB12--------->ICU4            --------->HSFC1(1)  --------->ANAC58  <---------YAB1            --------->HSFB2a(2) --------->ANAC58  --------->AHL20(2)           <---------LBD16    ---------->DOF2     <---------AHL20(2)         <---------AGP1 --------->DAG2           --------->AHL20(1) -------->At5g28300    ---------->DOF2           <---------AHL20(1) ------ANAC46--------->LBD16--------->ZAT18      --------->AHL20(2)               ----------->GT1 ------TOE2(3)      --------->AHL20(2)--------->YAB1 <---------YAB1              <-------MYC3 --------->GT1     --------->AHL20(2)----------->GT1 <---------ATHB51            ------->MYC3   agggtaaaatagttctggaaaataaaaaagtgcaaagcaatgaaaaaacaatataattatggggttttaatataaaaaaaacatgtgttaaaacttatgt  6942600                               <---------CCA1(1)                               <---------RVE1(1)                                    --------->TOE1(3)                              <---------AHL20(1)                         --------->ANAC58       <----                              --------->ARR11(3)                      ------>ZmHOX2a(1)   ------->GAMYB                        --------->ANAC58                         <---------ANAC58   --------->TOE2(3)                        --------->ANAC58                  --------->CCA1(2)         --------->YAB1                 <---------AHL20(2)    ----------->GT1    <-----------TBP--------->ANAC58 --------->TOE2(3)           <---------ANAC46   <---------ARR11(3)         --------->ARR11(3)       <---------TOE2(3)           <---------ANAC58 --------->ANAC58       ---------->DOF2   --------->TOE2(3)   --------->MYB46(3)           <---------ANAC58 --------->ANAC58  <----------ID1     <---------ANAC58--------->MYB52(1)  <---------At4g35610   --------->ANAC46<------ZmHOX2a(1)<---------ARR11(3)    <---------MYB52(2)   tttgagttgattttcgtattttatacacacaagatatttagaggaaaaaaaacaaaagagatatatagcttcctcaagtcaaataacgataaccacaact  6942700         <---------ARR14(2)         --------->MYB46(3)         --------->ARR14(2)        --------->ANAC46         --------->ARR11(3)        --------->ANAC58         <---------GLK1(2)         --------->ANAC58         ------>ZmHOX2a(1)         <---------ARR11(3)      <---------ALFIN1 <---------ANAC58                                 --        *TSS                    --------->MYB46(3)<---------ANAC46                                 ==       ----------->ARR10   --------->TOE2(3)      <---------ANAC58              <---------YAB1     <- ------DOF2             <-----------GT1         --------->ARR11(3)<---------CCA1(2)    <----------DOF2   ttgatgaacgagatactctcttcttaaaacctcatccacccaaacacaaatgtcttgtaatccttctcttatctttctccttgtgattcctttttatatt  6942800                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                <----                                                       <-----------RAV1(1)                     <<<<<<    <---------RVE1(1)              --------->ZAT14    ------->TEIL                             <<<<<< ---->ZmHOX2a(1)                   <---------ZAT14 <---------YAB1       <---------CCA1(2)      <<<<<< =============================HOX2a_HOX2a  ------>NtERF2   <---------At4g35610                 <<<<<< --------At4g35610     ------>ZmHOX2a(2)  <---------ANAC46 --------->At4g35610             <---------   cctctgatattttctctcagtttgatctcatttgctctgcaatggcgactaccatgaatgctgctgtttctctcacatcttcaaactcttcttcttttcc  6942900 ------>LBD16                                                                         <---------ARR14(2) ----->ANAC46                                                                         <---------ARR11(3) ----->ANAC58                                                                 --------->DAG2 ----->ANAC58                 <-----------RAV1(2)                            ---------->DOF2      --- -----LBD16                  <------ZmHOX2a(2)          <----------DOF2   -------->HAHB4         ---- <<<<E2Fa                  <------ZmHOX2a(1)   <---------DAG2             --------->YAB1  ----------- <<<<E2Fd              ---------->DOF2       <-------TEIL                <---------YAB1 ------>ZmHOX2a(2) <<<<E2Fe            ===============HOX2a_HOX2a<----------DOF2           --------->ICU4<------ZmHOX2a(2) <<<<E2Fc            ------>ZmHOX2a(1)   <---------TOE1(3)             --------->YAB1 --------->ARR14(2) -DOF2             ----------->RAV1(2)   <---------TOE2(3)      --------->At4g35610   --------->ARR11(3)   cgctacaagttgtgccattgctcctgaaaggatcaggtttactaaggtactttataagcttttctcaactggataatgataaagtcaagatcccacaaaa  6943000     --------->ZAT14                                                --------->ANAC58     <---------ZAT14                                          <---------ANAC46    <---------ANAC46                                     --------->HSFB2a(2)       ---------->DOF2 ------>DAG2                         <---------TOE2(3)   <---------HSFB2a(2)    <---------ANAC55(2) ------>DOF2                         <---------TOE1(3) ----------->RAV1(2)      --------->ANAC55(2) >RAV1(1)      --------->GLK1(2)<----------DOF2   --------->YAB1    --------->ANAC58              ---   aaagttgtgtagtcgagagtctagagatgctctgcttttatggttttgctaataatcttctgggtcttgtaagtaacatgttaagtaaagttttggaatt  6943100                                                                               <------MYB46(1)                                                                          --------->ATHB12                                                           <---------ZAT6<---------YAB1                                                           <-----------RAV1(1)--------->MYB59                                                       --------->ZAT14 ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)  --------->ARR11(3)                                                 <---------ARR11(3)  <---------ARR11(3)             -                                                 --------->ARR11(3)  <---------ARR14(2)             <                                           --------->HSFB2a(2)       --------->ARR14(2)         <----          <----------DOF2               <----------DOF2<---------ZAT14<------ZmHOX2a(2)         <---- -------->GT1              <---------ICU4  <---------HSFB2a(2) --------->ATHB12<------MYB83  <-------   tggataaatgtgcttctgggttttctcaaatatgaccaaaaacttttggaagatcaatgtactgttgatgggatcttgattaggtctctctggttttgtt  6943200  Previous    Next  AGI:  At1g20020.1    Description:  ATLFNR2 (LEAF FNR 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding. similar to ATLFNR1 (LEAF FNR 1), NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding [Arabidopsis thaliana] (TAIR:AT5G66190.1); similar to chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum] (GB:CAB71293.1); contains InterPro domain Ferredoxin Reductase (InterPro:IPR015701); contains InterPro domain Flavoprotein pyridine nucleotid Range:  from: 6942708    to: 6945009    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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