Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->At4g35610                                                                              ----------->RAV1(1)                                                                            --------->At4g35610                                                                           --------->ANAC46                                                                       <-----------GT1                                                                    --------->YAB1                                                                    <---------ICU4                                                                    <--------HAHB4                                                                    --------->ATHB51 ----------DOF2                                 <---------ZAT14     -------->ATHB1 -----GLK1(2)                                   --------->ZAT14    <---------ATHB12 --->At4g35610                               <---------ANAC46      <---------ATHB51             ----- ----ZAT2----------->RAV1(1)          <---------ALFIN1             --------->ICU4         ---------->DOF2 ----At4g35610                       <---------At4g35610 <----------DOF2  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ttctttacgaacaacatcaagaacagcatcaataagttcagcaccttcagtgtaatgacctttagcccaattattaccagcaccagactgaccaaagaca  6940200                        ------>MYB46(1)                        --------->MYB52(1)                       --------->MYB55(1)                      --------->MYB46(3)                      <---------MYB59                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)                --------->At4g35610                --------->CCA1(2)               --------->ARR14(2)               <---------ARR14(2)               <---------AGP1               --------->GLK1(2)  <---------AGP1               <---------ARR11(3) <---------ARR11(3)               <-----------ARR10  --------->ARR14(2)                                       <---------               --------->ARR14(3) <---------ARR14(2)                                       <---------ARR14(2)               <---------ARR14(3)<---------CCA1(2)                                         <---------ARR11(1)               --------->ARR11(3)<---------ARR14(1)                                        ------->TEIL         --------->ANAC58       --------->LBD16                        --------->YAB1      --------->ARR14(2)         --------->ANAC58   <---------SPL7                         <-------TEIL   <-------PIF5     --       <------ZmHOX2a(1)------>MYB83------>ZmHOX2a(2)             <------ZmHOX2a(2)       <---------CCA1(2)       ====================================HOX2a_HOX2a            ==========================HOX2a_HOX2a       ===================================HOX2a_HOX2a            --------->ARR11(3)       <---------ARR14(1)       =================HOX2a_HOX2a<---------At4g35610           <---------ARR11(3)     --------->ANAC58       ================HOX2a_HOX2a--------->GLK1(2)              <---------ARR14(2)     --------->ANAC58    --------->YAB1----------->HVH21<------ZmHOX2a(2)             --------->AGP1   ------->PIF5   <--- ----->DOF2  ----------->ARR10<---------LBD16  --------->TOE2(3) --------->ARR14(2)  <------ZmHOX2a(1)   aagttatcaggacggaagatctgaccaaacggtccggatctgatactatccatagtaccaggctcaagatccataagaacagcacgaggaacgtatcttc  6940300                                               <---------ZAT14                                               --------->ZAT14                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                            --------->CCA1(2)                                           --------->ARR14(2)                                           <---------ARR11(3)                                           --------->ARR11(3)                                           <---------ARR14(3)         <---------ANAC46                                           --------->AGP1             --------->LBD16                                           <---------ARR14(2)        <---------MYB46(3)                                           --------->ARR14(3)        --------->MYB55(2)                                          <---------GLK1(1)         <---------LBD16                                          --------->GLK1(1)         --------->SPL7               ----                                    --------->ZAT2                <-----------HVH21              <---                                    <---------ZAT2                <---------SPL7           <---------         --------->ATHB12        ---------->DOF2         <---------ALFIN1              <---------ZAT2 ----------->HVH21              --------->WRKY18(1)     <---------ZAT14             <---------ANAC58 --ARR10<-------TEIL            <-------TEIL--------->At4g35610  <---------ANAC58   <---------ANAC46 --------->RAV1(2)     <---------------------WRI1      >>>>>>>>>>>>>>>>>LFY         <---------ANAC58 ------ALFIN1 <---------YAB1<-------TEIL ----------->ARR10       <---------ANAC58 ------>NtERF2<-----   cacctgaagcttcattgtaatagacattgatacgttcaagctggagatctgcagtgtctccactgtaacgtccggtggaatcgatgccgtgctcgtcgca  6940400                      --------->GLK1(2)                      ------>MYB83                      --------->ARR14(2)                               <---------ZAT6                      ------>MYB46(1)                       ------>ZmHOX2a(2)          <---------ARR14(2)                               <------ZmHOX2a(2)          --------->ARR14(2)          <---------WRKY18(1)  --------->GLK1(1)       <---------HSFB2a(2)           --------->WRKY45      <---------GLK1(1)           <---------MYB46(3)       --------->HSFB2a(2)           --------->WRKY12     <---------ARR11(3)        <---------ANAC46 ----->At4g35610      <---------ARR14(2) <---------ALFIN1 <---------ARR14(2)      --------->ZAT14 <-- ------At4g35610     --------->WOX13(1) --------->MYB46(3)--------->ARR14(2)      <---------ZAT14<--- --HVH21--------->LBD16       <---------At5g28300         --------->ARR11(3)      --------->REM1(2) ------RAV1(2)     --------->MYB46(3)--------->WRKY38(1) <------ZmHOX2a(1)     <---------ANAC46  ----   gatgacttcccagaacttggaaccaatctggttaccgcattgaccaccttgaatgtgaaggatctctctcattgtgttagtgtgtgtagtggttcacaag  6940500                                                                                                   <-                                                     <-----------GT1                       <---------ANAC58                                                  --------->YAB1         <---------ICU4    <---------ANAC46 ----ZmHOX2a(2)              ---------->DOF2 --------->At4g35610         *TSS              <---------ANAC58 ------ARR11(3)            <---------YAB1    <---------At4g35610         --------->YAB1<---------ANAC58 ----->ARR11(3)  <---------REM1(1)      ----------->HVH21           <---------MYB52(1) <---------ANAC58   atcgagagagagagagatggtgaaggaatatgaaagatgggagtgacagctaatataaccaattgtctctgttattcatcacttccctcgcttgcgaggt  6940600                             --------->ZAT6                           ------>MYB46(1)                          ----------->HVH21                          --------->MYB55(1)                         --------->AtMYB61                         <---------MYB111(1)                         <---------MYB111(2)                         <---------MYB46(2)                         <---------MYB52(2)                         <---------MYB59                         <---------MYB55(2)                        --------->ANAC58                        --------->ANAC46                        --------->ANAC58                                         --------->RAP2.3(1)                       ------>NtERF2                                            ------>NtERF2  <<<<<<                      <---------ALFIN1                                         --------->DEAR3(1)                   --------->ANAC46                                           --------->DEAR3(2)                   --------->ANAC58                                           --------->MYB46(3)                   --------->ANAC58                                          <---------At5g28300 <---                 <-----------GT1<---------DAG2        <------------CBF      <-----------GT1   <------         <---------MYB52(1)------>MYB83 --------->TOE2(3)            --------->YAB1    ----------->GT1 --------YAB1  <-----------GT1  <----------DOF2    <-----------GT1 --------->ANAC46   --------->DAG2   ttttattctctgttttttttcaccccacctaacacttttttatcttagtcattttacattgtcttattcactcaaaatttaccgccgaaaggtttttaga  6940700                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                           --------->ARR11(3)                                                          <---------CCA1(2)                                                       <-------TEIL                                                     ------->PIF5                             <---------AHL20(2)      ------->MYC4                             --------->AHL20(2)      ------->PIF4                     <-------TEIL                    ------->MYC2    <---------ICU4 --------->ARR14(2)                <-------MYC2    --------->ATHB51--------->GLK1(2)                <-------PIF4   --------->ICU4  <---------ARR14(2)                <-------MYC3 <<<RAP2.2   --------->GLK1(1)                       ------->MYC3        <-----------RAV1(1) ------WOX13(1)    <---------GLK1(2)                 <-------PIF5       ------->TEIL                - ---TOE2(3)  <---------GLK1(1)                     ------->TEIL >>>>>>>>>>>>>>>>>LFY   <---------ANAC46   ttggcataatttcagatttcagattcagtgtttaattagcaacttggagcatgcatgtgcatatattgccaatgtatgttgttgacatgttgtatacaca  6940800                                 <---------AHL20(2)                               <---------AHL20(2)                              --------->AHL20(2)                              <---------AHL20(2)                              <---------AHL20(1)                         --------->AtLEC2                              --------->AHL20(1)          --------->CCA1(2)                              --------->ARR11(3)         --------->ARR11(1)                              <---------ARR11(3)         <---------ARR11(3)                           --------->YAB1                --------->ARR14(2)           -------->ATHB1                           --------->AHL20(2)            <---------ARR14(2)           --------->ATHB12                          <---------YAB1          <---------ANAC46  --------->ANAC58  --------->ATHB51                      <----------DOF2        <---------REM1(1)      --------->ANAC58 <---------YAB1                   --------->ANAC58   <-----------GT1    --------->ARR11(3)      ----------->GT1 ------>TEIL       --------->ANAC58  <-----------GT1   <---------ZAT6 <---------MYB52(1)      <------   tgaatatgtctatacaaaaacaagctttataatatattttttcccagttgtagagtagagatatgggagcacgttatgcaaaattgtattattgaaaaaa  6940900                                                 ----------->GT1                                                ----------->GT1                                              <---------ANAC46                                              <---------ANAC58                                              <---------ANAC58                                        --------->AHL20(2)                     <---------AHL20(2) <---------AHL20(1)                  ----------->GT1       --------->AHL20(1)          ---------->DOF2           <---------YAB1            --------->YAB1              >>>>>>>>>TBF1                 <-----          --------->TOE2(3)         <---------AHL20(2)       <------ZmHOX2a(1)              <--------    <---------AHL20(2)<---------AHL20(2)<---------AHL20(2) <---------TOE2(3)            --------->AHL20(2) ---AHL20(2)  <---------TOE2(3)    --------->AHL20(2)  --------->YAB1                   <---------AHL20(2)   ttgtatttttttcattaatgtagttaaattgttttcatataataaattgtgtgttaaaaataaggaagaagaaagtaatctatacaaaaatttataactt  6941000                    ---------->DOF2                    --------->ZAT14               ------>ZmHOX2a(2)                                                   <---------SPL7              <------ZmHOX2a(2)                                                   <---------ANAC46             <---------AGP1                                                       <---------ANAC58             --------->ARR11(3)                                                   <---------ANAC58             --------->AGP1                                                      <------NtERF2             <---------ARR11(3)                                                 <-----------HVH21             --------->ARR14(2)                                                --------->ALFIN1             <---------ARR14(2)                                           --------->MYB52(1)          <---------------AGL15                                       --------->YAB1 -----DOF2--------------->AGL15                                   --------->AHL20(2)       <---------AHL20(2) ---GT1--------->AGP1                        ----------->GT1      <---------AHL20(2)     <----------DOF2   tcaatttcagaactagatctagtaaagtcatacatgggccagacatgtagataaatagacgagcccatttaaaaataaacggtgtcgtatgctttaattg  6941100  Previous    Next  AGI:  At1g20010.1    Description:  TUB5 (tubulin beta-5 chain). Identical to Tubulin beta-5 chain (TUBB5) [Arabidopsis Thaliana] (GB:P29513); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB1 (tubulin beta-1 chain), structural molecule [Arabidopsis thaliana] (TAIR:AT1G75780.1); similar to TUB3 (TUBULIN BETA-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60982.1); similar to beta-tubulin [Nicotiana attenuata] (GB:AAR37366.1); similar to beta-tubulin [Eucalyptus grandis] (GB:ABS50667.1); contains InterPro domain Beta tubulin, autoregulati Range:  from: 6937786    to: 6940573    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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