Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     ----------->RAV1(1)                                  --------->ANAC46       --------->KAN4(1)         --------->LBD16                   <------ZmHOX2a(1)       <---------KAN4(1)        --------->HSFB2a(2)          ---------->DOF2 -------HSFB2a(2)         <-----------GT1                ---------->DOF2 --->ZmHOX2a(1)        <-----------GT1               ---------->DOF2           <----------DOF2 ------>HSFB2a(2)   <---------AHL20(2) --------->ANAC46<xxxxxxxxxxxxxxxxsmallRNA(i)       <---------AtMYB61   ctagatagaacaatccagccatttttttctacttccccaacacaaaacacaaacaaaaagaaagaaagaggatttatgagacttttttggggtttgtgga  6839900                                                                                                   --              <---------GLK1(1)                                                                   <--             --------->ARR14(2)                                                 ----------->GT1   <--             <---------ARR14(2)                                                 <------MYB46(1) -----         <---------LBD16        <----------DOF2                  <---------ANAC58       ---------->DOF2    <---------YAB1        <----------DOF2                  <---------STY1(2)    <------MYB83  -------  <---------AHL20(2)      <---------DAG2          --------->AHL20(2)           --------->MYB46(2) ---  --------->ATHB51       <---------DAG2         --------->TOE2(3)<---------ANAC58     <---------AHL20(2)  --------->AHL20(2)  <-----------GT1        --------->YAB1--------->STY1(2)   --------->MYB59<------   tgaattatttttggggatttgtgttcacctttttcttttgctctctatcacattaatttctagctaggcttggagatgtgtttggtatttaaaaggagca  6840000                                                               <---------TOE2(3)                                                            <------NtERF2                                                           ------>NtERF2                                                          --------->DREB2C(2)                                                          --------->RRTF1(3)                                                          --------->RAP2.3(3)                                                          --------->RRTF1(2)                                                          --------->DEAR3(1)                                                          --------->RAP2.3(2)                                                          --------->ATERF1(2)                                                          <---------ATERF1(2)         --------->At4g35610                              --------->RAP2.6(2)         <---------At4g35610                             --------->RRTF1(1)       <-----------RAV1(2)                               --------->RAP2.3(1)      --------->At4g35610                                --------->ERF1      <---------At4g35610       <------ZmHOX2a(1)        --------->ORA47(2) ------->CCA1(2)               ----------->GT1         ------->GAMYB -------ARR14(2)       --------->YAB1                  --------->ANAC58 -------GLK1(2)        -------->HAHB4                  --------->ANAC46           <----------DOF2 ------>ARR10          <---------ICU4                 --------->MYB46(3)  <----------DOF2 -->At4g35610         --------->ICU4           <---------At4g35610       <---------ANAC58 ------>ARR14(2)      <---------YAB1 --------->AHL20(2)--------->ANAC58  <---------ANAC58     <------ ---At4g35610         <---------ATHB12         --------->At4g35610  --------->ATHB12         <-------   gatttgggagcagatgagagagtaatgatggtgaggaaatttaagaaactgctgcaaacgccgccaaggtttattgctttccttcttttctcttcatcat  6840100               <-----------HVH21             ------>ZmHOX2a(2)        <---------At5g28300           <---------ARR14(2)        <-----------GT1           <---------AGP1     --------->ANAC58                   <---------MYB46(3)  --------->ARR11(3)    <---------ARR11(3)                    <-----------RAV1(1) ---ICU4   --------->ARR14(2) --------->ANAC58    <---------At4g35610 --YAB1  --------->ETT(2)     --------->ANAC46   <-----------RAV1(1)   ttaagacattgtcgatctgtcatcaagaactcaagcaatttactgctactactgctggttttctctgtgggtgagagagagagagagagagaaatagaga  6840200                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                 --------->ARR14(3)                                                 <---------ARR14(3)                                                 <---------ARR11(3)                                                 --------->ARR11(3)                                                 <---------ARR14(2)                                                 --------->ARR14(2)        <---------ZAT14                                      <---------ZAT14                      --------->ZAT14                              --------->CCA1(2)  <-----------ARR10  <---------DAG2                 <-                         ---------->DOF2       ----------->ARR10    <----------DOF2                --                      ----------->GT1 --------->ZAT18           --------->ZAT18                    --                   <------ZmHOX2a(1)<---------------AtSPL8      <---------ZAT18                 <----          ---------->DOF2<---------ZAT14     --------->YAB1 <-----------RAV1(1)     *TSS    ---------   gatagagagagagaaagagaaggagagtaaagagatggagagtactatgaagatcttcttctatggggcactttctctacagttgtcttccagtttcaat  6840300                                                                     <------------CBF                                                                   <---------AHL20(1)                                                          --------->AHL20(2)                                                         --------->AHL20(2)                                                         <---------AHL20(2)                <---------ICU4                --------->AHL20(2)   --------->ARR11(3)             --------->YAB1                   <---------AHL20(2)   --------->AHL20(1)       --------->YAB1           <---------ARR11(3)   --------->AHL20(2)    --------->ANAC46 ------------>CBF     --------->AHL20(2)     --------->AHL20(1)          <------- --------ARR14(2)  <-----------GT1    --------->YAB1 <---------AHL20(2)                      -------- ------->ARR14(2)--------->ARR11(3)  <---------YAB1  --------->AHL20(1)                     <-------- ----->TEIL ----------->TBP <---------YAB1<---------AHL20(2)  --------->AHL20(2)      <-------------- -----ATHB12--------->AHL20(2)  --------->ARR11(3)--------->YAB1 <---------AHL20(1)   <---------ANAC58 --->CBF------------>CBF  --------->YAB1 --------->AHL20(2)  <---------AHL20(2)       <---------ANAC58   gaatccccatcacaataaatatcaccaattttgatatctattataaaattaaaaataaaataaataatatatattgtatgttttgttttcttgtttcgga  6840400                                                                     ----------->GT1                                                                   ---------->DOF2                                                                  ------>ZmHOX2a(1)       --------->At4g35610                                  -------->HAHB4     --------->YAB1           --------->ARR11(3)            <---------ICU4    <---------YAB1            <---------ARR11(3)           <---------YAB1  --------->YAB1         --------->AHL20(2)                <---------ATHB51          --------->YAB1 <---------YAB1   --------->YAB1                        --------->AHL20(1)      --------->AHL20(2) --HSFB2a(2)      --------->ATHB12                      <---------AHL20(2)  <---------AHL20(2) <----- ->HSFB2a(2)     <---------YAB1     --------->HSFB2a(2) <---------AHL20(1)  --------->AHL20(2) ------ -LBD16<---------YAB1  <---------ANAC55(2)--------->ATHB12 --------->ICU4  --------->AHL20(2)  <----- ---AGL1         --------->ICU4     <---------HSFB2a(2) --------->AHL20(2)<---------YAB1       ------   actattatcatcagaggctatgattaagtaaatgtcttctagagtgatttgaaactaattaattattcctaaagttattaaaaaaaatcagcatgagaat  6840500                                                  <---------AHL20(2)                                                --------->AHL20(2)                                                <---------AHL20(2)                                  <                                              <---------AHL20(2)                                    -                                              --------->AHL20(2)                                   <-                                            --------->AHL20(2)                                     <-          --------->YAB1                    <---------AHL20(2)                                     --   --------->ANAC58                       --------->AHL20(2)                                    <----   --------->ANAC58    --------->AHL20(2) <---------AHL20(2)                                    -----   --------->ANAC46 --------->YAB1      --------->AHL20(2)                                      ----- ----GLK1(1)       <---------YAB1       <---------AHL20(2)                                     ------ --->GLK1(1)     <-----------GT1 ----------------->AGL3                 --------->ARR11(3)     <----- ----ARR14(2)   <---------AHL20(2)    <---------AHL20(2)         --------->AHL20(2)    --------->At4g35610 --->ARR14(2)   --------->AHL20(2)    --------->AHL20(2)         <---------AHL20(2)    <---------At4g35610   tctccaagaaaatcaaaatttatcatataatacgttctatatatatatatatatatatgtgtgtgattttattagttcttgtatgtcttagcagaaatta  6840600                                           --------->TGA2(2)                                          <-----------TGA1                                         <---------O2                                         ==========================bZIP_DOF                                         ==========================bZIP_DOF                                         --------->TGA1a                                         --------->O2                                         --------->bZIP60(2)                                         <---------TGA1a                                         --------->ANAC55(1)                                         --------->ANAC58                                         --------->ANAC55(2)                                         --------->ANAC46                                         --------->bZIP60(1)          ----------->GT1                <---------bZIP60(1)  <---------YAB1                         --------->ANAC58 --------->AHL20(1)                      <---------ANAC55(2) ---------AHL20(2)                      <-----------STF1 -------->AHL20(2)             --------->AHL20(1) --------AHL20(2)              <---------AHL20(1) --------AHL20(1)              --------->ARR11(3)                                                   - ------->AHL20(2)              <---------ARR11(3)                                                   - -----AHL20(2)                --------->AHL20(2)                                                    < ---->AHL20(2)            <---------AHL20(2)                                              <------ZmHOX2a(1) ---->AHL20(1)            --------->AHL20(2)   --------->YAB1         ---------->DOF2    ----------->GT1 --->AHL20(2)     --------->AHL20(2)  <---------ATHB12    ----------->GT1              <---------LBD16 ----AHL20(2)     <---------AHL20(2)--------->WOX13(1)  ---------->DOF2    --------->GLK1(2)       --   aattattttagagagtcaaatttatcaaataaatatatcaatcacgtcatcaaaattagaaagaaaaaaaaaaaaagaatcagaggttaccaggataaaa  6840700              <---------ANAC58              <---------ANAC55(1)              <---------ANAC58              <---------ANAC46                 --------->LBD16      <---------YAB1              <---------ANAC58                                              -----    ----------->GT1               <---------ANAC58 --------->ZAT6                           <------MYB46(1) -------->AHL20(1)                <---------ANAC46<------ZmHOX2a(2)                    >>>>>>>ZML2 -------->AHL20(2)        --------->RAP2.6(2)<---------LBD16               <---------ANAC58 <------MYB83 ---------AHL20(2)        --------->DEAR3(1)<---------At5g28300            <---------AtLEC2<---------MYB46(3) ------->AHL20(2)   ---------->DOF2        <-----------GT1                 <---------ANAC58--------->MYB55(2)   aaaaaattgtgatttggcgtgttaaagaccgcccttgtgtggattttaccggatcactagtttttgccgaagtttttgcatgtttagttctagtgggtga  6840800  Previous    Next  AGI:  At1g19790.1    Description:  SRS7 (SHI-RELATED SEQUENCE 7). similar to SRS5 (SHI-RELATED SEQUENCE 5) [Arabidopsis thaliana] (TAIR:AT1G75520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61060.1); contains InterPro domain Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511); contains InterPro domain Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); contains InterPro domain Protein of unknown function DUF702 (InterPro:IPR007818) Range:  from: 6838111    to: 6840284    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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