Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <-----------GT1  <---------AHL20(2) --------AHL20(2) ------->AHL20(2)                                                                                  <x ------>AHL20(2)                                             --------->AHL20(2)               xxxxxxx -------AHL20(2)                                             <---------AHL20(2)           xxxxxxxxxxx ------YAB1                        <---------ARR11(3)       <---------AHL20(2)           xxxxxxxxxxxx ----ICU4                          <---------GLK1(2)        --------->AHL20(2)        <xxxxxxxxxxxxxx ----AHL20(2)              <---------AHL20(2)          --------->TOE2(3)             <<<<<<<<<<<<<<<< -->ATHB1                  --------->YAB1            --------->ARR11(3)              <-----------GT1< --->YAB1                  --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxx --->ATHB51               <---------YAB1           <---------YAB1                   xxxxxxxxxxxxxxxxx ---HAHB4               --------->YAB1          <---------AHL20(2)               xxxxxxxxxxxxxxxxxxxx -->HAHB4              <---------AHL20(2)       <---------YAB1                 <xxxxxxxxxxxxxxxxxxxxx ---ATHB51             --------->AHL20(2)    --------->AHL20(1)   <-----------GT1<xxxxxxxxxxxxxxxxxxx ---YAB1               <---------YAB1        <---------AHL20(1) <---------AHL20(2)<---------ICU4  xxx -->ICU4              --------->AHL20(2)    --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxx >YAB1        <---------WOX13(1)   --------->ARR11(3)<---------ARR11(3)     <-----------GT1 xxxxxxxxx   ttaatttatactattgatggaccatataattatataagattttcaaaaatattattatcttattaatttatcgatttttatcaatttttacattggtccc  6759600              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <-----------ARR10         <---------ARR14(2)         --------->ARR14(2)         --------->GLK1(2)        <---------GLK1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(si3) xxxxxxxxxsmallRNA(si3) <LFY  xxxxxxxxxxxxxxxx>smallRNA(i)                            ---------->DOF2 xxxxxxxxxxxxxxxxsmallRNA(i)                               <---------ICU4 xxxxxxxxx>smallRNA(se3)              --------->ARR11(3)  <---------------AGL15                   --- xxxxxx>smallRNA(s2)                  <---------ARR11(3)  --------------->AGL15    <---------AHL20(2) xx>smallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->AHL20(2) xsmallRNA(se3)       xxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------At4g35610       <---------AHL20(2) xxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->At4g35610       --------->AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->AHL20(2) <-- xxxxxxxxxxxxxxxx>smallRNA(fl3)   ---------->DOF2<---------GLK1(2)          <---------HSFB2a(2)   --- xxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->HSFB2a(2)   <--   aacttgctcagaatctgtgctcattcttatgcattctaaagaacttgctcagactctctgctcattacagcaaaacttctataaattaatacttgaaaaa  6759700   <---------AHL20(2)   <---------HSFB2a(2)  --------->AHL20(2)    --------->HSFB2a(2)               ----------->GT1  <---------AHL20(2) <---------AHL20(2)                 <---------ANAC46 ------>AHL20(1)  <---------AHL20(2)                 <---------YAB1                                -- -------AHL20(1)  --------->AHL20(2)             <---------ANAC58                     -------->HAHB4 ------>AHL20(2) <---------AHL20(2)              <---------ANAC58                     --------->ATHB12 -------AHL20(2) --------->AHL20(2)              <---------ANAC46                    --------->ICU4<-   tttattaatttttcaagtattaatttatagaagttttgctgtatatgtttggcttatgatgtgtaatttgtttgaaattggagggaaatgatgggactct  6759800                                                <---------YAB1                                            --------->ANAC55(2)          ---------->DOF2             --------->ATHB12      <-----------HVH21              --------->ICU4                                             -----     ----------->GT1               --------->YAB1                                          --------->ANAC46 ------->ZAT14             xxxxxxxxxxxxxxxx>smallRNA(i)                       <---------ICU4    ----- --------ZAT14         <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <----------DOF2    --------->MYB52(1)   gagcacagggtcaaaagagaaactttagaatgcataagaatgatttaagtattatttctaaacttgagggttctttttgaaaattacaaataaacggcaa  6759900   --------->TOE2(3)   --------->TOE1(3)                                            ---------->DOF2   ------->GAMYB                          <----------DOF2    --------->At4g35610 -------->P                     <---------WRKY18(1)     *TSS <---------At4g35610 ------>NtERF2 ------>MYB46(1)             <---------ICU4       ------------>CBF              --------->LBD16 ------>MYB83                ------>ZmHOX2a(2)   --------->ANAC58      <---------TOE1(3)       ------ ---->ANAC58               <---------ARR11(3)    --------->ANAC46      <---------TOE2(3)<-----------GT1 ---->ANAC58               --------->ARR11(3)    --------->ANAC58<---------TOE2(3)     <-----------GT1   gccaaccctaattcgagtcccatttctgtgatcttgacctcttcctttctcactcaatttctgagctaaagttagggttttgccgagatttatcgtcctt  6760000                                                   --------->MYB46(3)                                                  <------ZmHOX2a(2)                               ---                                                 --------->ARR14(2)                               ---                                   ======================HOX2a_HOX2a                              <--                                   ------>ZmHOX2a(1)<---------ALFIN1                              <--                                ------>ZmHOX2a(1)<---------ARR14(2)  <---------ARR11(3)     <--------         <---------LBD16--------->ARR11(3)   --------->ANAC58        --------->ARR11(3)     ---------   <-----------GT1      <---------ARR11(3)   --------->ANAC58 <-----------GT1          <----------DOF2 >ZmHOX2a(1)   ---------->DOF2  =========================HOX2a_HOX2a--------->YAB1  <---------ALFIN1   ctgttaaactcttcggagaaagatgaaatctttcctcctctctagacaagcgatccaccgtatttcactattatcttcaaaaaccccaactttctgcaga  6760100      ------>NtERF2      --------->LBD16     --------->ANAC46    <---------LBD16 ------>HSFC1(2)                                  --------->TOE1(2) ------>HSFB2a(1)                                --------->HSFC1(2) -------HSFB2a(1)                        <---------At4g35610 -------HSFC1(2)                         --------->At4g35610 -At4g35610                     <---------YAB1   <---------HSFC1(2) >At4g35610     --------->MYB46(3)  ------>ZmHOX2a(2)       --------->MYB46(3)     <---------GLK1(1)   aacttctccgccattacatccaccatttctcactctgatcgtcatctaagaagctacgacgaacaaaccccattccaaaatgtcgaaatccctagaccca  6760200                                                                 >>>>>>>>>WRKY18                                                                --------->WRKY12                                                                ----------->HVH21                                                            <------NtERF2                                                           <---------RAP2.6(3)                                                           ------>NtERF2                                                          >>>>>>>>>AtERF-4                                                          <---------bZIP60(1)                                                          >>>>>>>>>AtERF-3                                                          --------->DEAR3(1)                                                          --------->RAP2.3(2)                                                          --------->RAP2.3(3)                                                          --------->RRTF1(3)                                                          <---------ATERF1(2)                                                          --------->ATERF1(2)                                                          --------->RAP2.6(2)                                                         --------->RAP2.3(1)                        --------->ZAT14                  --------->ERF1                        <---------ZAT14                 <---------ATERF1(1)          <---------ATHB12   --------->ANAC46           <---------ZAT18                    ----------    --------->WOX13(1) <----------DOF2           --------->ARR14(2)                      <---------At4g35610   <---------ICU4      <---------DAG2            <---------ARR14(2)                      --------->At4g35610  <---------YAB1 <-----------GT1       ------>NtERF2   --------->ALFIN1               <------ZmHOX2a(1)   tttcatcattcaatcgatatttccactttactcgcgagtcccgactcagtgaatccagtgccgccattgacgactcaaatgaccaagaggaagatgacga  6760300                         <---------YAB1                                  ----------->GT1                    ------>ZmHOX2a(1)                     <---------At4g35610                --------->ARR14(2)               ---------->DOF2       <---------GLK1(2)          --------->MYB52(1)               <---------ANAC58      -------->P         ------->GAMYB  <---------TOE1(2)  <---------ANAC58  --------->At4g35610        <---------MYB55(2)      <---------MYB52(1)      <-----------RAV1(2)              <---------WOX13(1)        --------->MYB46(3)   <-------TEIL  <---------ANAC46  <---------HSFC1(2)        --------->ATHB12 ->TGA1 <---------MYB52(2) --------->ARR14(2)--------->ALFIN1--------->HSFC1(2)       <---------YAB1   agatggaacaacaaacgagttcctctcacgattcgtttggataatgcgtgggaaagtctcagaagcttacccagattgtgacaagaagatgattgatggt  6760400                                                                                    --------->At4g35610                                                                                    <---------At4g35610                                                                                  <---------WRKY12                                                                               --------->ANAC46                                                       --------->DAG2          --------->DEAR3(1)                                               >>>>>>>>>GATA-2               <---------At5g28300                  ---------->DOF2              >>>>>>>>>GATA-3           --------->AtMYB61          <---------YAB1                       >>>>>>>>>GATA-4    <---------At4g35610       <----------DOF2 <---------ANAC46        >>>>>>>>>GATA-1    --------->ZAT2<-----------HVH21       <---------YAB1  <---------ANAC58        <---------ARR14(2) --------->At4g35610     <---------At4g35610             ---------->DOF2  ---------->DOF2 <---------ALFIN1              <  <---------At4g35610  <---------ANAC58     --------->ALFIN1   <------ZmHOX2a(2)<-----------TGA1    -   atgcttctgcttattgttgagaaagtcgtggaagaaatcgaaagaggtggattcaataaagttggatcagctccaccttcaccgtcatcggagtttagcg  6760500  Previous    Next  AGI:  At1g19520.1    Description:  NFD5 (NUCLEAR FUSION DEFECTIVE 5); transcription factor. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G01970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61146.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6759956    to: 6762769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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