Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->YAB1                                                                                   --------->CCA1(2)                                                                                  --------->ARR11(1)                                                              <---------ANAC46    <---------ARR14(2)                                                              <---------REM1(1)   --------->ARR11(3)    <---------YAB1                                         <---------AtMYB61      <---------ARR11(3)   <---------ARR11(3)     --------->YAB1              <---------ANAC58            --------->ARR14(2) ------->YAB1          --------->YAB1                 <---------ANAC58  <---------At4g35610   aacatgatcactgattcaagacaaataatcaaaaatatgtttttcaggtctcaattgagtgatggtgtaagttcaactgttcaagatatgaagaataaca  6607700                              <---------ICU4                             <---------YAB1                  <---------ARR11(3)                  --------->ARR11(3)                 <---------ANAC58                 --------->CCA1(1)                   <---------ANAC58      --------->YAB1                 --------->RVE1(1)                 <---------AHL20(2)     <---------YAB1            <             --------->AHL20(2)                    <-----------GT1      --------->YAB1       <-------      ----------->GT1   --------->YAB1        ------->TEIL            <-----------GT1    <---------AHL20(2)   ttggagaagggtcataaaaatatctctgataatcagtgtttacagatgtatatttacttgtcaaactccatttttcatcatagatttgtttttatttttt  6607800                    --------->GLK1(2)                    --------->ARR11(3)                              <---------AHL20(2)                    <---------ARR11(3)                              <---------AHL20(1)                    <---------ARR14(2)                              --------->AHL20(1)          ----------->GT1                                           --------->AHL20(2)          <---------ANAC46                                     <---------ATHB12         --------->ALFIN1                                      <---------ATHB51      <---------TOE2(3)                                        --------->AHL20(2)   --------->AHL20(2)       <---------At4g35610   <-------TEIL <---------AHL20(2)                   <   <---------AHL20(2)    <---------MYB52(1)   <---------ARR11(3)   --------->AHL20(2)               - ---------GLK1(2)   --------->ARR14(2)        --------->AHL20(1)   <---------AHL20(2)          <----- --AHL20(2)    ----------->GT1                <---------AHL20(1)--------->AHL20(2)             ------   cagattttaatgtggtgaagaaaatctgtttgctcatgtaaactacaaaatattcatcttatcaaataattttatttgtatttatgcagtttgaaataag  6607900                                       --------->AHL20(1)                                       <---------AHL20(1)                                       --------->AHL20(2)                                       <---------AHL20(2)     --------->YAB1                 --------->YAB1     <---------ICU4         ----------->GT1    --------->ICU4        <---------ANAC58 ---------YAB1            <---------ANAC58                              <---------AHL20(2) -------->ICU4         <---------GLK1(1)                                --------->AHL20(2)   <------- ----ANAC55(2)         --------->GLK1(1)           <---------TOE2(3)    --------->AHL20(1)   -------- --->ANAC55(2) --------->ATHB12    <---------AHL20(2)         ---------->DOF2   <--------P  ---------   tgatgaataatgaagaatgactgagatttcttgttaaataataaaatgaaatgaaggaaaacccaaatgcaaaataaaatgggttgattatgcaatagtt  6608000                                                                                        <------NtERF2                                                                                        <---------MYB52(1)                                                                                       <-----------HVH21                                                                                       <---------RAP2.6(3)                                                                                      --------->RAP2.3(3)                                                                                      --------->RAP2.3(2)                                                                                      >>>>>>>>>AtERF-3                                                                                      >>>>>>>>>AtERF-4                            ------>ZmHOX2a(1)                                        --------->RAP2.3(1)                           --------->TOE2(3)                                     <---------ANAC58                           <---------------AGL15                              --------->TOE1(2)                          <-----------------AGL1                              --------->TOE2(2)                          ----------------->AG                               <---------ANAC58                          ----------------->AGL1               ----------->HVH21 <---------ANAC58 --ICU4             ------->TEIL<------------CBF          ------>MYB46(1)    <---------ANAC58 ->YAB1         <---------TOE2(3) ----------->GT1         ------>MYB83     --------->GLK1(2) >ICU4      <----------DOF2--------------->AGL15        <---------MYB59   <---------GLK1(2)     -----   acgaagttttggggttttaatgtatttttcctaaaattgaaaaaaaaactcagtctgaccaaactttgacagaacagaatcgtgcgagccgtcagactta  6608100                                                         <---------GLK1(2)                                                      <---------MYB52(1)                                                     <-------GAMYB                                                    --------->MYB52(2)                                                    <---------MYB46(3)                                                   <-------TEIL                                   ---                ------>ZmHOX2a(2)              <---------TOE2(3)                                 ----               <------ZmHOX2a(2)         <---------AHL20(2)                           <------ZmHOX2a(1)              --------->ARR11(3)         <---------AHL20(1)                           ===============       <------ZmHOX2a(2)                 --------->AHL20(2)                           ===============      *TSS    <---------ARR11(3)         --------->AHL20(1)             <---------At4g35610     ----- ---->MYB52(1)<---------AGP1            --------->AHL20(2)              --------->At4g35610 >>>>>>>>>TBF1   acgaaaacgatccatagatctcaagtctctctctcttagtgaataaattagggttcgttgattctctgttcttaagctcagtaatcgaggagaagaagaa  6608200        --------->HSFB2a(2)                                                                        --       <---------LBD16                                                                      ------>ZmHOX2a(1)       ------>ZmHOX2a(2)                                                                  -----------      <------ZmHOX2a(2)                                                                --------->At4g35610     --------->ARR11(3)                                                                <---------ZAT2     <---------ARR11(3)                                                              <---------DEAR3(1)     <---------ARR14(2)                                                             <---------At4g35610     --------->ARR14(2)                                                        <---------ANAC58    <-   ----------->ARR10                                                           <---------ANAC58   --- ------>DAG2                                <---------ANAC58                   <---------ANAC46   <-- ----->DAG2                        --------->DAG2    <------ZmHOX2a(1)       --------->ARR11(3)  <--- ============HOX2a_HOX2a          --------->DAG2   <---------ANAC46          <---------ARR11(3)<----- =============HOX2a_HOX2a        ---------->DOF2--------->ALFIN1     --------->GLK1(1) <---------At4g35610 ----->DOF2                ----------->GT1  <---------ANAC58         <---------GLK1(1)<---------ATERF1(1)   aagggaagatcgggaattgggaaactgagaagtcaaaaaggcaaatgcgagtggaggagattgagttttagaattccaatgtcttgggctgctcctgatg  6608300                                                                                                    - ------->ARR11(3)                                                                 <---------GLK1(1) < >RAV1(2)                                                                 --------->LBD16           < --------ARR11(3)       <---------ANAC58                                 --------->DEAR3(1)       --- ------>GLK1(1)         <---------ANAC58                               <---------At5g28300  <-------- -------GLK1(1)        <---------At4g35610                   <---------YAB1 <---------DEAR3(1)    <-- ------ARR11(3)        --------->At4g35610                <---------YAB1<---------LBD16     --------- ----YAB1 <---------ALFIN1                            <----------DOF2 <-----------GT1 ----------->GT1   atatcttcttctccacttctcttgctgcttacctagacagtaatctctctcactctctttctcattactgattcaccggcgatgaattctgtaaaaaaat  6608400                          --------->ARR11(3)        ------>ZmHOX2a(2) <---------ARR11(3) -------->ARR11(3) <-------GAMYB                                                        --------->HSFB2a(1) ---------ARR11(3)--------->MYB55(2)                                                    --------->HSFC1(2) ---------GLK1(2) <---------MYB46(3)                                        <-----------RAV1(1) -------->ARR10   --------->MYB111(2)                                     <---------ANAC58 -AHL20(2)       <--------P                                               <---------ANAC58      <---- -------TOE2(3)<---------MYB46(3)                                   <---------YAB1      <---------HSFB2a(1) >AHL20(2)    <---------ATHB12              <---------YAB1    <---------TOE2(3)         <---------HSFC1(2)   aagattttgatccccaatggttgttgaagatgttatcttcttctacatgattcaatagtctcttaatgttttgatttcttgttgcagagaaacttcttgt  6608500              <------MYB46(1)              <------MYB83                                    <----------DOF2            <--------P                                  <---------ANAC58         <---------AtMYB61                          <------MYB46(1)         <---------YAB1                             <------MYB83    <---------ANAC46                               <---------------AtSPL8 <---------ANAC58                                  --------->MYB59  <----------DOF2 <---------ANAC58                       ------>ZmHOX2a(1)   ---------->ID1       --------->GLK1(2) -------RAV1(1)<------ZmHOX2a(1)        <----------DOF2 <---------ANAC58        --------->GLK1(1)  --   gttgcttcgtgatggtaggaaactgatgggtctacttcggtcctttgatcaatttggtacttgtctttctcttttgcaccgaaaatccaaagtctttgaa  6608600  Previous    Next  AGI:  At1g19115.1    Description:  other RNA. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45599.1) Range:  from: 6606238    to: 6607933    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g19120.1    Description:  small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative. similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT3G14080.1); similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT3G14080.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN62239.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribo Range:  from: 6608106    to: 6609360    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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