Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <----------DOF2                         <---------DAG2                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------ARR11(3)           --------->ARR14(2)           <---------GLK1(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(i) ---------AHL20(2)     xxxxxxxxxxxxxxxx>smallRNA(s) -------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->ANAC58 -----AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            ---------->DOF2 ---->AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------MYB83--------->ANAC58 ----AHL20(1)         <---------ALFIN1<---------GLK1(1)       ----------->GT1 --->AHL20(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <------MYB46(1) --->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->MYB59 ----AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->GLK1(2)<---------ANAC46           ------- >AHL20(2) --------->ARR11(3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->GLK1(2) -AHL20(2) <---------ARR14(2)         <---------At4g35610    --------->MYB46(2) <---------GLK1(2)   atttattttttgagatactctctaccacttttgccgatggagatgctctcagtttctgtgtgtttggtaacttggaaagccaaattctggcactgcaaaa  6589800                                                                            --------------->AtSPL8                     --------->LBD16                                      --------->ATHB12                   <---------LBD16                                      <---------WOX13(1)            --------->YAB1                                            <------ZmHOX2a(1)        <-----    --------->AHL20(2)    --------->DAG2                     <-----------RAV1(2)           xxxxxxxxxx    <---------AHL20(2)<------ZmHOX2a(1)--------->ALFIN1    <------ZmHOX2a(1)<---------------AtSPL8  < --->DOF2 ----------->GT1---------->DOF2       --------->ZAT18  <------ZmHOX2a(1)          <---------   gcttatttaaacaagtatatttcaggaaaaaggaagcgggagaggggagcccagtacttgaggacaggagaaggattgattgtacataaatctctttctt  6589900      <---------ANAC58      --------------->AGL15   <---------WOX13(1)       <---------------AGL15  <---------ANAC58         <-----------------AGL3  <---------ANAC58     --------->HSFB2a(2) --------->ATHB12    <---------LBD16 -----DOF2    --------->ARR14(2) xxxxxxxxxxxx>smallRNA(le3)----------------->AGL3                                             ------- ---------YAB1<---------ARR14(2)                                                   <----------ID1 -DOF2<---------ANAC58 <---------HSFB2a(2)                         --------->AHL20(2)         -------   ttttgattgcctacaaaatcggcttcgggactaaaattagaactccattggagaatgagttagtcaaaaaaaaattccctaaattaagacaaatgcaagc  6590000                                                               --------->At4g35610                                                               <---------At4g35610            --------->RVE1(1)                             <---------------------WRI1           --------->GLK1(2)                             <-----------HVH21     --------->ANAC58                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)     --------->ANAC58                               --------->WOX13(1)    ------->TEIL -->ANAC58 --------->ARR11(3)                    <-----------GT1 --------->ZAT18 -->ANAC58 <---------ARR11(3)              <---------TOE2(3)---------->DOF2 ----------->GT1 <--------   acaagagaagcaaaatctctctgtctcttctctgaattcaaaacaaaggtttttcaatctgtcaaagctcacaatgaaccgaaattacagagagattgac  6590100                                                                    <---------MYB52(1)                                          ------>MYB83             <-------GAMYB              <------NtERF2                                          ------>MYB46(1)     --------->MYB46(3)             --------                                        <---------MYB111(1)  <---------ALFIN1                <xxxxxxx                                        <---------MYB46(2)  ------>MYB83                    <--------                                      ------->TEIL          ------>MYB46(1)                 <--------                                  --------------->AtSPL8   <---------ALFIN1                <------NtERF2                                 ---------->DOF2          <---------MYB55(2)              --------->LBD16                             <----------ID1               --------->MYB46(3)             --------->ANAC46                        <----------DOF2 <---------MYB59<---------ALFIN1<---------ANAC46 <---------LBD16                 <---------CCA1(2)<---------------AtSPL3 --------->ANAC46             <xxxxxxxxxxxxxx -WOX13(1)   <-----------GT1 --------->ANAC46    <---------DAG2--------->ANAC46      <---------ALFIN1   tcgtcttcttcgatttttcttatctccttttacgacaaagtacctaatccaccttctccacccactcgccgttgtggagagggagagacacccggcggag  6590200       --------->ALFIN1     <------MYB83     <---------ANAC46     <------MYB46(1)    --------->MYB55(2)    <---------MYB46(3)   <XXXXXXXXXXXXXXXXXXXXXMIR472   --------->ALFIN1 <---------ANAC58 <---------ANAC58                             <-------TEIL                     --------->CCA1(2) <---------ANAC46  >>>>>>>>>TBF1            <---------ARR14(2)                 --------->GLK1(1) ->LBD16        >>>>>>>>>TBF1               --------->ARR14(2)                <---------ARR14(2) xxxxxxxxxsmallRNA(i)               *TSS   <------ZmHOX2a(1)                  --------->ARR14(2) -ANAC46        ------------------------>ANAC81                       <---------ICU4  <-------MYC3 -DEAR3(1)  <------ZmHOX2a(1)  --------->At4g35610                --------->YAB1      ------->MYC3 xxxxxxxxxsmallRNA(le3)        <---------At4g35610        <-----------GT1     <---------GLK1(2)     <   ttggagtgggtggaggaagaagaagaagacgagagcagaaacagaggattcatcgatgttatactctatcaaaaattgcagatttgcatatggaaagact  6590300                     <---------O2                     --------->O2                     --------->ANAC58                     --------->TGA1a                                                 <---------ANAC46                     --------->ANAC58                                                <---------ANAC58                     --------->ANAC46                                      <---------ANAC58                     --------->bZIP60(2)                               <---------ANAC58                     <---------TGA1a                                   <---------ANAC58              <---------ICU4                                           <---------ANAC46             <---------YAB1    --------->GLK1(1)            xxxxxxxxxxxxxxxx>smallRNA(i)           --------->YAB1<---------SPL7                  ==================HOX2a_HOX2a          <-------TEIL<-----------HVH21    <---------ARR14(2)       ------>ZmHOX2a(1)<---------ANAC58 <<<<<<<<TBF1--------->ICU4    <---------GLK1(1)         ------>ZmHOX2a(2) <---------ANAC58       ---   tcttcttcacgattcatgatcacacgtcgtccgatttctgatgcaaatttgtgcttcgatcgctcaattcctcgcttgggtttcattccttgtactatta  6590400                  <<<<<<<<<TBF1       <---------PCF2     <---------DEAR3(1)     <---------ZAT18                                     <---------ALFIN1                  ------>ZmHOX2a(1)     --------->ABI4(2)            ==========================HOX2a_HOX2a             <------MYB46(1)    --------->ALFIN1      --------->GLK1(2)          <------ZmHOX2a(2)              <------MYB83  <---------DEAR3(2)     --------->ARR14(2)         --------->ARR11(3)           <---------AtLEC2  <---------MYB46(3)     <---------GLK1(2)     <----------DOF2                  <---------ZAT2 <---------DEAR3(1)  <---------LBD16          --------->TOE2(3)      --------->TOE2(3)    --------->TOE2(3) -------->HVH21<<<<<<<<<TBF1      ------>ZmHOX2a(1) <---------ARR11(3)       <---------At4g35610   gcgacggtgggctcttcttcttcttcggaatctctcctaaattgtcaacctttagatcaccaccttgtaaaccctagtcgtctgcttggtttcctcagag  6590500                         ------->GAMYB                         --------->TOE2(2)                        <---------MYB52(2)              --------->ATHB12              <--------ATHB1        <----------DOF2              --------->YAB1     --------->ANAC58              <---------ICU4--------->MYB46(3)                            ------>MYB46(1)             --------->ICU4------>MYB46(1)                                ------>MYB83             <---------ATHB12------->GAMYB                              <---------MYB111(2)          <---------WRKY12--------->MYB52(1)                         <---------ALFIN1        <-------         <---------MYB52(1)------>MYB83                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-----------HVH21--------->TOE1(2)   <---------MYB52(1) ------->TEIL            <---------ZAT14        --------->LBD16 --------->MYB46(3) <---------MYB46(3)  <---------CCA1(2)        --------->ZAT14 <---------ARR11(3)--------->YAB1--------->ANAC58     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------   caatgtcttccgtcaatgatttcataaccaacgacaagctttgggtcgtttcttccatcaccgatgtatctccacctatctatgtgtttctacagtgcag  6590600    ------>ZmHOX2a(2)   <---------GLK1(1)   --------->GLK1(1)   <------ZmHOX2a(2)                                                                 <---------ARR14(2)  --------->ARR14(3)                                                                 --------->ARR14(2)  --------->ARR14(2)                                                           <---------MYB46(3)  <---------ARR11(3)                               --------->ZAT2             <---------AtMYB61  <---------AGP1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->ALFIN1  <---------ARR14(3)           <----------DOF2     <---------At4g35610       <---------MYB52(1)  <---------ARR14(2)          <---------ANAC58     <---------ZAT2           --------->LBD16  --------->ARR11(3)   <---------DDF1        --------->ARR14(2)           <---------LBD16  <-----------ARR10   <---------ETT(2)       <---------ARR14(2)         <---------ARR14(2)      <---- --ZAT14              --------->ETT(2)   <---------At4g35610  xxxxxxxxxxxxxxxx>smallRNA(i)   <------- ->ZAT14       <---------YAB1 <---------ANAC58     --------->At4g35610  --------->ARR14(2)   <-------   agaagatctctctgtttccgattgtcgacattgcttcaacgagagcagattggagctcgagagaaaatgttcgggttccggtggtcgaatccatagtgat  6590700  Previous    Next  AGI:  At1g19090.1    Description:  RKF2 (RECEPTOR-LIKE SERINE/THREONINE KINASE 2); kinase. Identical to Cysteine-rich receptor-like protein kinase 1 precursor (CRK1) [Arabidopsis Thaliana] (GB:Q9LMB9;GB:O22580); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G40380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64296.1); contains InterPro domain Protein of unknown function DUF26 (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro doma Range:  from: 6590236    to: 6592807    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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