Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------------AGL15                                                          <---------YAB1      --------------->AGL15                                                         --------->ARR11(3)      <----------DOF2                                                          <---------AHL20(2)     <-----------------AGL3                                                    --------->AHL20(2) ---------HSFB2a(1)                                                           --------->AHL20(2) ---------MYB46(3)                                                         --------->YAB1 -------->HSFC1(2)                                                        <---------YAB1 -------->HSFB2a(1)                                                   <---------AHL20(1)       ------ ---------HSFC1(2)                          --------->REM1(1)         --------->AHL20(1)       <----- -ANAC58                  --------->YAB1 --------->ANAC46        <---------ATHB12   <---------ARR11(3) -ANAC58      ----------->GT1  --------->ICU4         <---------YAB1  <---------ARR11(3)      -------   gatggttccttttaatgggttacttcaatagtcatgttgatacactacatctagttatgtttctcaaatcaatattttcataaaattatctttgtaatat  6546000                            <---------ARR11(3)                                        ---------->DOF2                            --------->ARR11(3)                                    --------->AHL20(2)                  --------->AHL20(2)                                              <---------AHL20(2)                  <---------AHL20(2)                                          --------->ICU4                 <---------AHL20(1)       <---------YAB1                     <---------AHL20(2)                 <---------AHL20(2)     --------->YAB1          <-----------GT1  --------->AHL20(2) <---------AHL20(2)         --------->GLK1(2)                <----------DOF2--------->YAB1 --->AHL20(1)    --------->AHL20(2)    <---------YAB1  --------->DAG2    <---------HSFB2a(2) ----AHL20(1)   --------->ICU4    --------->ZAT6      ---------->DOF2    --------------->AGL15 -->ICU4   ----------->GT1 --------->RVE1(1)         <---------ATHB12    --------->HSFB2a(2)     <---   ttttaaaatgctgtagtaatttttttaaaaaatctaacactattataaaaaaccaataaagtgcttttactagttctataaaaattaataaagttttttt  6546100         --------->AHL20(2)         --------->YAB1                   --------->RVE1(1)  ----------->GT1                        <---------ARR11(3)  <---------ANAC46                       --------->GLK1(2)  <------MYB46(1)     ----------->GT1    --------->ARR11(3)       <-----------HVH21                 <  <------MYB83---------->DOF2           --------->RVE1(1)   <---------AHL20(2)          --------->ARR14(2) --------RAV1(1)     >>>>>>>>>TBF1      --------->CCA1(1)   --------->AHL20(2)          <---------ARR14(2)   tgttgggttaataaaaaaaagaagaagaaaaaaaaacacaaaaaatctctctcgagccctaataaaactgtgagcccctctattttctcagaccctcgtg  6546200                                                                                                    <                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                       <---------At5g28300       <---                                                                      <-----------GT1          ------           --------->MYB52(1) ------>ZmHOX2a(1)                   --------->AHL20(2)         ------>ZmHOX2a(1)         <----------DOF2      <---------At4g35610                 <---------AHL20(2)        --------- -----------GT1          <----------DOF2                   ----------->HVH21          <----------DOF2   tttcactctcgcttaacgagtcgtttcctttcctctgatcaattctctcagagagacctatttgacatttatttaccatctcaatcttctttttcctcag  6546300          <---------CCA1(2)    <<<<<<<<<TBF1 -----------GT1 ------ARR14(2) ------GLK1(2)                                                                  ------>MYB83 ----->ARR11(3)                                                       <----------DOF2      ------>ZmHOX2a(1) ----->ARR14(2)    --------->ANAC58                             <---------ETT(2)------>MYB46(1) ------ARR11(3)    --------->ANAC58                             <---------WRKY38(1)       *TSS   <--- ----->ARR10       --------->ANAC46                             ----------->HVH21  <----------DOF2 >TOE2(3) <---------At4g35610                           --------->MYB46(3)    <---------MYB59    ----   attttcttcttcatctctctcacacaaaccccaaaaacgacagcgttttcaaaacccaaacaccagtcgacgcttttggaccttcctttcttcctccttg  6546400                                                                            <-----------GT1          --------->MYB52(1)                                        --------->TOE2(3)          <-----------GT1                                         <---------ARR11(3)         --------        <---------WOX13(1)            ---------->DOF2            --------->RVE1(1) --------->LBD16     <---------YAB1         --------->ANAC46                --------->TOE2(3)     --------->HSFB2a(2) ------CCA1(2)              <---------ALFIN1     <---------GLK1(2)--------->ARR11(3)         -------- ------>ID1           <---------GLK1(1)        <---------YAB1------>ZmHOX2a(1)  --------->ANAC46   tctctctctgattaaccgatttcgatttccccacaatgccaaaagggttttgattctctcttcctaaaaatctcaaatttacacccagaaaaaaacccta  6546500                                                                    --------->MYB52(1)                                                                   ----------->TGA1                                                                   ----------->HVH21                                                                 <---------At4g35610                                                                 --------->At4g35610                                                                 ----------->RAV1(2)                                                                 <---------ZAT2                                                                 --------->ZAT2                                                               <-----------RAV1(2)                                                           --------->GLK1(1)                                           --------->GLK1(1)------>ZmHOX2a(2)                                      =============================HOX2a_HOX2a      <---------ARR14(2)                                      ------>ZmHOX2a(1)    <------ZmHOX2a(2)        --------->ARR14(2)      <----------DOF2                 ============================HOX2a_HOX2a      <-----------HVH21     ------>ZmHOX2a(2)             ================================HOX2a_HOX2a    --------->LBD16     =====================================HOX2a_HOX2a     --------->ARR14(2)    <---------LBD16   <---------ARR11(3)              ------>ZmHOX2a(1)      <---------ARR14(2) --------->At4g35610   --------->ARR11(3)          --------->ARR14(2)    <---------WRKY18(1)    ------->TEIL  <---------ARR14(2) ->TOE2(3)       --------->ANAC46  ===============================HOX2a_HOX2a<---------At4g35610 ->TOE1(3)      --------->ZAT14<---------ARR14(2)   ----------->HVH21    <---------REM1(1)--------->ARR14(2)   atttcgatctttaatctctacgctctctaatgggttcctcctccgatatcgtccctgaccgatctccagctgacgatgtagctccggttacagataccaa  6546600                                                                     <---------At4g35610      <------NtERF2                                                                  <---------ZAT2            <--------                                                       <-----------HVH21                    <--------                                                      <---------ZAT6 --------->At4g35610   --------->ATERF1(1)                 ----------->HVH21              <---------------AtSPL3                     <---------LBD16                 --------->WRKY12              <---------ANAC46   <---------At4g35610      <------NtERF2               <----------DOF2                 <---------ANAC58   --------->ZAT2<---------ARR11(3)          <------ZmHOX2a(1)                <---------LBD16        --------->At4g35610     <---------RAP2.3(1)          --------->ATERF1(1)             --------->HSFB2a(2)   ---------->CDC5 --------->ARR11(3) --        --------->ALFIN1   <------ZmHOX2a(1)   <---------ANAC58 <-----------RAV1(2)  ---------->DOF2   ---------->DOF2 ---------->ID1      ------>ZmHOX2a(1)<---------MYB52(1)<----------DOF2<---------DEAR3(1)   aattccaaaggaggagcctttgacgcttaggagaacgcgtccttctcgggcttgtactgttagggctcagcagcggcttcaagagcttcaagcggcggag  6546700                                                                            --------->ARR11(1)                                                                     <---------At4g35610                                                                     --------->At4g35610                      ----------->GT1                             =================================HOX2a_HOX2a            <------NtERF2                                         <------ZmHOX2a(1)           ------>NtERF2                                     --------->ALFIN1               <------ZmHOX2a(2)          --------->RAP2.3(2)                             <---------AtMYB61 <---------ARR14(2)          --------->RAP2.6(2)               <---------LBD16  <---------ANAC46       <------ZmHOX2a(1)          --------->RAP2.3(3)             ----------->HVH21<---------MYB46(3)       ===============HOX2a_HOX2a -ANAC46<---------At4g35610        --------->At4g35610    <---------DEAR3(1)--------->ARR14(2)     <- -DEAR3(1)--------->DEAR3(1)       <---------At4g35610 --------->ALFIN1    <------ZmHOX2a(1)========= -------->DOF2       <------ZmHOX2a(1)--------->At4g35610 --------->ALFIN1 ========================HOX2a_HOX2a   agaaagcttaagccgcctaagaaggagtataaacgagagcagcatcgacggagagaagaggtggtggaggaagatgaggattcggaggatgacgatcaag  6546800                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                <----                                                                                                -----                                                                                              -------                                                                                            <------NtERF2                                                                                            <--------                                                                                           --------->MYB52(1)                                                                                           ------>NtERF2                                                                                          --------->DEAR3(1)                                                                                          <---------ALFIN1                                                <---------ANAC58      --------->ATHB12   --------->MYB46(3)                                                <---------ANAC58      <---------ICU4    --------->LBD16                                                <---------ANAC46      --------->YAB1    ------>NtERF2                      <---------YAB1       <---------ANAC58          <---------ATHB12  --------->ANAC58            <---------LBD16                <---------ANAC58          --------->ICU4    --------->ANAC46           --------->MYB52(1)       --------->ANAC58      --------->ARR11(3)           --------->ANAC58 -----ZmHOX2a(1)   --------->ICU4 --------->LBD16         <---------ARR11(3)          <---------LBD16 =====HOX2a_HOX2a<---------At4g35610--------->ANAC58  <------ZmHOX2a(1)   XXXXXXXXXXXXXXXXXXXX>MIR413   aggatgaagagaacgacggagatgatgagagtaatccgaagcaatgcgttgctggaggaagttctactaaaatcattacttctcttgttccgccaccgga  6546900  Previous    Next  AGI:  At1g18950.1    Description:  aminoacyl-tRNA synthetase family. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62478.1); similar to aminoacyl-tRNA synthetase [Trifolium pratense] (GB:BAE71190.1) Range:  from: 6546390    to: 6551878    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version