Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <-------MYC2                                    ------->MYC4                                    ------->MYC3                                    <-------MYC3                                    ------->MYC2                                    <-------PIF5                                    <-------MYC4                                    ------->PIF5                                   <---------ANAC46                                   <---------ANAC55(2)                                   <--------ABF1                                   --------->O2                                   --------->TGA1a                                   <---------TGA1a                                   <---------O2                               ==============MYC_MYB                               ------->GAMYB                              --------->ANAC58                              --------->ANAC58                              --------->ANAC46          --------->LBD16                              --------->bZIP60(2)      <---------HSFB2a(2)                         --------->ANAC46              --------->HSFB2a(2)                         --------->ANAC58              --------->ANAC55(2)                --------->ANAC58  ------>NtERF2        <---------ANAC58          <---------ANAC46   >>>>>>>>>MYB2             <---------ANAC58      <-----------HVH21======================bZIP_DOF <---------LBD16  <------ZmHOX2a(1)    ---------->DOF2             <---------ANAC58               <---------ARR14(2) ----->MYB52(1) --------->ANAC58 <---------ALFIN1  <---------ANAC58        <---------ANAC58      ---- ---ZAT6 <---------LBD16 --------->ANAC58       ----------->ARR10          <---------ANAC58      ----   aacaggacagtcacgggcaagacatgaaagcaacgccacgtgtaatagcgaagacttgcggaacatttttgttgaagacttgcgaaacttggggagggca  6528600                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                           ---------->DOF2                                   --------->ANAC46                         --------->MYB46(3)                                  --------->ANAC58                        -------->P                                           --------->ANAC58                        <-----------------AGL1                    <----------DOF2  <---------ARR11(3)      --------->ANAC46 --------->MYB52(1)                <---------ARR11(3)---------->DOF2  <-------- ----->ANAC58        <---------MYB52(2)     ---------->DOF2  <<<<<<<<<TBF1<---------WRKY45  --------- ----->ANAC58 --------->ICU4    ----------->GT1   --------->At4g35610     <---------WRKY38(1)   aggcttctacgttgcaattaagaactaaccaaagtggaaaataacaaaaagaagctcaatttcttcttctttttagtcaaagccatatattcttctataa  6528700         --------->ANAC55(1)         --------->ANAC55(2)         <---------ANAC55(2)                                 --------->YAB1 <-----------GT1         --------->ANAC46  --------->TOE2(3)           ------->TEIL      <---------ICU4   ---------->DOF2        <----------ID1            <---------ANAC55(2) --------->AHL20(2) -HSFB2a(2)      <----------DOF2                    --------->ANAC55(2) --------->ICU4 >HSFB2a(2)      ------>ZmHOX2a(1)            <---------AHL20(2)   ----------->GT1           --------   ctccataaaacacataatcctttttaaaaccacaaaaaatacttcgaatttatcatgtatcaaacaaaatagaaatatttactggctaattgagagaaag  6528800                                                                 <------MYB83                                                                 <---------ANAC55(1)                                                                 <------MYB46(1)                -----                                                                 <---------ANAC46               <----               --------->AHL20(2)                                <---------ANAC55(2)          <------          ----------->GT1                --------->GLK1(1)       --------->ANAC55(2)   <---------TOE2(3)     ---------->DOF2                ----------->GT1             --------->MYB111(1)   ---------->DOF2   <---------YAB1            <---------TOE2(3)           --------->ZAT6              --------->AHL20(2) -->DOF2 ----------->GT1     <---------YAB1         --------->YAB1                   <---------AHL20(2)   aagttatgaaaggggaataaaaaaaactattaagaatggggagaattcttgtaagaataagactattaggtgttatttggaaactaattaaagatgaggg  6528900                                                                                            ---------                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                   <---------ATERF1(1)                                                                                   --------->At4g35610                                                                                <---------At4g35610                                                                                <------NtERF2                                                                                <---------ZAT2                                                                                --------->ZAT2  -----      <-----------------AG              ---------->DOF2           <---------ARR11(3)    <---------ANAC58 ------>GT1  <---------TOE2(3)        ----------->TBP     --------->DAG2   *TSS --------->At4g35610 < -----ANAC46 --------->MYB59----------->GT1              ---------->DOF2 <------------CBF--------->LBD16 ---ANAC46   <---------TOE1(3)----------->GT1  ----------->GT1    --------->ARR11(3)--------->ATERF1(1)   gtatatttgaaagtttaggtaagagaaatgaagtgaaaatataaaaggagagcaaaaaaaaaagttgagaccttgaattggcagcagcctccgtgtgtgt  6529000        <---------ANAC58        <---------ANAC58      <---------YAB1   --------->ARR14(2)   <---------ARR14(2)  ------>MYB46(1)  ------>MYB83                                               <------ZmHOX2a(1)             --------->AHL20(2) >ALFIN1<---------AtLEC2                               --------->O2                        <---------AHL20(2) ------>HVH21                                     ------>NtERF2              <---------CCA1(2) <----- ---------MYB59<------ZmHOX2a(1)                 --------->ANAC46 <----------ID1          --------->AHL20(2)   gaccaaatatgcttggaggagagtagaagaacgcttcttctctcaatttcgacgacaacgtgaggaagaagacgaactcgtctctctctctatttatttt  6529100                                                                    <---------At4g35610                                                                  <-----------RAV1(2)                                                         ------>NtERF2                                           --------->MYB52(1)<---------MYB52(1)                  <---------ZAT14          ------>MYB83 <---------ALFIN1                  --------->ZAT14          ------>MYB46(1)<------NtERF2             <---------GLK1(1)           <---------MYB59--------->DEAR3(1)             <---------ARR14(2)    --------->YAB1     <-----------TGA1      <---------LBD16             <---------YAB1     --------->ANAC58     ----------->RAV1(2)        --------->YAB1       --------->ANAC58     --------->At4g35610        <---------ICU4       --------->ANAC46     <----------DOF2    ------>ZmHOX2a(1) <---------ARR11(3)<---------AtLEC2<---------ICU4  <---------DOF5.7(2)----------->HVH21    ------>ZmHOX2a(2) ------GT1   --------->GLK1(1) <---------ATHB12  --------->DOF5.7(2)--------->At4g35610  --------->ARR11(3)   caatatcacctggagaattctgcagggacatcaataatcataacctaacaagttaacgccaccgtttttcaggtgacttttgtgttctattgatcctgct  6529200                                                               <---------ARR14(2)                                  --------->ANAC46          <---------ANAC58                               <---------ZAT18              <---------ANAC58                               --------->ZAT18              <---------ANAC46                               --------->ZAT14         --------->MYB52(2)                         <--              <-----------GT1  <---------ZAT14       <---------MYB52(1)                <---------RAP2.6(3)         <----------DOF2   <---------ICU4         ---------->ID1                 <---------ICU4  ---- --------->ARR11(3)  --------->TOE2(3)           <-----------GT1       <---------YAB1  ------>NtERF2 <-----------ARR10   --------->TOE1(3)       <------------------------ANAC81    --------->ICU4 <----- <---------ARR11(3)  --------->YAB1     <---------GLK1(1) <-----------GT1      <---------KAN4(2)<----   taaaatctcacctttgttactaatcttaatcagtgcacgacgatttctgtttttcgttttttgcgtttccattacgatgggaataatgccgagatgggtt  6529300                           <---------At4g35610                           --------->At4g35610                --------->HSFB2a(2)                                      <-------TEIL      <-----------GT1  <----------DOF2                                  --------->CCA1(2) -------LBD16<---------ARR14(2)            <---------AHL20(2)           --------->GLK1(2) ------------------->TaNAC69(2)            --------->AHL20(2)        ----------->ARR10      --------- ----GLK1(1)<---------CCA1(2)     <----------DOF2              <---------MYB52(1)          <---------GLK1(2) -----ARR14(2)  <---------HSFB2a(2) ----------->GT1      ----------->HVH21               ----------->ARR10   tctgggtttaacgcgtttctcgagactttagctcaactttgtaaattaaaaaacttttgatgaccggtagtgagattcgaatgtgatcaagtagattcta  6529400                         <---------YAB1                     --------->ARR14(2)                     <---------ARR14(2)                                                       -------                     <---------GLK1(2)                                                --------->At4g35610                    <------ZmHOX2a(1)                                                 <---------At4g35610       <---------At4g35610                                                      --------->ALFIN1       --------->At4g35610   ----------->GT1             <------MYB83 <---------KAN4(1)     --------- >GLK1(2)       ---------->DOF2<----------ID1            <------MYB46(1)      <-----------RAV1(1)   atgtgaatcagatgtcgaaaaaggattcttatggtgacaaaatcgaaattttgagcatttggttagaattgaatgttctaatgtgggaagcagagaaagt  6529500  Previous    Next  AGI:  At1g18900.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G74750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62487.1); similar to Os12g0638900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067384.1); similar to hypothetical protein OsI_038011 [Oryza sativa (indica cultivar-group)] (GB:EAY84052.1); contains InterPro domain Smr protein/MutS2 C-terminal (InterPro:IPR002625); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6528975    to: 6532605    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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