Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------ZAT18                 --------->MYB46(3)                <------ZmHOX2a(2)                                                                   <                <<<<<<<<<<<<<<<<<LFY                                                      <----------DOF2                >>>>>>>>>>>>>>>>>LFY                                                   <-----------GT1               --------->ARR14(2)       <----------DOF2      <---------ZAT18     --------->AHL20(2) -               <---------ARR14(2)    <---------MYB52(1)      --------->ZAT18     <---------AHL20(2)--   gcctagatgccctagacgatccactgggctctacaaaccgttcttttccaatatcaaattttgtgaactagcccaaattgtttttaatttttcttttcaa  6488900                                                                                                    <                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                            -------->ATHB1                                                                                           <---------ATHB12                --------->ANAC55(2)                                                      --------->WOX13(1) ---------AHL20(2)                 <---------YAB1                              <---------AHL20(2)   - -------->AHL20(2)      --------->TOE2(3)    --------->TOE2(2)                --------->AHL20(2)    - ------->AHL20(2)     <---------AHL20(2)    --------->YAB1                    <---------AHL20(2)    <   atttaaaaatatgagtttacatattaacttaaaaaatatgagtatatcatacgtctaaatttgataactagcccaatgtattaattttaaacaatcattc  6489000                    <---------AHL20(2)                --------->AHL20(2)     --------->YAB1--------->ARR11(3)     --------->AHL20(2) --------->AHL20(2)--------->AHL20(1) <---------AHL20(2)<---------ARR11(3)       ---------->DOF2 ---------AHL20(1) <---------AHL20(1)    --------->YAB1 ->WOX13(1)   --------->AHL20(2)   --------->TOE2(3)                             <---------RVE1(1) -ICU4    ----------->GT1       <-----------GT1                            --------->MYB52(1) >YAB1<---------AHL20(2)      <-----------HVH21  <----------DOF2          --------->ICU4 -------->AHL20(2) --------->AHL20(2)   <---------YAB1                    <---------ATHB51 <--------- -------->AHL20(1) <---------AHL20(2) --------->YAB1                 ----------->GT1       ========== ---------AHL20(2)--------->AHL20(2)<----------DOF2          <-----------GT1     <---------CCA1(1) --   aatttaataaaaatgaaaaaatatattttagttgtcacctttataataaagcttttgtgctattatccaaatggaaataatggatattttggtctttggg  6489100                 <---------ANAC46                 --------->ETT(1)              ----------->HVH21              --------->ALFIN1            <---------ANAC58            --------->TGA1a            <---------O2            <---------ANAC46            --------->O2            <---------bZIP60(2)            <---------TGA1a            ================================================bZIP_DOF            <---------ANAC55(2)            --------->ANAC55(2)            <---------ANAC58                                          -------->P            <---------ANAC55(1)                                     <---------MYB111(1)           ----------->STF1                  --------->AtMYB61      <---------MYB52(2)         ----------->HVH21                  --------->MYB46(3) --------->ANAC55(2)   --------->ANAC46                     --------->ANAC46       --------->ANAC58   --------->ANAC58     <---------YAB1  --------->ANAC58       --------->ANAC58   --------->ANAC58 <------------CBF    --------->ANAC55(2)    --------->ANAC46           -----------  ====================MYC_MYB           <---------ANAC55(2)    <---------ANAC55(2)        <---------AHL20(2)  ------->GAMYB<-----------HVH21        --------->ANAC58  <---------ICU4  <---------MYB52(1)      --- -DOF2   ----------->TGA1         --------->ICU4 ---------->DOF2   --------->HSFC1(2)     --------->AHL20(2) =====================bZIP_DOF    <---------ZAT6--------->AtMYB61 <-----------ARR10     ----------->TBP --------->RAV1(1)  <---------ARR14(2) <---------LBD16  ----------->RAV1(1)           ---------------   acaacacacaaatgacgtgtcggattgtgaatggtagtgatcacggaccaccaaagtccaacattacgaaactacccttactcgtttactatatatatac  6489200                                                          <---------ALFIN1               ----------->RAV1(1)                       --------->LBD16 >TBP      --------->ETT(2)                              <---------ZAT18 ------>ANAC46--------->REM1(1)       <---------GLK1(2)  --------->ZAT14                            < >AGL15    <---------ETT(2)  <---------ICU4              <---------ZAT14   <----------DOF2   --------   acctaagtttttgtctacaacattcgaaaactcattacaaaattctctctgtttccctccgcactcttgagaaatcgctttcttcgagtcactctcacaa  6489300                                <-------GAMYB                                               ------>ZmHOX2a(2)                               <---------ANAC58   --------->HSFB2a(1)                      <------ZmHOX2a(2)                               <---------ANAC58   <---------HSFB2a(1)                     --------->ARR11(3)                            <----------DOF2       <---------HSFC1(2)                      <---------AGP1                        ------>ZmHOX2a(2)        ---------->TaMYB80                       <---------ARR14(2)                       <------ZmHOX2a(2)        <---------GLK1(2)                         <---------ARR11(3)                       --------->CCA1(2)        --------->ARR14(2)              --------->LBD16 <----                       --------->ARR14(1)       <---------ARR14(2)              <------NtERF2   <----                      --------->ARR11(3)       <------NtERF2        --------->LBD16       --------->ARR14(2)                      <---------ARR11(3)      --------->LBD16      --------->RAP2.6(2)   <---------CCA1(2)                      --------->ARR14(2)     --------->RAP2.3(2)  <---------LBD16<------NtERF2  <----                      --------->AGP1        <------NtERF2<-------TEIL<------NtERF2 --------->At4g35610                      <---------ARR14(2)    --------->RAP2.3(1)  --------->ZAT2<---------DEAR3(1)       ---------->DOF2--------->ARR11(1)    <---------LBD16      --------->At4g35610    ----------->ARR10 ------------CBF    ----------->ARR10      ------>NtERF2<---------MYB52(1)    <---------LBD16<------- ---->CBF          <--------P  --------->MYB52(2)--------->ARR14(2)--------->ANAC46--------->ZAT14<--   tggattgcataaagagtattggtagatccgctttcgttgccatcgcgccggaatctccgttcatagcagccggaacaatggccggagcagtagatctttc  6489400                        ------>ZmHOX2a(2)                      --------->ARR14(3)                      <---------ARR14(2)                      <---------ARR14(3)          --------->LBD16          ------>NtERF2<------ZmHOX2a(2)                                 <---------WRKY38(1)         ------->GAMYB--------->AGP1                                     <---------WRKY12         --------->ANAC58                                               --------->WRKY18(1)         --------->ANAC58                                  <---------------AGL15         --------->ANAC46                                --------->At4g35610       <---------At4g35610                          ------>ZmHOX2a(2) <------MYB83 -----ANAC58          --------->ARR14(2)           <------ZmHOX2a(2)  <------MYB46(1) -----ANAC46          <---------ARR11(3)         ------->GAMYB--------->ZAT6                --------- -----ANAC58  <---------ARR14(2)                --------->MYB46(3)   --------->MYB59   <---------ANAC58 ---DOF2--------->MYB46(3)            <-----------GT1    <---------At4g35610           <---------ANAC58 -------MYB52(1)      --------->ARR11(3)        <---------MYB52(2)  <--------P  ---------->DOF2   gtttagttcatccgccaatctcgagatctttgaactcgattttcagtccaacgatcgtgagctaaaactagtaggtcaatgccaaagttccgagcggttt  6489500                                                              <---------ANAC46                                                            --------->MYB52(1)                                                   <---------MYB46(3)                                              <---------LBD16<---------LBD16               <------MYB83               ----------->ARR10   <---------AtMYB61       ----------->HVH21               <------MYB46(1)           --------->HSFB2a(2)    <---------MYB52(1)       --------->WRKY12                ----------           <---------HSFB2a(2) ------>ZmHOX2a(2)  <---------AtMYB61                        --------->ANAC55(2)       <---------ANAC58       <------ZmHOX2a(2)  <---------MYB52(1)                        <---------ANAC55(2)       <---------ANAC46      <---------ARR14(2)<---------DEAR3(1)                         --------->MYB46(2) -->GT1<---------ANAC58      --------->ARR14(2)<---------DREB2C(2)        <----------DOF2 --------->MYB59   aatcgactcgcttggggaagttatggctctggatccgatggtctcatagccggtggtctagttgacgggaacatcggtttatggaatccaattaggtgat  6489600                                                      ---------->DOF2                               <                                                   <---------ANAC55(2)     <-----------GT1          <             <---------WOX13(1)              --------->ICU4       ===================================        --------->TOE2(3)                    <---------YAB1       <----------DOF2         ----------- ->GT1  --------->TOE1(3)<-----------GT1  <-----------GT1      <-----------GT1            --------->At4g35610   tttccctaaaccctaattgaaatctattagcctctcttcaatttatactgattatgtaaagtattttactttgtatttatcagttctgagtctggtgaaa  6489700    --------->TGA1a    =================================bZIP_DOF    --------->ANAC58    --------->ANAC46    <---------TGA1a    --------->ANAC58                                                --------->LBD16   <---------TOE1(2)                                               --------->HSFB2a(2)       -------- <---------ZAT18                             <---------ARR14(2)    <---------HSFB2a(2)--------->MYB52(2) ---------ANAC58                             --------->ARR14(2)   <---------LBD16   <---------MYB52(1) ---------ANAC58                             ------->TEIL ---------->ID1           --------->TOE2(3) =============bZIP_DOF        <------ZmHOX2a(1)      <---------MYB52(1)       <-------TEIL  <-------- >GT1                     ---------->DOF2   <---------CCA1(2)   <-----------GT1   ----------->GT1   -   ttgcgcacgttagagatttgtcaaaacacaaaggacctgtgagtttgtatcttctgttttgttttttttcccgatatatatacatcgttatttgatgtgt  6489800  Previous    Next  AGI:  At1g18830.1    Description:  transducin family protein / WD-40 repeat family protein. similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G63460.1); similar to Sec31p [Oryza sativa] (GB:BAB47154.1); similar to hypothetical protein OsI_026226 [Oryza sativa (indica cultivar-group)] (GB:EAZ04994.1); similar to hypothetical protein OsJ_024426 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40943.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 6489300    to: 6494209    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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