Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->LBD16                                          --------->ANAC46                                         <---------LBD16                                    <---------ANAC58                                               <-                                    <---------ANAC58                                            <----                                   <---------HSFC1(2)                                        <-------                                   --------->HSFC1(2)                    <<<<<<<ZML2         <------- ------>LBD16             <---------At4g35610                 ------>ZmHOX2a(1)            XXXXXXXXXX ->P                      --------->At4g35610 <---------DOF5.7(2)    --------->TOE1(2)  <---------ARR11(3)   cgtagaatggaacaacttcttcaaactgagatgaagatgcttctccgtaaacgtcttgctcatcctctaaacctagaacgtcttcttcaatatgttcagg  6476800                                                          --------->At4g35610                                                       --------->At4g35610                                                     <---------ICU4                                                     --------->YAB1                                                    --------->ICU4 -----ZmHOX2a(1)                                  --------->YAB1 --ZmHOX2a(1)                                <---------ANAC46  ----------->GT1 --LBD16                              <---------ALFIN1 <---------YAB1 ----RAV1(2)                   ---------->DOF2  <---------KAN4(2)                 ----------->GT1 XXXXXXXXXX>MIR390A/B   <---------ALFIN1----------->RAV1(2)  <------ZmHOX2a(1)  ------->TEIL   aggaatagcgattgtaagagtcatcaacactcttaaagcacaacctggagtataatcatcagaggaagttatttcatcgacgaatcgaaacaactctagt  6476900                                                                                       --------->LBD16                                                                              ---------->DOF2                                                                           --------->ANAC55(2)      <                                       <-----------HVH21                   <---------ANAC55(2)      <        --------->ANAC58            ------>ZmHOX2a(2)                  <-----------HVH21  --------->ARR14(2)        --------->ANAC58        ------>ZmHOX2a(1)                  <---------ALFIN1   <---------LBD16  <-------MYC3                ----------->RAV1(2)      --------->At4g35610 <---------ANAC46--------->CCA1(2)  ------->MYC3              <-----------GT1   <---------GLK1(1)  ----------->RAV1(1) <---------LBD16-   aacacatggtaagcatcgatgggagtgatttttcctgatcccgtcaagaattcagtaagctctacagcaacacagtcgcgtaaagaaaccgggatacaag  6477000                                        --------->YAB1                                       <---------YAB1                              <--------HAHB4                              --------->ATHB51                              <---------ICU4                             --------->ICU4                          <------ZmHOX2a(2)                                       <---------ICU4                         --------->ARR11(3)              <---------AtMYB61    <---------YAB1           --------->MYB52(2)<---------YAB1        --------->AHL20(1)         --------->ICU4         <---------MYB52(1)--------->YAB1          <---------ARR11(3)    --------->YAB1         <---- ---------ARR14(2)       <---------ARR11(3)  <----------DOF2       ----------->RAV1(1)     <---------ARR11(3) ---------GLK1(1) --------->YAB1     --------->YAB1<---------AHL20(1)    xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -------->GLK1(1)<---------YAB1 <---------YAB1     --------->ARR11(3)<---------ALFIN1      --------->ARR11(3)   agaattctgatgttagttcatcatagagatcataattactgatgatactttgatatattttggtcgtagcaacactgatattgattatgccaacatcttc  6477100                                               <---------ANAC58                                               <---------ANAC46                                               <---------ANAC58     --------->AHL20(1)                                          --------->ATHB12          <---------AHL20(1)                                          <---------ICU4            <---------AHL20(2)                                         <---------YAB1             --------->AHL20(2)                                         --------->ICU4            <---------AHL20(2)                                       <---------ICU4              --------->AHL20(2)                                       --------->YAB1          --------->AHL20(2)                               <------ZmHOX2a(1)             --------->YAB1             <-----------GT1     <------ZmHOX2a(1)         ================================HOX2a_HOX2a         <---------YAB1<--- <-------TEIL          ------->MYC3   --------->ICU4<---------KAN4(2)   --------->AHL20(2)       <--- -------RAV1(2)        <-------MYC3   <---------ATHB12  <------ZmHOX2a(2)<---------AHL20(2)  <-------   aggtacaggattgtgctcaatttcatgtgcgaaggatgaaatcatgatggcgagaacgatcaagaataaataaattttatcgattatgtttagccgttta  6477200                                                                        <---------AHL20(2)                                                                        <-----------TBP                                                                      <-----------TBP                                                                      --------->AHL20(2)                                                                    <-----------TBP                                                                    --------->AHL20(2)                                                                    <---------AHL20(2)                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                                <-----------TBP       <----------DOF2                                                              --------->AHL20(2)   <---------ARR11(3)                                                              <---------AHL20(2)   --------->ARR11(3)                                                              <-----------TBP --------->AHL20(2)                                                            --------->AHL20(2)<-----------TBP                                                            <---------AHL20(2)<---------AHL20(2)                                                            <-----------TBP --------->AHL20(2)                                                          <-----------TBP <---------AHL20(2)                                                          --------->AHL20(2)<-----------TBP                                                          <---------AHL20(2)<---------AHL20(2)                                                        <-----------TBP --------->AHL20(2)                                                        --------->AHL20(2)--------->AHL20(2)     <--- ------TOE1(3)              --------->YAB1              <---------AHL20(2)<-----------TBP        ---- ------TOE2(3)            <-----------TBP             <-----------TBP <---------AHL20(2)         ---- --MYB52(1)              ------->TEIL             ----------->GT1 <-----------TBP <---------CCA1(2)   gggttctcttgaagtaattcattcatgtatttataacagaggcctagatcgatggtatatatatatatatatatatatatatatatatctttagtagaaa  6477300       <------------CBF                                    --------->MYB52(1)     <---------YAB1                               ------>ZmHOX2a(1)                            <-----   --------->ZAT6                             <-----------GT1                             <----------DOF2 ------ARR11(3)                    <---------YAB1<---------MYB59                       <-----------GT1 ----->GLK1(2)                   --------->YAB1---------->ID1      ------->TEIL     <----------DOF2 ----->ARR11(3)    <---------GLK1(1) <------------CBF  <-----------GT1         ------>ZmHOX2a(1)   atctaatactattgggatttgatatcagtttacatttgtaattgtttttttcctaatttacaaacggtgtatgtttttttcctaagcttttactttcctt  6477400                                     <---------AHL20(2)                                     --------->AHL20(1)                                     <---------AHL20(1)                                     --------->AHL20(2)                                 --------->AHL20(1)                                 --------->AHL20(2)                                 <---------AHL20(1)                                 <---------AHL20(2)                             --------->AHL20(2)                  <---------ANAC46                             <---------AHL20(2)                 <---------TOE2(3)                             <---------AHL20(1)             <------------CBF                        ------------>CBF                   --------->ATHB12             <---------TOE2(3)         <---------ANAC46    --------->AHL20(1)           --------->ICU4                <---------TOE1(3)     <----------DOF2   --------->ANAC58                   <---------YAB1           <----------DOF2 -----DOF2             --------->ANAC58<------------CBF<---------YAB1     ------------>CBF          <   tttttttctttgggtataatttagcaaacaattaattaattaattgtttttgttaatctgattattgacgtttaaactcaatttccttttaagcttgaaa  6477500                                       --------->AHL20(2)                             ---------->DOF2                                       --------->AHL20(1)                           <---------YAB1                                       <---------AHL20(2)                         <---------ICU4                       <---------AHL20(1)                                         --------->YAB1                      --------->AHL20(2)   --------------->AtSPL8              --------->YAB1                    --------->AHL20(2)<---------AHL20(2)       <---------ALFIN1<---------ICU4           <----------ID1         --------->AHL20(2)---------->DOF2           <---------YAB1     --------->AHL20(2)--------->AHL20(1)  <---------------AtSPL8 <----------DOF2<---------YAB1 <----     <---------AHL20(2)--------->ARR11(3)  <---------ICU4 <------MYB46(1)   --------->YAB1      <---- ----------DOF2   --------->AHL20(2)  --------->AHL20(2)  <------MYB83   --------->REM1(1) --------->ATHB12   aactttataaattaagacaaaaaaatatatagttgattaaaaaaattagtacttaaaagttggtcacactttcttacatcatcatcatcaaagtaattgg  6477600                                                                                     --------->MYB52(1)                                                                                     ------>MYB46(1)         <---------TOE2(3)                                                           ------>MYB83         <---------TOE1(3)                                                         --------->MYB46(3)        ---------->DOF2                                                            <---------MYB55(2)       <---------AHL20(2)                        <---------ARR14(2)                --------->AtMYB61  --------->LBD16                                --------->ARR11(3)                <---------MYB111(2) --------->HSFB2a(2)                             --------->ARR14(2)                <---------MYB46(2) <---------HSFB2a(2)                             <---------ARR11(3)                <---------MYB111(1) -----ANAC58                                    <---------CCA1(2)                 --------->ANAC46 -----ANAC58                           ----------->GT1                     <---------AHL20(2)   gttccagatttaaagtttagtcaaacttcttacaaccaggtttgtaattcatatctccattgaaactatttagctatataatccaccaaactgaataagt  6477700  Previous    Next  AGI:  At1g18780.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G29840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74950.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6476249    to: 6477226    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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