Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    ------>NtERF2                                                                  --------->LBD16                                                          --------->ARR11(3)                                                          <---------ARR11(3)                                                          --------->GLK1(2)           ----------->RAV1(1)                <---------ANAC46   <---------LBD16         ------>NtERF2                       ------>NtERF2<-----------ARR10         --------->LBD16                   --------->ATERF1(1)   <---------ETT(1)                  <-        --------->ANAC58                  <---------At4g35610   --------->RAP2.6(3)             <----        --------->ANAC58                  --------->At4g35610   <---------LBD16                 <----        --------->ANAC46                 <---------DEAR3(1)  <----------DOF2                   ------       <---------LBD16                <---------GLK1(2)  --------->RVE1(1)     --------->DAG2  ------ ------>DOF2                     --------->MYB52(1)  --------->AHL20(2)       ---------->DOF2  ------   aaagaaaactccgccacaaaaatcccttcccaaaaaaacagagtcgctgcctgaattaaaaatctttccggcaaataccaaaaagtcagacagaagttag  6372900                                                                                                    <                                                                                                    -                                                                                               ------                                                                                         --------->ZAT14                                                                                         <---------ZAT14                                                                                         <---------ZAT18                                                                                         --------->ZAT18                                                                                       <-------------                                                                                       --------------   <---------AHL20(2)                                                                 <---------ANAC58 <----------DOF2        <------MYB46(1)                                              --------->MYB111(2) ------TEIL             ----------->GT1               ---------->ID1                 --------->MYB46(2) --MYB83                <------MYB83              <---------ANAC46                   <---------AtMYB61 --MYB46(1)            --------->MYB46(2)         <---------ANAC58    <---------ANAC58<------MYB83 <- --->MYB59 <---------------AtSPL8        <---------ANAC46             <---------ANAC58<---------ANAC46 --->MYB46(2)          --------->MYB59  <---------LBD16               <---------AtLEC2<------MYB46(1) --->MYB111(1) <-------TEIL  --------->ICU4       <---------ANAC58    <---------ANAC46<---------ANAC58   gttcttttattttcaagtacatagtttggtaataactggagtttcggagtttgcttgttgtttatcgaagttgcatgtcaaaagagtttggtgtactata  6373000                                   --------->MYB52(1)            --------->MYB46(3)                                   <---------ICU4               ------>MYB46(1)                            --------->HSFB2a(2)                 -------->P                      <---------------AGL15                     ------>MYB83                      --------------->AGL15                    --------->MYB55(1)     --------->ATHB12----------------->AGL2                    --------->MYB52(1) ---------ARR11(3)   ----------------->AGL3                   --------->AtMYB61 -------->ARR11(3)   <-----------------AGL3                  --------->MYB46(3) ----->TBP       ------->TEIL      --------->YAB1       --------->YAB1          <-----------GT1 --AtSPL8       <---------GLK1(2) <---------ATHB51  <------ZmHOX2a(1)  <-----------GT1         ------ ->AtSPL8 <-----------GT1   <---------HSFB2a(2)    ----------->GT1----------->GT1            -------- --------CCA1(2)<---------CCA1(2) --------->ICU4  <---------TOE2(3) <---------MYB52(1)      ---------   tatatcttgatttaacttgaatctctatttttagaaataatggttttagaataaggaataaaaaccaaccgttaaacagttttaacctatttcaaaaagc  6373100                                                                            <-----------GT1         -                                                                       <----------DOF2              - <----------DOF2 <---------ARR11(3)                                ---------->ID1                   - --->At4g35610   --------->ARR11(3)                                <---------CCA1(2)            ----- ->DAG2        <---------TOE2(3)                               <---------ANAC58                 ----- ->DOF2  <---------ZAT14             --------->MYB52(1)        <---------ANAC58                 -----   tgtctttagactaaactaaggtcttaaaactcaaaaacaaaactgatacctctctgttcttgattccttgtctctttgttacaacctcttcatatatcac  6373200                                                                 <-------TEIL                                                                --------->CCA1(2) -------->ANAC46                                                --------->ARR14(1)                  - -------->ANAC58                          --------->ATHB12     <---------ARR14(2)                  -- -------->ANAC58                         ------>ZmHOX2a(1)     --------->ARR11(1)           --------- ---->ANAC58     --------->ANAC46      <-----------------AG    --------->ARR14(2)        ------>NtERF2 ---->ANAC46  --------->ARR14(2)    <---------GLK1(1)       <---------------------WRI1  <---------ETT(2) ---->ANAC58  <---------ARR14(2)    --------->GLK1(1)   <-----------HVH21        ------------>CBF <--   acaagtcaaaacatcatatactctacgagtcattttagatttcctgatttgcaaaaaatgtcagagatacgaacagggttcttaacaatggcgaccataa  6373300                                                                                                  <--                                                                                              -------                                                                                             <-------                                                                         --------->MYB52(1) <--------                                                                     <---------HSFB2a(2)    <--------                                                                     --------->HSFB2a(2)  ---------->ID1                                ----------->GT1                      --------->LBD16    <---------ANAC58 ----->ZmHOX2a(1)       <---------ANAC46                         <---------ARR14(2)     <---------ANAC46 ------->TOE2(3)     ----------->TGA1                            ------->TEIL           <---------ANAC58 >YAB1               ----------->HVH21                           --------->ARR14(2)  <---------ARR14(2) -------ICU4       <---------ICU4                       <---------HSFB2a(2)          --------->ARR14(2)   tccttatatgcataggcttaacaatgacgggaacaggtttatattacagaaaaacagtctcgaaatgtatccgagaaacggatggcagtttcgtcgtcat  6373400                                                   --------->ANAC58                                                   --------->ANAC58                                                  --------->WOX13(1)                                    --------->ANAC46                                    --------->ANAC58         ------->TEIL                                    <---------ANAC55(2)      <---------TOE1(2)                    ---                         <---------MYB52(1)   <---------bZIP60(1)                                ---- -------MYB46(3)     ------>ZmHOX2a(1)        --------->bZIP60(1)                       --------->ARR11(3) -->ATHB12          --------->TOE2(3)      <-----------RAV1(1)                          <---------ARR11(3) --YAB1   <---------ANAC58          --------->ANAC58 --------->YAB1                    --------->YAB1 ---TGA1  <---------ANAC46          --------->ANAC55(2)      <---------TOE2(2)        <---------ATHB12 ---HVH21 <---------ANAC58      <----------DOF2<-----------HVH21           --------->REM1(1)     ----   tggtttgctcttgctggtgattcctcagtttgctctttacgcaatctgttgtcactcaaaacgtatgttcacaatctacatctatgcaatgatattcgta  6373500                                                                                      ------->GAMYB                                                                                      --------->DREB2C(2)                                                                                      --------->RAP2.6(2)                                                                                      --------->DEAR3(1)                                                                           <------ZmHOX2a(1)                                                                         <---------TOE2(3) --------->ANAC58                                                                      <----------CDC5--------->MYB46(3)                                                                     <---------ZAT2  --------->DEAR3(2)                       ---------->DOF2                               ----------->RAV1(2)   --------->ANAC46                    <----------DOF2                                  --------->At4g35610   --------->ANAC58                  <---------------AGL15                              <---------At4g35610   --------->AtLEC2           <---------RAP2.6(2)                                       --------->ZAT2  <------------AtMYB77       ------>ZmHOX2a(1)                                            --------->LBD16 --------->SPL7 ------>ICU4<---------MYB46(3)        --------->ANAC46            <---------LBD16  --------->MYB52(1) ----->ANAC58     --------------->AGL15----------->RAV1(1)   --------->ANAC58 --------->DAG2 ----->ANAC58<------NtERF2            --------->REM1(1)      --------->ANAC58---------->DOF2        <   agcattgtccttggtggctactctttaaagtgtttcatctacaacacaacctttggaatcgccaagaacccggctgaggaaaagcgaaccgccaagcaat  6373600                                             --------->ZAT18                                        XXXXXXXXXXXXXXXXXXXX>MIR397B                                       --------->ANAC58                                       --------->ANAC58      --------->ANAC58                 <---------ANAC55(2)                      --------->ANAC58      --------->ANAC58                 --------->ANAC55(2)        --------->At5g28300  <------MYB83                        <---------LBD16        <---------YAB1     ------>NtERF2  ------  <------MYB46(1)                    --------->MYB52(1)    --------->YAB1       --------->ANAC46 --------->MYB46(2)             ---------->DOF2            <---------ICU4       --------->ANAC58 --------P        ---------->DOF2  <-----------HVH21 --------->YAB1    --------->TOE2(3)      -------   tggtaggcaggctagtccctgaaagtaaacttgcaaaagtcacggagtgcatcattcataaccatgactgtaacttcaatgccagccaaaacagcaatgt  6373700                     --------->bZIP60(2)                     <---------At4g35610                   <-----------GT1                 <-----------HVH21                --------->bZIP60(1)                <---------bZIP60(1)                                                                --                --------->TGA2(1)                                                                 ---          <---------AHL20(2)                                                                     ----          --------->AHL20(2)                      <------ZmHOX2a(2)                          --------        --------->ANAC55(2)                      --------->ARR11(3)                          --------   --------------->AtSPL8                   <---------AHL20(2)                               --------   <---------------AtSPL8             --------->YAB1              --------->YAB1            <--------   <---------------AtSPL3             ----------->GT1             <---------ICU4            ---------   --------->MYB111(1)           <-------TEIL---------->DOF2     --------->ICU4            <---------ANAC46  <--------P  <---------ICU4 ------>ZmHOX2a(1)   <---------ARR11(3)             <---------TOE2(3)---- --->ATHB12  --------->ICU4  <---------YAB1 --------->AHL20(2)   <---------ATHB12          <---------ANAC58 -->ICU4<---------ANAC55(2)  ============================HOX2a_HOX2a<---------YAB1         <---------ANAC58   ttgggtaagtacttaattatgtcacctcatcctgattcattcgtaataaaagatcaattctctaacaatgatgatatatatagaggtattgctgcgcgca  6373800  Previous    Next  AGI:  At1g18500.1    Description:  IPMS1/MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase. Identical to 2-isopropylmalate synthase 1, chloroplast precursor (IPMS1) [Arabidopsis Thaliana] (GB:Q9LPR4); similar to IMS1, 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT1G74040.1); similar to 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A) (Alpha-IPM synthetase A) (GB:O04973); similar to 2-isopropylmalate synthase 1 [Brassica insularis] (GB:ABA26446.1); similar to Putative 2-isopropylmalate synthase [Brassica oleracea] (GB:AAW81741.1); contains InterPro domain 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; (Int Range:  from: 6369340    to: 6373018    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g18510.1    Description:  TET16 (TETRASPANIN16). similar to TET17 (TETRASPANIN16) [Arabidopsis thaliana] (TAIR:AT1G74045.1); similar to Putative hypothetical protein [Brassica oleracea] (GB:AAW81742.1) Range:  from: 6373288    to: 6374083    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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