Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------bZIP60(1)                                         <---------ARR14(2)                                         <-----------ARR10                                         ------->TEIL                             <---------ARR11(3)     --------->bZIP60(1)                             --------->ARR11(3)     --------->REM1(1)                      ----------->GT1    --------->GLK1(2)         ------>ZmHOX2a(2) <---------TOE2(3)    <---------ANAC58       --------->ARR14(2)  <---------TOE1(3)    <---------ANAC58    <----------DOF2       <---------ARR14(2)  <---------YAB1--------->ARR14(2)       --------->At4g35610 -------ID1     --------->YAB1           <---------ARR11(1)--------->YAB1    <----------DOF2  <------   ctacaaatagatcggcaatgagaaatgttaagatttcatttcgaatctgtgcttacatcactgataacagctttcacaactttgttaagagtgtctcttt  6368900                                                                                                 <---                                                                                                 ----                                                                                                 ----                                         <---------YAB1                                          ----                                      <---------MYB52(1)                                   --------->ARR11(3)                                     <-------GAMYB                                         <---------ARR11(3)                                    ------>ZmHOX2a(2)           --------->MYB52(1)         <---------                                   <------ZmHOX2a(2)  ----------->GT1                    <---------AHL20(2)                                  <---------ARR11(3)  >>>>>>>>>>E2Fe                    --------->AHL20(2)                                  --------->ARR11(3)  >>>>>>>>>>E2Fa               <------NtERF2 ----                              ---------->DOF2         >>>>>>>>>>E2Fd              --------->ANAC46                            <------ZmHOX2a(1)      <---------LBD16                --------->ANAC58 <-----------GT1            ===============HOX2a_HOX2a>>>>>>>>>>E2Fc              --------->ANAC58--- ----DOF2                   ==============HOX2a_HOX2a--------->LBD16             --------->ZAT18<----   gtttcacaacttaatcggaagagaagtagaggaaaagatcgttacgattatccagcgggaaaaaaaaaacgaattctaatgtgcccgctataaaatcttc  6369000 ------HSFB2a(2)    ----------->RAV1(2) ----->HSFB2a(2)    <---------At4g35610 ----->ANAC58       --------->At4g35610                       --------->AHL20(2) ----->ANAC46       --------->ZAT2                            <---------AHL20(2) --ARR10            <---------ZAT2                           --------->AHL20(2) ----->ANAC58      ------->TEIL--------->YAB1                <---------AHL20(2)                     - ------>LBD16     <-----------RAV1(2)              <---------ARR14(2)                    <---------At4g35610 -----LBD16     <---------REM1(1)                  --------->ARR14(2)      <-----------GT1     <<<<<<   cgcaagagtgtaacagtgatgcagctgaatcaataagactgtcttcttctccgaatttgaaaattaaattccagttttttcagtttgactctgcttcttc  6369100                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               ======                                                                                               ------                                                                                               ------                                                                                           <---------                                                                            <---------------AGL15                                                                            ------------>CBF   <-----                                                  <---------ATHB12          --------------->AGL15                                  <------ZmHOX2a(1)                        <-----------------AG<-----         <---------DOF5.7(2)    --------->MYB59 --------->MYB52(1) --------->ICU4         <----------     <---------TOE1(2)  <---------MYB52(1)    ------------>CBF     <---------YAB1  <------MYB83------  --------->O2         <-------GAMYB    ------>MYB83             <---------ICU4    <------MYB46(1)  <---------O2        ----------->GT1 <---------MYB59 <---------DEAR3(1)   <-----------------AGL1   < ------>ZmHOX2a(1)  <---------At5g28300 ------>MYB46(1) <------NtERF2      ----------------->AGL2   < -------------------->WRI1--------->AHL20(2)  --------->MYB46(3)<---------ATHB12  --------->MYB59---- <<<TBF1 --------->MYB52(1)<---------YAB1  <-----------GT1<-----------HVH21==========================   ttcctcgtgggtaacgacgatataccgttaaaattaggaaccaaattacccaatggtcgtcgtcaaatcatttttaatcccaatttggtatttttccacg  6369200                                                                                            <--------                                                                                         <---------MYB52(1)                                                                                        <-----------TGA1                                                                                        <-----------HVH21                                                                                       --------->ANAC46                                                                                       --------->DREB2C(2)                                                                                       --------->DEAR3(1)                                                                                      <------NtERF2                                                                                     ------>NtERF2                                                                                    <---------ALFIN1                                                                                    --------->DEAR3(1)                                                                                   --------->ERF1                                                                                   --------->ATERF1(1)                                                                                   --------->MYB46(3)                                                                                   <---------ABI4(2)                                                                                   <------NtERF2                                                                                  <---------ATERF1(1)                                                                                  --------->ABI4(1)                                                                                  ------>NtERF2                                                                                 --------->ATERF1(2)                                                                                 --------->RAP2.3(3)                                                                                 --------->ANAC58                                                                                 --------->DEAR3(1)                                                                                 --------->RRTF1(2)                                                                                 --------->RAP2.6(2)                                                                                 --------->ANAC46                                                                                 --------->RAP2.3(2)                                                                                 --------->DREB2C(2)                                                                                 --------->ANAC58                                                                                 --------->RRTF1(3)                                                                                 <---------ATERF1(2)                                                                                --------->RAP2.3(1)                                                                                --------->DEAR4(2) --------->WRKY18(1)                                                            --------->RAP2.6(1) -->MYC2                                                                        --------->RRTF1(1) ---PIF5                                                                        <------NtERF2 ---MYC3                                                                        --------->ATERF1(1) ---MYC4                                                                        --------->ERF1 -->MYC4                                                                        --------->ORA47(2) -->PIF5                                                                       --------->DREB2C(1) -->MYC3                                                                       <---------DREB2C(1) ---MYC2                                                                       <---------ATERF1(1) --->ANAC46                                                                    <---------RAP2.3(1) ----PIF3(3)                                                                   <---------DEAR4(2) ====================================bZIP_DOF                                  --------->At4g35610 --->PIF3(3)                                                                   ------>NtERF2<-------- --->O2                                                                       --------->DEAR3(1) -------PIF3(2)                                                               <---------ATERF1(2) ----O2                                                                       --------->ANAC46 ----TGA1a                ---------->DOF2    <---------ANAC46                 --------->RAP2.6(2) -GT1                  <---------------AGL15<-----------------------TaNAC69(2)<---------DEAR3(1) --->TGA1a  ------------>CBF              ----------->HVH21                  --------->ERF1 --------- ---------PCF2       <-----------GT1      ----------->TGA1                   --------->ATERF1(1) -----------HVH21<---------AHL20(2)   <---------ZAT14                        --------->MYB46(3) ----->ALFIN1    --------->AHL20(2)   --------->ZAT14    --------->ZAT6     <---------At4g35610 ======================================MADS_MADS  ----------->ARR10         --------->At4g35610   tgggtcaaacaaaaaacaattttttacataaagagaagagagtagtgacgagaagattagcactactgaatcaaacttagccgccgccaccgtcacgttg  6369300                                                                                            ---------                                                                                            <--------                                                                                         --------->ANAC46                                                                                         --------->AtMYB61                                          <------NtERF2                                  <---------ALFIN1                                        <---------ANAC46                                --------->MYB46(3)      <---------At4g35610               <---------ANAC58                              --------->YAB1 --------->TOE2(3)                      <---------ANAC58                             --------->MYB46(3) --------->TOE1(3)                      <---------RAP2.6(2)                        --------->YAB1 -O2  <---------CCA1(2)          ------------>CBF           --------->TOE1(3)      --------->WOX13(1) -ANAC46                        ------>ZmHOX2a(1)           --------->TOE2(3)     --------->MYB46(3) >O2--------->REM1(1)     --------->AtMYB61              --------->GLK1(1)     --------->MYB46(3) <--   aaaccttcatctctctatctctctgagacctctccttcaatggcgtcttcgcttctgagaaaccctaatctctactcatcaacaacaatcaccaccactt  6369400                                                         ------->GAMYB                                                         --------->AtMYB61                                                        <---------ATHB12                                                        --------->MYB46(3)                                                       ------>MYB83                                                       ------>MYB46(1)                                ------>MYB46(1)<---------ANAC58                                ------>MYB83   <---------ANAC58  <---------ALFIN1       <---------ALFIN1        <---------CCA1(2) <---------MYB52(1) >AtMYB61                  <---------ALFIN1<----------DOF2       --------->DEAR3(1) -ALFIN1  <---------DAG2 <---------ALFIN1------>ZmHOX2a(1)      --------->MYB46(3) --------DOF2    ------>ZmHOX2a(1)    ------>ZmHOX2a(1)-------->P--------->AtMYB61  --------->LBD16 <   cttttcttcccaccttctcctctaaacccacacctatctcctcctctttccgtttccaaccatctcaccaccgttcaatctccctccgaagtcaaaccct  6369500                                     --------->ANAC46                               --------->ARR14(2)                                   <---------ALFIN1   --------->ATERF1(1)           <---------ARR14(2)                                   --------->AtMYB61 --------->ABI4(1)             <---------GLK1(1)                        ------>ZmHOX2a(1)            ------>NtERF2                 --------->GLK1(1)                      --------->HSFC1(2)             <-----------HVH21         ------->GAMYB                      <---------HSFC1(2)             <---------ATERF1(1)       --------->RAP2.6(2)                      ------>ZmHOX2a(2)              <---------SPL7           --------->MYB46(3)                      =================================HOX2a_HOX2a           -------->P   <------ZmHOX2a(2)                     <------ZmHOX2a(2)           --------->ANAC46            ------>MYB83<---------ARR14(2)                     ==================================HOX2a_HOX2a           ------>MYB46(1)                    <---------ARR11(3)          ------>ZmHOX2a(1)           <---------ALFIN1                    <---------GLK1(2)--------->bZIP60(2)                    --------->MYB52(1)                    --------->ARR11(3)      --------->ANAC46   ==================================HOX2a_HOX2a                    --------->ARR14(2)    <---------ALFIN1     ------>ZmHOX2a(1)  <----------DOF2                    --------->AGP1--------->MYB46(3)--------->DEAR3(1)     --------->MYB46(3)                    <---------ARR14(2)    --------->ZAT6  --------->ANAC46 <---------ALFIN1         < ---------CCA1(2)  <---------At4g35610--------->AtMYB61  <------NtERF2   --------->ANAC46--------->ARR14(2)   ccgtctctcatgctcaatctcagatccttctccactaccacctcacactcctcgccgtccccgtcctgaatacatccccaaccgcatttccgatccaaac  6369600                                                                                             --------                                                                                             <-------                               --------->At5g28300  <---------ALFIN1                     --------->ZAT2                             <---------ANAC46       --------->REM1(1)                    <---------ZAT2                             <---------DEAR3(1) --------->At4g35610                      <---------At4g35610                          ----------->TGA1    <------ZmHOX2a(1)                          --------->At4g35610                          ----------->HVH21 --------->LBD16                          <-----------HVH21    <------NtERF2        <-----------HVH21 <---------HSFB2a(2)               --------->bZIP60(1)    --------->LBD16      --------->LBD16   --------->HSFB2a(2)  --------->ANAC58    --------->TGA1a  <---------DEAR3(1)    --------->ANAC46   <---------LBD16      --------->ANAC58    --------->ANAC58 ---------SPL7    --------->ZAT14          <-----------RAV1(2)  --------->ANAC46    --------->ANAC58   tacgtccgcgtcttcgatactactctccgtgacggtgaacaatctccaggagctacacttacttccaaggaaaaacttgacatcgctcgtcagctagcta  6369700                                <---------At4g35610                                <---------ZAT2                               ------>ZmHOX2a(1)                               <-----------RAV1(1)                             <---------ANAC58                          --------->GLK1(1)                          <---------GLK1(1) --------->YAB1             <---------At4g35610                    <---------ZAT2 --------->At4g35610    ----------->GT1          --------->bZIP60(1)----------->RAV1(2)--------->ARR11(3)     --------->At4g35610 ->At4g35610        --------->ZAT2 <---------At4g35610    <---------MYB46(3) --STY1(2)<---------bZIP60(1)<---------ANAC58 <---------YAB1    --------->ZAT6   aacttggtgttgacatcatcgaggctgggtttcctgctgcttccaaggatgattttgaagcggttaagactatagctgaaacagttggaaacactgttga  6369800  Previous    Next  AGI:  At1g18490.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39890.1); similar to Putative Expressed protein [Brassica oleracea] (GB:AAW81740.1); contains InterPro domain Protein of unknown function DUF1637 (InterPro:IPR012864) Range:  from: 6366513    to: 6368842    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g18500.1    Description:  IPMS1/MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase. Identical to 2-isopropylmalate synthase 1, chloroplast precursor (IPMS1) [Arabidopsis Thaliana] (GB:Q9LPR4); similar to IMS1, 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT1G74040.1); similar to 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A) (Alpha-IPM synthetase A) (GB:O04973); similar to 2-isopropylmalate synthase 1 [Brassica insularis] (GB:ABA26446.1); similar to Putative 2-isopropylmalate synthase [Brassica oleracea] (GB:AAW81741.1); contains InterPro domain 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; (Int Range:  from: 6369340    to: 6373018    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version