Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <----------ID1                                                                 ---------->DOF2                  ---                                     <----------DOF2         <------NtERF2               --------->ARR14(2)                          --------->DAG2                 --------->ALFIN1                <---------ARR14(2)                         ---------->DOF2 <---------At4g35610----------->GT1   ------>ZmHOX2a(1)   <--            <----------DOF2       --------->GLK1(2)     ------->GAMYB     <---------ARR11(3) --------   aacaaaaactgatactttgcctaaacaaaaagagacaatctttagcttcgaaattcaacggggggcaaaaagacaaggtcctcaaattcaaaatccccaa  6359800                            --------->ANAC46                          <---------ALFIN1                          --------->AtMYB61                       --------->ANAC46                                --------->GLK1(2)                 <---------GLK1(2)                                ---------->DOF2                -------->HAHB4                                 --------->ANAC58 <---------YAB1<---------ATHB12                                --------->ANAC58--------->YAB1 ------>ICU4   <---------YAB1                                --------->At4g35610 -------ATHB51 --------->ICU4        ----------->GT1       --------->YAB1     <---------ATHB12 ->LBD16 --------->LBD16------>ZmHOX2a(1)        ------------------------>ANAC81 --------->AtLEC2  --   attatgaaatcagggaaatgattctcctccacaccaaaaacgaaaatcgaaattgaacaaatcagaagcaaagaatttgaatcatgcagtcaatttcaga  6359900                               ------->GAMYB                              <---------MYB55(2)                              ----------->GT1                              --------->MYB46(3)        ------>ZmHOX2a(2)     <---------ANAC58                            --------->MYB52(1)      ----------->HVH21         <---------ANAC58                   ---------->DOF2             <---------DEAR3(1)        --------->YAB1          ---------->DOF2 <---------MYB52(2) --------->CCA1(2)          <---------ATHB12      -------         XXXXXXXXXXXXXXXXXXXXX>MIR2936  <------ZmHOX2a(1)     ---------->DOF2 <---------ANAC46<------ -------->DOF2----------->GT1-------->P =======================HOX2a_HOX2a---------->DOF2  ----------   gaaaagagaattgaaagagagaaaagagactaaccaccatgaggaagagacggtgtgatcgagtttaagcaccaataaaagcgtgaaacagaagagtaaa  6360000             <---------ANAC58       <------NtERF2      ------>NtERF2     >>>>>>>>>AtERF-1     >>>>>>>>>AtERF-3     >>>>>>>>>AtERF-7     --------->RRTF1(3)     >>>>>>>>>AtERF-2     <---------ATERF1(2)     --------->ATERF1(2)     --------->DEAR3(1)     --------->RRTF1(2)     --------->RAP2.3(3)     >>>>>>>>>AtERF-5     --------->RAP2.3(2)     --------->RAP2.6(2)     >>>>>>>>>AtERF-4    --------->ATERF1(1)    --------->DEAR3(2)    --------->RRTF1(1)    --------->ERF1    --------->RAP2.3(1)   <---------ATERF1(1)   <---------At4g35610               ------>ZmHOX2a(1)   --------->At4g35610      <---------At4g35610                                           <---------HSFB2a(2) -->ZAT18    <---------ANAC58      ----------->RAV1(2)                                    --------->HSFB2a(2) ---ZAT14    <---------ANAC46<---------ALFIN1                                        --------->At4g35610 ->GT1<---------RAP2.6(3)   --------->At4g35610          --------->YAB1              <---------At4g35610   ctatgagccgccaaggcttgtatcgacttcagcactctcctgcaactcatctatctctcttataacgaagaaatttgtcaacttgttagcttcgagacca  6360100                                                                                       --------->ANAC55(2)                                                                                       --------->ANAC58                                                                                       <---------ANAC55(2)                   --------->DAG2                                                      --------->ANAC58          --------->ARR11(3) --------->ANAC46                   ----------->RAV1(2)  *TSS          <---------ARR11(3) --------->ANAC58                ------->TEIL           <---------MYB52(1)         --------->RVE1(1)   --------->ANAC58             <---------WOX13(1)       <-----------HVH21         --------->CCA1(1) ---------->DOF2             <---------YAB1             ------>ZmHOX2a(1)    --------->YAB1---------->DOF2         <XXXXXXXXXXXXXXXXXXXXMIR397A        ------>ZmHOX2a(1)   tctctatgaaaatatctctataaagtcgaaaacgcaattgctacaatgttgtatttgatgatggacccctgcttcttctccttcctgttacgcctcgttt  6360200            <---------AHL20(2)           <---------YAB1         <XXXXXXXXXXXXXXXXXXXXXMIR173      <---------ICU4      --------->ATHB12     --------->ICU4             --------->YAB1     <---------ATHB12     --------->ANAC58       <----------DOF2     <---------YAB1       --------->ANAC58   <-----------GT1    <---------TOE2(3)   ---------->DOF2   --------->AHL20(2)             <-----------GT1   --------->YAB1   --------->ANAC58      <---------AHL20(2)            <---------AHL20(2)  <---------AHL20(2)--------->ANAC58     --------->AHL20(2)     ---------->ID1                    <-- <---------AHL20(2) --------->ANAC46<---------ARR11(3)     <----------DOF2            <---------AHL20(2)   ttttttaatgatttttatttgcaagcaaaagcaaacaaaatcatttatttcctttggattccttttgtttttttttaatctctctgaattttttgtttag  6360300                                                               <---------AHL20(2)                                                              <---------AHL20(2)                                                              --------->AHL20(2)                                                           --------->YAB1                                                           -------->HAHB4                                                           --------->ATHB51                                                           -------->ATHB1                                                           <---------AHL20(2)                                                           <--------HAHB4                                                           <---------ICU4               ---------->DOF2                                                          <---------ATHB51       <---------ANAC46                                                          <---------ATHB12       <---------ANAC58                                                          --------->ICU4         <---------ANAC55(2)                      --------->ANAC58              <---------DOF5.7(2)          ----------->GT1                      --------->ANAC46            --------->DOF5.7(2)            --------->ANAC55(2)                      --------->ANAC58            <---------MYB52(1)             <---------ANAC58        --------->ANAC58                         --------->TOE2(3)          <---------ICU4          <        --------->ANAC58                         --------->TOE1(3)    <----------DOF2  <---------AHL20(2)        --------->ANAC46                     <----------DOF2 <---------YAB1 --------->ATHB51        - --------DOF2 --------->MYB52(1)        <-----------HVH21 <---------YAB1 --------->YAB1--------->AHL20(2)   ctttgtttgcacgccataactgaaacgcaaacgcgttctcaatgtcactttcgttaactaattattaattcgctttcataatttcgtaattaaagaattg  6360400                                                      <---------TOE2(3)                                                      <---------TOE1(3)                                                      --------------->AtSPL3                          --------->TOE2(3)       <----------DOF2                          --------->TOE1(3)    ------->GAMYB                      ---------->DOF2         <------------MYB.PH3(1)                    --------->ANAC58        --------->ARR14(2)              <---------TOE1(3)             <---------ARR14(2)              <---------TOE2(3)          <------MYB83<---------DOF5.7(2) ---------ALFIN1<------ZmHOX2a(1)        <------MYB46(1)                   <----------DOF2   <------- -------->AtMYB61   --------->ANAC58    --------->MYB59   ------->TEIL<----------DOF2        --------   gaccactcggataattaaggaaacgaaagcttaatgtcatgttcggtaaccgcattaacgtacttaatggttcttttctttttaaacagtagaagaatct  6360500       <----------DOF2                                                               <---------At5g28300 <---------DAG2              ---------->DOF2                                        <-----------GT1 <----------DOF2          <------ZmHOX2a(1)        --------->AHL20(2)            <---------ZAT6 ----ARR10      --------->DAG2            --------->ZAT6  <----------DOF2   --------->MYB52(1) ->GLK1(2)     ---------->DOF2--------->DAG2       <---------AHL20(2)       <-----------GT1   aaactttttctttataaaaaagttcaaaggataaagttttgtttccactatatttaaatgcttttgaattttttcaaataacagtgttactgtttttcaa  6360600                                                                  --------------->AGL15                                                                  <---------------AGL15                                                                 <-----------------AGL1                              --------->At4g35610              <-----------GT1      <---------YAB1                              <---------At4g35610             --------->AHL20(2)   <---------ARR11(3)                       --------->AHL20(1)                 <---------AHL20(1)       --------->ARR11(3)                       --------->AHL20(2)                 --------->AHL20(2)      --------->CCA1(1)                       <---------AHL20(2)                 <---------AHL20(2)      --------->RVE1(1)                      <---------AHL20(2)                 --------->AHL20(2)   --------->AHL20(2)-----                      --------->AHL20(2)        <---------GLK1(1)<-----------------AGL3        <-----                  <---------AHL20(2)           --------->ARR11(3)<-----------------AG        --------        ---------->DOF2<---------AHL20(1)      <---------ARR11(3)<-----------------AGL2<---------YAB1   aaaaaaaaaaaaaagagtattgaattaaatttagctgaaacttatattagatatcgctattaaatttactacatttgggataaaatatcattttagtata  6360700  Previous    Next  AGI:  At1g18470.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73950.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68014.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6356124    to: 6360185    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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