Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------AHL20(2)                                                    <---------AHL20(1)                                                    --------->AHL20(1)                                                    --------->AHL20(2)               <---------AHL20(2)   --------->YAB1                                   --------->ARR11(3)               --------->AHL20(2)  <---------YAB1                                    <---------ARR11(3)        --------->ANAC58 ---------ICU4                                 --------->AHL20(2)             --------->ANAC46 -------->YAB1                               ----------->GT1                  --------->ANAC58     -- ------->ICU4                      --------->MYB46(3)                       --------->ZAT6         -- -->ANAC55(2)             <---------ALFIN1 ---------->DOF2        <--------P<---------ALFIN1       <- -->ANAC46         ---------->DOF2--------->ANAC46 --------->AHL20(2)   <---------MYB52(2)        --- ---GT1      <---------ATHB12     ----------------->AGL1<---------YAB1----------->RAV1(1)         ---   aatcatcataaacaaatgaagaaaagtcccacttctacccaatgggaaagaaaatatattgatagcaggtagccacaaacactccaaaaaattgaacaaa  6342900                          --------->ARR14(1) --------->TOE2(3)        --------->CCA1(2) --------->YAB1          <---------ARR14(2) <---------DAG2                                   <------- ------->AHL20(1)        --------->ARR14(2) <----------DOF2                         --------->ICU4 ------->ARR11(3)        --------->ARR11(1)--------------->AGL15        <-----------GT1     --------- --------ARR11(3)  --------->ICU4 <---------TOE2(3)           <---------ALFIN1    <---------ICU4 ------>RVE1(1)    <---------ATHB51        <---------------AGL15      --------->AHL20(2)<---------WRKY18(1) ------>CCA1(1) ----------------->AGL1    ----------------->AGL1    --------->TOE2(3)<---------ICU4   atatcttaataaacttctgccataatggatacgcttaatgtaatccctttttcagaaaaaaacaacacttcattaaacacttcataattttgaccggtat  6343000                                --------->ICU4                         <------------CBF                       <---------YAB1                       --------->AHL20(2)                       <---------AHL20(2)                       --------->AHL20(1)                                         <---------ANAC46                  --------->AHL20(2)                                       <----------DOF2                  --------->AHL20(1)                                     --------->ZAT18       ------                  <---------AHL20(1)                                   <-------MYC2           <------                  <---------AHL20(2)                                   ------->MYC2         ---------                 --------->AHL20(2)                             --------->ANAC58  <---------ANAC58                 <---------AHL20(2)                 ----------->GT1    ------->MYC3       -----------          <---------TOE2(3)     --------->GLK1(2)--------->GLK1(2)     <-------MYC3  <-------TEIL --MYB52(1) --------->YAB1   <---------TOE2(3)------------>CBF  --------->ANAC58  <---------ANAC58 -->GT1<---------YAB1 --------->AHL20(2)----------->GT1         --------->ANAC46 <-------------------   ttttggtttattaatgaaaataaattttattgagattatgggttgaaaaacaatctgtaattagacacgaaaacgtgctctaagacgtgcatagcaatca  6343100                                                     --------->GLK1(2)                                                     <---------ARR14(2)                                                     --------->ARR14(2)                                                    <---------GLK1(1)                                             --------->ARR14(2)                                          --------------->AGL15        <---------ANAC58                  ----------------->AGL1    --------->CCA1(2)                     <---------------AGL15    --------->GLK1(1)                    <-----------------AG   <---------ARR14(2)                    ----------------->AGL1                      <---------ICU4   <---------GLK1(2)                     <-----------------AGL1                      --------->YAB1   --------->ARR14(2)                    ----------------->AG                <-------TEIL --->YAB1                                <-----------------AGL2           --------->ATHB12 ---ATHB12                               ----------------->AGL2          <---------YAB1   --------->bZIP60(1) >WOX13(1)         <----------DOF2       <-----------------AGL3          --------->ICU4   <---------bZIP60(1) ->CBF  <---------ANAC58                 ----------------->AGL3     <---------At4g35610----------->HVH21 ----TaNAC69(2)    --------------------->WRI1<---------ARR14(2) <-----------GT1   --------->WOX13(1)   taccagatttgcataccatttctttgcaaaattcgaaaacagttccaaatttgggaatctgggttttttcagttcatgattcatcagtcatgacaccatc  6343200                                                                                                  ---                                             <-----------ARR10                                    ---                                       --------->YAB1                                            <---                                   --------->AHL20(2)                                            ----                                  --------->AHL20(2)  --------->LBD16                          ------                         ---------->DOF2     --------->GLK1(2) <---------ANAC58              --------              --------->YAB1--------->ZAT18 <---------GLK1(2)  <---------ANAC58      --------->WOX13(1)             <---------ATHB12 ------------>CBF       --------->LBD16     <-----------GT1  --------->At4g35610  <----------DOF2    --------->TOE2(3)<---------AHL20(2)   <----------DOF2         ------------>CBF -   gtgtctttgatagaaatcataaaccacaaatgcacaataaataatagaatctctcccgagtctttccgtctctgtttacacctctatcaatcttctgcaa  6343300                                 <---------ZAT2                                 --------->ZAT2                              ---------->DOF2                             --------->AtMYB61                            <------NtERF2                            --------->ANAC58                            --------->ANAC58                           ----------->RAV1(1)                           ------>NtERF2                           ==============================RAV                         <------NtERF2                         --------->ATERF1(1)                        <<<<<<<<<AtERF-3                        <<<<<<<<<AtERF-4                        <---------ATERF1(1)                        <---------RAP2.3(1)                        <---------RRTF1(1)                        <---------ORA47(2)                        ------>NtERF2                        <---------ERF1  --------->HSFB2a(1)                <-----------RAV1(2)                       <---------DEAR3(1)             <--------P         <-----------HVH21                       <---------RAP2.3(3)         <------NtERF2        <----------DOF2                       <---------RAP2.3(2)        --------->LBD16      ------>ZmHOX2a(2)                       <---------RRTF1(3)        <---------ANAC46     <------ZmHOX2a(2) ------>ATHB12         <---------ATERF1(2)       --------->ALFIN1    <---------ARR11(3)             < ------>YAB1           --------->ATERF1(2)       <---------DEAR3(1)  <---------ARR14(2)          ---- ------ATHB12          --------->bZIP60(1)   <-----------RAV1(2)     ------->TEIL                ---- ----->ICU4            <---------RAP2.6(2) <-----------HVH21         --------->ARR11(3)          <--- --->WOX13(1)    <---------ARR14(2)     <---------HSFB2a(1)          --------->ARR14(2)          <--- ---->CBF        --------->ARR14(2)   <---------GLK1(2)          <---------LBD16                 <--- -------->At4g35610   --------->RAP2.6(3) <----------DOF2      ----------->HVH21                <----   tcatcggaatcaagaaccagaaatggcggcaccaaagctggaatctttcaggcggggtagcatgttcgacggatctttcaggcgaggtagtatgttcgat  6343400                                                                                           <---------At4g35610                                                                                        <---------At4g35610                                                                                      <---------MYB52(1)                                                                                     <-------GAMYB          ---------->DOF2                                                            <---------At4g35610 --------->MYB52(2)                                                                 --------->MYB52(2) -------TEIL                                                                        <---------MYB46(3) ----->HSFC1(2)                                                                    --------->SPL7 ----->HSFB2a(1)                                                                  <---------MYB52(1) ------HSFB2a(1)                                               ------->GAMYB     <-----------HVH21 ------HSFC1(2)                   ------>ZmHOX2a(1)           --------->MYB46(3) <---------SPL7 ------MYB46(3)        --------->CCA1(2)<---------ZAT14    <---------WRKY12     <---------ANAC58 -----TOE1(2)        --------->CCA1(2)  --------->ZAT14  <-----------HVH21      <---------ANAC58-----   ggttcgtttcgacaaagcatgagagataggcttatcctacagagcagaggctattccaatgtcaacgacgatgacaaaacttccgtccgttgctgctcct  6343500                                                  --------->AtMYB61                                               <-----------GT1                                      <---------HSFB2a(1)                                      <---------HSFC1(2)                                      --------->HSFB2a(1)                                      --------->HSFC1(2)                                    <---------GLK1(2)                                    --------->ARR14(2)                                    <---------ARR14(2)                                  --------->LBD16 <---------MYB59                                 --------->HSFC1(1)     <----------DOF2                                 <---------HSFC1(1)    --------->TOE2(3)                                 <---------HSFB2a(2)------>MYB46(1)              <---------YAB1                                 --------->HSFB2a(2)------>MYB83          --------->TOE2(3)     <-----------GT1         <----------DOF2   <---------WRKY18(1)        --------->YAB1 ->ZmHOX2a(1)             ------>ZmHOX2a(1)   --------->WRKY38(1)     <---------AHL20(2)   acaggttatacattacatacaatctctccttctttccagaaccttctattgaccaaacctttttgaagccattttatcttaatatgatgcctcttggagt  6343600                                                                                <-------GAMYB                                                                        <------ZmHOX2a(2)                                                                        =============================                                                          --------->REM1(1)    <---------MYB46(3)            --------->TOE2(3)                         --------->At4g35610  <---------O2      --------->ANAC55(2)                             <---------At4g35610 <---------LBD16       <----      <---------ANAC55(2)                             <---------ZAT2   --------->ARR11(3)     -------      --------->ANAC58                          <---------ANAC46       <---------ARR11(3)    --------      --------->ANAC58                          <---------ANAC58       <-----------HVH21     <-------  <-----------HVH21----------->GT1              <---------ANAC58----------->HVH21--------->ALFIN1 <--   ccaatgtcaagtaatctcaaatggttaagtcttgaaatgctattggtgttgtttgcagctacttctctgacaagatcacgggggttgtgaagaaattaaa  6343700                                          <------ZmHOX2a(1)           <---------ANAC55(2)         --------->LBD16           --------->ANAC55(2)   ----------->HVH21           --------->ANAC58      --------->WRKY38(1)      <---------MYB46(3)         --------->WRKY12 ====HOX2a_HOX2a               --------->ZAT2    <---------ARR11(3)                            ====== -----TOE2(3)                  <---------At4g35610        <------NtERF2                        ====== --->DOF2 --------->RAP2.6(3)  <---------ZAT2<---------At4g35610                           --------->ARR14(2) ->AHL20(2)<---------RAP2.6(2) ----------->RAV1(2)      <---------DEAR3(1)             --------->TOE2(3) --AHL20(2)--------->ANAC58    --------->At4g35610     <---------LBD16               -------->P------ ----ZmHOX2a(1)              --------->MYB46(3)  --------->ARR11(3)          ----------->HVH21-------   ggatgttttggttacggcatgggagatgggaacagctgacccgaggaagatgatattctcggcgaagatgggtttggctctgacacttacctctatcctc  6343800  Previous    Next  AGI:  At1g18415.1    Description:  other RNA Range:  from: 6343089    to: 6345655    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g18420.1    Description:  similar to ATALMT9 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 9), anion channel/ [Arabidopsis thaliana] (TAIR:AT3G18440.1); similar to Putative expressed protein [Brassica oleracea] (GB:AAW81734.1); contains InterPro domain Protein of unknown function UPF0005 (InterPro:IPR006214) Range:  from: 6343323    to: 6345682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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