Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    ---------->DOF2               --------->LBD16              --------->HSFB2a(2)              --------->LBD16              <---------HSFB2a(2)             <---------HSFB2a(2)        --------->ANAC58                                         <---             <---------LBD16          ---------->DOF2                                          <-----             --------->HSFB2a(2) --------->SPL7                                                <-----             <---------ANAC46  <---------SPL7                                                  <-----            <---------LBD16   <---------ANAC58                                                <------   <---------ARR14(2)         <---------HSFB2a(1)                                   ------>ZmHOX2a(2)   --------->ARR14(2)         <---------ANAC58                                     --------->GLK1(1)  <------ZmHOX2a(1)     ---------->DOF2 --------->ANAC58      <----------DOF2      <---------GLK1(1) >GT1     <---------ARR14(2)  --------->HSFB2a(1)     --------->ARR14(2) <---------TOE2(3) <---------   cagaggatttagtttccgggaaaagaaaaagagcgttcgatgaagccatggctctggtttcgctctttgatttttgatgtttctgatctctgtctttggt  6304000                                                                                           ----------                                                                                          --------->ANAC58     ---------->DOF2                                                                      --------->ANAC58 ------MYB46(3)                                                                          --------->DAG2 ----ANAC58                                           <-----------TBP                   ---------->DOF2 ----ANAC58                   <---------ANAC46    --------->AtLEC2                      ============= --GAMYB                --------->ARR14(2)        --------->ANAC58                <----------DOF2  -- ---MYB46(3)            <---------ARR14(2)        --------->ANAC58                =================== -DOF2             ----------->RAV1(1)         <------NtERF2 <------ZmHOX2a(1) <-----------GT1   ----   tgttttgaaaagagattagagcagcatatatggagggggaatttgaagcggcatgcatatgtaggaactaggtagacgttttttctttcgaaaagcaata  6304100    --------->ALFIN1   ------->MYC2   <-------PIF5   <-------MYC3   <-------MYC2   ------->MYC3   ------->PIF5   <-------MYC4   ------->MYC4  <---------TGA1a  <---------O2    <---------ARR11(3)  --------->TGA1a --------->ARR11(3)  <<<<<<<<<<HY5   <---------ARR14(2)  >>>>>>>>>>HY5   --------->ARR14(2)  <---------PIF3(3)             <------------CBF  --------->PIF3(3)            ------>MYB83  --------->O2   --------->GLK1(1)  --------->bZIP60(2)          ------>MYB46(1)  <---------bZIP60(2) ------>ZmHOX2a(1) -->CBF   --------->ARR11(3) <---------MYB59 <------------CBF ===========bZIP_DOF --------->TOE2(3)     --------->AHL20(1)        <---------ZAT14                - -------------->PIF3(2)      --------->TOE2(3)                       --------->ZAT18             ---- ===========bZIP_DOF --------->TOE1(3)     --------->ARR11(3)     <---------ANAC46               <--- ----->ANAC46    <---------GLK1(1)     <-------TEIL --------->TOE2(3)--------->ZAT14       --------->MYB52(1)   tgccacgtggcacatcttgatatcctcaaaacctaattggatacatatattggaccttagtaaggctcgagtgtacaggcccaaaatgtagactaatggg  6304200             --------->At4g35610             <---------ZAT2             <---------At4g35610         <---------At4g35610         --------->At4g35610                                        --------->ANAC58        ------>ZmHOX2a(2)         <---------STY1(2)                                 <-----------GT1          --------->ANAC58         --------->STY1(2)                                <---------AHL20(2)        --------->ANAC46        --------->MYB111(1)                              --------->AHL20(2)   --------->MYB46(3) ----       <--------P                         <----------TaMYB80        --------->ANAC58--------->ANAC58    --------->ALFIN1                 <---------LBD16  <---------AHL20(2)      <---------MYB52(2) ---- --------->DAG2                     <---------LBD16  <---------AHL20(2)      --------->SPL7<---------At4g35610 --------->DOF2<---------REM1(1)<<<<<<<ZML2          --------->AHL20(2) --------->ANAC58  <---------ARR11(3) ------------->AGL1             --------->ARR14(2)  <---------WOX13(1)  --------->ANAC58  <---------AGP1 --------------AGL1             <---------GLK1(2)<---------YAB1----------->HVH21  <---------ALFIN1   cctaaagtggtagctagctgtagcttaaaccctagaacctcgggataaaccctgattaattttatctcacaggcacgcgaacgaacacgcttgatctgat  6304300                                                                                                   --                                                                                                  ---                                                     *TSS                                         ---                                                  ------>ZmHOX2a(1)                              <---                                                ------>ZmHOX2a(2)                                <---                                              --------->ARR14(2)                                 <---             <----------DOF2                  <---------ARR14(2)                                 ---- --------->SPL7   <---------TOE1(3)         <---------DEAR3(2)                         --------->At4g35610 ------------>CBF<-----------GT1           --------->ETT(1)                            <---------At4g35610 ----------->AtSPL8            <------------CBF<------ZmHOX2a(2)                    <---------At4g35610 ----------->AtSPL3  <----------DOF2     <-----------HVH21    --------->TOE2(3)    --------->ALFIN1--   tcgtacaatccccttcttttaagcttttgatgacattgtcccttgtcggatcctactctcttaacctttgaaatggctgattcgagtgctgctgaaacaa  6304400                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                                --------->CCA1(2)                                                                     ------->GAMYB   --------->At4g35610                                                                    <---------MYB55(2)                             <---------At4g35610                    <---------ATHB12 <---------ZAT2                          <---------At4g35610                       --------->MYB46(3)                       <------NtERF2                               -------->P  --------->ARR14(2)                      ------>NtERF2                        --------->LBD16     <---------ARR14(2)                    ------>NtERF2                        <---------LBD16       --------->ARR11(3)     --------->ABI4(2)<---------ATERF1(1)                ==========================HOX2a_HOX2a   <---------MYB52(1)<---------DEAR3(1)                  ------>ZmHOX2a(2)    <---------GLK1(1) ------->MYB52(1)   --------->LBD16                     ===========================HOX2a_HOX2a ---->GAMYB         <---------LBD16                     <------ZmHOX2a(2)     --------->GLK1(1) ------>MYB55(1)   <---------ATERF1(1)                 <---------ARR14(2)    ----------->ARR10 ------MYB111(2)   --------->ANAC46             <-------TEIL --------->SPL7 <------ZmHOX2a(1) ------MYB55(2)    --------->DEAR3(1)         --------->ARR14(2)   ------>MYB46(1)   --------->ZAT2 ------MYB52(2)    <---------ALFIN1           <---------ARR14(2)   ------>MYB83<---------ARR11(3) ----->MYB46(3)   <---------LBD16        -------->P    --------->ARR14(2)<---------HSFB2a(2) ------>P        <---------ALFIN1    --------->ZAT6 --------->MYB46(3)   --------->HSFB2a(2)   caaccggtgcttcttctccccccgcggcttctgatgagaactctaccagattcaaccgatccggatgccaaccatcgaggagatccgagctcaagaggtt  6304500                     --------->At5g28300               <---------ANAC58                         ------>ZmHOX2a(1)               <---------ANAC58                     <---------ARR11(3)             <---------MYB52(1)                     --------->ARR14(2)            <---------SPL7                          --------->ARR11(3)           --------->DEAR3(1)                       <-----------GT1          <------NtERF2                             <---------ARR14(2)         <---------RAP2.3(1)                --------->At4g35610 --------->HSFB2a(2)              <---         ------>NtERF2        <---------ZAT14      --------->GLK1(1)                             ----       --------->ZAT18        <---------ZAT18      --------->RVE1(1)                        <--------      ------->GAMYB <----------DOF2         <---------At4g35610 <---------HSFB2a(2)         <--------    ----------->RAV1(2)       --------->ZAT14      --------->CCA1(1)                       <---------ANAC58  --------->MYB46(3)----------->GT1     <-----------HVH21   <----------DOF2                <---------ANAC58   tggaacaactgcgccgttcgtgctgtaactagtggagtcatgggtcagttcaaatatcctctctttctcgatctatattgctccattgctcttgcttttc  6304600                             <------MYB83                             <------MYB46(1)                           <---------WOX13(1)                         --------->ATHB12                                               <---------ZAT2    <---------------------WRI1                        ----------->GT1                   <---------At4g35610 ------------AGL15    <----------DOF2               ---------->DOF2     ----------->GT1 --------->At4g35610 ----------->AGL15  <-------TEIL                 ----------->GT1<----------DOF2    <---------At4g35610 -DAG2      --------->ARR11(3)          ----------->GT1  --------->ATHB12    --------->CCA1(2) --DOF2 ---------->DOF2 <---------YAB1<---------ZAT14--------->DAG2     --------->YAB1  --------->ZAT2   caaaaatgctaaaagctctaggtactttgattggtttgagaatagtgaaattggtaaagtgattagctttctaatggtgatatgcttctgagctggttat  6304700                                      ----------->GT1                                      <------MYB46(1)                                      <---------ANAC46                                      --------->At4g35610                                      <------MYB83                                      <---------ANAC55(2)                                     --------->MYB59                                     --------->MYB52(2)                                     <---------AtMYB61                                    <---------MYB55(1)                          <---------YAB1                                   <---------MYB52(1)                         --------->YAB1                                 <------MYB83                              --------->YAB1                         <-----------------AG                              <--------HAHB4                         ============================================================================                       <---------ICU4--------->MYB111(2)                  <---------YAB1                       --------->YAB1--------->MYB46(2)              <---------ARR11(1)            --              <---------ZAT14    <------MYB46(1)   ----------->GT1   --------->GLK1(2)        -------              <---------ZAT18<---------ARR14(2)    <---------ANAC46  ------->TEIL      --------------              --------->ZAT18--------->ARR14(2)<---------TOE2(3)    <---------ARR14(1) <-------------     <----------DOF2   -------->HAHB4--------->MYB111(1)   --------->TOE2(3) <---------YAB1----------   tgagtcactttcagattgcacttaataatcggatttggttaggtgaattgatgatgtgaaatctcaaatcgaatctattattataaatactctaaaaggt  6304800                                                                       --------->ATHB12                                                                  <---------AHL20(2)                                                              --------->GLK1(1)                         <-------GAMYB                       --------->ARR14(2)                         <---------MYB52(1)                  --------->ARR11(3) ==MADS_MADS            <---------DEAR3(2)                   <---------ARR11(3) -------->DOF2          <---------MYB46(3)                  <------ZmHOX2a(1)                       < ---->GT1              <---------DEAR3(1)------------>AtMYB77<---------ARR14(2)                     < ->AGL15    --------->AHL20(2)          ----------->HVH21 <---------TOE2(3)                       <-- --AGL15    <---------YAB1 <---------MYB46(3)<-------GAMYB<---------TOE1(3)           <---------ANAC46 >DOF2      <---------AHL20(2)  <---------ZAT6         ----------->HVH21           --------->GLK1(2)-   ataaagctactaatataaatgctcgccggttgtagagttgatatgacagttagacatgtgaaggatattcaattgatttgttcacattctgtgtgaattg  6304900  Previous    Next  AGI:  At1g18310.1    Description:  glycosyl hydrolase family 81 protein. similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT5G15870.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatula] (GB:ABB69784.1); similar to putative beta-glucan elicitor receptor [Brassica napus] (GB:AAP42646.1); contains InterPro domain Glycoside hydrolase, family 81 (InterPro:IPR005200) Range:  from: 6301193    to: 6303949    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g18320.1    Description:  mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein. similar to MEE67 (maternal effect embryo arrest 67), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT3G10110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21400.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) Range:  from: 6304353    to: 6305682    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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