Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->REM1(2)                                                                      --------->ZAT14                                                                  ------->MYC2                                                                  <-------MYC2 <--------ATHB1                                                                  ------->MYC3 --------->ATHB12                                                                  <-------MYC3<---------YAB1                                                                 <---------ANAC58                                                                 <---------ANAC58                                                                 --------->TGA1a                                                                 <---------TGA1a                                                                 --------->ANAC55(2)                                                                 <---------ANAC46<---------WOX13(1)                                                                 <---------ANAC55(2)                                                                 <---------O2 --------->ICU4                       --------->AHL20(2)                        --------->O2<---------WOX13(1)                --------->ANAC58                   <---------ATHB12   <---------ZAT14           -----                --------->ANAC58          --------->ANAC46       ==================================== ->ZmHOX2a(1) ---------->DOF2             --------->ZAT6<---------ATHB12<---------ANAC46     --------   tattttttccaatagacaaagcaaaaaaaatcaacaaaaattccacactactaatcaaatcaatttcacgtgtgtagtgaatgattgaaataaaccagta  6293500                                                                                     ------->TEIL             --------->LBD16                                                   --------->ATHB51       --------->GLK1(1)                                                       <--------ATHB1       <---------GLK1(1)                                                       <---------ICU4       <  --------->At4g35610                                                          --------->ATHB12     -  --------->ZAT2                                                              <---------ATHB51     --  <---------At4g35610                                                         --------->ICU4      <-- ----->DOF2 --------->LBD16                                         --------->AHL20(2)      <-------- ======bZIP_DOF                                                     <---------AHL20(2)   --------->LBD16 --->GT1   <---------HSFB2a(2)         <-----------GT1      <-----------GT1--------->LBD16  <------ZmHOX2a(2)   aaacagctgaattcccgagagatagaccgagtatttcgaaattactacagaacccacaaatttcacatgtttaattccgaataattgaaccccgatcaat  6293600                                                              ------->GAMYB                                                             <---------MYB52(2)                                  <----------ID1             --------->DEAR3(2)       --------->HSFB2a(2)        ----------->GT1            --------->MYB46(3)       <---------HSFC1(1)        ------------------------>ANAC81       <---------HSFB2a(2)      ---------->DOF2            ----------->RAV1(1)      ---------->DOF2       --------->HSFC1(1)--------->LBD16                   --------->MYB52(1)    --------->TOE1(3) ---------ARR11(3)     --------->LBD16                  --------->ANAC58         --------->TOE2(3) -------->ARR11(3)  <------ZmHOX2a(2)                   --------->ANAC58  <---------ANAC58 ------->YAB1      <---------ARR14(2)                   --------->ANAC46  <---------ANAC58 -------YAB1       --------->ARR14(2)               >>>>>>>>>TBF1        --------->ATHB12 -ATHB12--------->LBD16<---------LBD16       ---------->DOF2--------->At4g35610------->TEIL       ---   atgatatttccagaacatgccgatccccagaaaaaaaagaaaaaaaaaaaagaagaagaagcaacagacctcgaatgcttgaaccttaaacccagaacga  6293700                                                     ------>NtERF2                                                    --------->O2                                                    --------->bZIP60(2)                                                    --------->ANAC58                                                    --------->ANAC58                                                  <---------ALFIN1                                                  ------->GAMYB                                                 <---------MYB55(2)                                                 --------->MYB46(3)                                                -------->P                                                ------>MYB83                                                ------>MYB46(1)                                            --------->ANAC58                                            --------->ANAC58                                            --------->ANAC46                                         ------->GAMYB                                        <---------MYB52(2)                                        <---------MYB111(2)                                        --------->MYB46(3)                               --------->YAB1  ------>MYB83                             --------->GLK1(2) ------>MYB46(1)                        ---------->DOF2 <---------MYB55(2)                    --------->ZAT2    ----------->RAV1(1)        <-----------GT1                    <---------At4g35610------>MYB46(1)    <---------ATHB12                    <---------ZAT2   --------->AtMYB61 <---------ALFIN1 --------->ZAT6          <---- ------->DOF2       --------->At4g35610------>MYB83 --------->ANAC46   <------ZmHOX2a(2)       <-----   agaagcgaagaagctaattcgaagctgaaagaatcaagaccaacaaacccaaccacgccactcattttctccgatcactacaattctccgatgtaattta  6293800                                                     <---------YAB1                                                 <---------AHL20(2)     ------->GAMYB                             --------->AHL20(2)    <---------MYB52(2)                         <---------AHL20(2)  <-----------GT1<---------TOE2(3) <    --------->MYB46(3) <---------At4g35610   <---------AHL20(2)  <---------AHL20(2)                -- <---------WRKY38(1)   <---------CCA1(2)     --------->AHL20(2)  --------->AHL20(2)   <-----------GT1 -----At5g28300       ------->TEIL         <---------AHL20(2)   *TSS    <------------CBF----------->GT1 ------GT1   --------->AHL20(2)            --------->AHL20(2)<---------YAB1 <---------TOE2(3)   <----   cagtcaacaaaccaatttcatatgcatctctctgtctctctctatatatatatatatgatactataatttaacaaattgagattaatgtaacgttacatc  6293900                       <---------ARR14(2)          <---------ANAC55(2)          <---------bZIP60(2)          <---------ANAC58                                          <----------DOF2          <---------ANAC58    ------->GAMYB                         <---------DAG2          <---------O2 --------->ARR14(2)                   --------->ANAC58                 --------          <---------ANAC46 ----------->RAV1(1)              --------->ANAC58                 <------- --------P<---------ANAC55(1)--------->MYB46(3)    <---------At4g35610                       -------- ------->REM1(2)      <---------CCA1(2)   <----------DOF2 ---------->DOF2               --------->YAB1 -----ANAC46       <-------TEIL   <----------DOF2  --------->At4g35610          ---------->DOF2   gtgtaggctcttacgtggaagtccatatccaacagccttttagcctttaacttatctgccaaaagcaaaacttttttgatcaaaaagaaatagtaatcgt  6294000                                                                                           <---------ICU4                                                                                <---------------AtSPL8                                                                                <---------TOE2(3)                                                                                --------------->AtSPL3                                                                                --------------->AtSPL8                                                                                <---------TOE1(3)                                                                          <---------------AGL15                                               <---------ANAC55(2)        --------------->AGL15                                               <------MYB46(1)           ----------------->AGL3                                               <------MYB83              <-----------------AGL3                         --------->YAB1        <---------ANAC46          ----------------->AG              --------->AHL20(2)              --------->MYB52(2)         <-----------------AGL2             <---------YAB1                   --------->MYB111(1)        <-----------------AG           <---------AHL20(2)                 --------->MYB46(2)         ----------------->AGL1          --------->AHL20(2)                  --------->MYB59            ----------------->AGL2          --------->ICU4<---------YAB1        --------->MYB111(2)        <-----------------AGL1    <- ------->AtSPL8     --------->AHL20(2)       <---------MYB55(1)     <---------YAB1         --------->YAB1 --------AtSPL8<---------AHL20(2)           <---------MYB52(1)    --------->bZIP60(1)     <---------YAB1 ------->AtSPL3--------->AHL20(2)         <---------ZAT6          <---------bZIP60(1)   <---------CCA1(2)   acattatacatatttattaaaaaaaaatgataagaagttgtattgtgttaggtgagaaaacatatatgatatcattccatttaaggtaccatatcattac  6294100                                                    <---------AHL20(2)                                                   <---------YAB1                                                 --------->YAB1                                                <---------YAB1                                                --------->ICU4          --------->AHL20(2)                                              --------->YAB1            <---------AHL20(2)           --------->MYB46(3)         <---------At4g35610 <-----------GT1     --------->LBD16 ---------DOF2               <---------YAB1------>ZmHOX2a(1)        <---------YAB1   actttctatatgaacaaacatctaaactcttaaaattggcaactcctgtaataataaatgtaacgattttctaattaatccagagcttagtcttcgtttc  6294200                                                           <---------AHL20(2)                                                           --------->AHL20(2)               <------ZmHOX2a(2)                   <---------ZAT2             <------ZmHOX2a(1)                <---------At4g35610        -------->HAHB4                        <------MYB83--------->AHL20(2)        --------->ATHB12                      --------->At4g35610                   <---------ALFIN1        --------->YAB1          ----------->GT1    --------->At4g35610              ------->GAMYB       --------->ICU4          <---------HSFB2a(2) <---------At4g35610             --------->MYB46(3)       <---------YAB1          --------->HSFB2a(2) --------->ZAT2                <-----------GT1   --     <---------ICU4         --------->ARR11(3)<------MYB46(1)                 --------->YAB1<--------     --------->YAB1<---------GLK1(2)         <---------MYB46(3)            --------->YAB1  <---------ANAC46   caatgcataatgataggatcagaaactgattatctcgaaaaatcaggctggtgagctggattaaattcaaaaaccaaaaattataaccaccttgtgtaca  6294300             <---------TOE2(2)                      --------->CCA1(2)             ------->TEIL                      ---------->DOF2             <---------TOE1(2)               <---------MYB52(2)                   <---------TOE1(3)          --------->ANAC55(1)               ------>MYB46(1)                       <---------TOE2(3)          --------->ANAC46                ------->GAMYB---------->DOF2           <-----------GT1          --------->ANAC58               <---------MYB55(2)                      <---------DOF5.7(2)          --------->ANAC58               --------->MYB46(3)                     <-----------GT1      --------->AtMYB61                  <---------MYB52(2)                 <---------CCA1(1)   <-----------GT1        *TSS          --------->ANAC46                    <---------RVE1(1)   --------->ANAC46       <-----------HVH21 ------>MYB83                   --------->ARR11(3) --------->TBP     <-----------GT1      --------->ANAC58                   <---------ARR11(3)       < -ZAT18 <---------ALFIN1 <----------DOF2--------->ANAC58             ---------->DOF2            <----   tatataaaccacacgcatgttttacaactttcacatcttcacaaccaactaaagatagaaagaacataatacaaagagatatttaacgttttgaaatgga  6294400  Previous    Next  AGI:  At1g18270.1    Description:  ketose-bisphosphate aldolase class-II family protein. similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68226.1); similar to hypothetical protein OsJ_020022 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36539.1); similar to hypothetical protein OsI_021649 [Oryza sativa (indica cultivar-group)] (GB:EAZ00417.1); contains InterPro domain 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815); contains InterPro domain 3-hydroxyisobutyrate dehydrogenase-related, conserved site; (InterPro:IPR002204); contains I Range:  from: 6283405    to: 6293864    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g18280.1    Description:  protease inhibitor/seed storage/lipid transfer protein (LTP) family protein. similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G73560.1); similar to Os06g0711900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058554.1); similar to hypothetical protein OsI_023563 [Oryza sativa (indica cultivar-group)] (GB:EAZ02331.1); contains InterPro domain Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); contains InterPro domain Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140) Range:  from: 6294326    to: 6295357    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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