Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------AHL20(2)                                                          --------->ATHB51                                                          --------->AHL20(2)                                                          <---------ICU4                                                         --------->ICU4                                                       --------->YAB1                                                       -------->HAHB4                      <---------AHL20(2)                                                       <--------HAHB4                     --------->AHL20(2)                                                       <---------ICU4                     <---------AHL20(2)                                                       --------->ATHB51               --------->AHL20(2)                                                       <--------ATHB1              -------->HAHB4                                                      <---------ATHB51             <---------ICU4                                                      --------->ICU4               --------->YAB1                                                      <---------YAB1              <---------ATHB51                                                      --------->AHL20(2)          --------->ICU4                                                    --------->YAB1              --------->YAB1                   <---------YAB1           <------MYB83 <---------YAB1        <---------YAB1                <---------AHL20(1)          <------MYB46(1) <---------YAB1    --------->AHL20(2)                <---------AHL20(2)         --------->MYB59<---------AHL20(2)  <---------AHL20(2)      --------------->AtSPL8  <---------AHL20(2)   <---------YAB1          --------->AHL20(1)  xxxxxx    --------->GLK1(2)         --------->AHL20(2)  <---------AHL20(2)       <---------AHL20(1)  ------ ----DOF2       --------->AHL20(2)--------->YAB1  --------->AHL20(2)       --------->AHL20(2)  <-----   acaacaattctgttccattttattttaggggtttaattagaaaatttggtattttaataattattttttagttgaaatattttaataatgaattaaatga  6235500                                                                <---------ARR11(3)                                                                --------->ARR11(3)                                                               <---------CCA1(2)                                        ----------------->AG --------->AHL20(2)                                  --------->AHL20(1)         <---------AHL20(2)                                  <---------AHL20(1)         --------->YAB1                                  <---------ARR11(3)        <---------YAB1                                  --------->ARR11(3)      --------->YAB1                   --------->ARR11(3)                ----------->GT1  --------->CCA1(2)       --------->AHL20(2)                --------->GLK1(2)         --------->AHL20(2)--------->TOE2(3)             <---------AHL20(2) <----------DOF2<---------ARR11(3)     <---------AHL20(2)    --------->TOE1(3)             <---------YAB1     =========================    --------->AHL20(2)  --------->CCA1(1)              --------->CCA1(2)    <---------------AGL15 xxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ARR11(3)    <---------ARR11(3)    --------------->AGL15 --------->AtSPL8       --------->RVE1(1)           ----------->GT1<----------DOF2        --------->RVE1(1) ----------AtSPL8   --------->AHL20(2)  ====================================================MADS_MADS   gtactattttataaaatgttgaaaaaataccttagatatatttcccaatatgtatagatataattatatctttatgttctttttggggcaaaaaatctac  6235600                                        <---------YAB1                               --------->YAB1                                             <---------TOE1(3)                              <---------YAB1                                            <---------AHL20(2)                             --------->AHL20(1)                                        <---------AHL20(2)                             --------->AHL20(2)                                     <---------ICU4---                             <---------AHL20(2)                                     --------->ATHB51                            --------->YAB1                                          <--------ATHB1<--                            <---------ICU4                                          --------->AHL20(2)                         --------->YAB1 ----------->TBP                             <---------AHL20(2)                        --------->AHL20(2)       <-------GAMYB                     <---------YAB1 <--                        <---------AHL20(2)      <---------MYB46(3)               --------->YAB1   <--                      <----------DOF2 <---------------AGL15      <-----------GT1<---------YAB1    ---                     <---------ANAC58 --------------->AGL15   --------->YAB1  --------->YAB1 --------                 <------------CBF --------->AHL20(2) <---------YAB1    <---------MYB52(1) <---------TOE2(3)           <---------ATHB12<---------YAB1      <--------P  ----------->GT1   <-------TEIL---------->DOF2      --------->YAB1 <---------ANAC58<-----------------AGL3--------->YAB1--------->MYB52(2)---------- =====================================================MADS_MADS  --------->ARR11(3)--------->ICU4 ---   attttctatactaatcgtttattgctttaattataataaactataaatggttgttatgaaatagtaataacttgttagtttcataataatttaaagttaa  6235700                                                                      <---------AHL20(2)                                                           --------->ANAC58                                                           --------->ANAC58   <---------AHL20(2)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2)                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------>ARR11(3)                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------AHL20(1)                         --------->ANAC58 --------->ZAT18                      xxxxxx -------ARR11(3)                         --------->ANAC58 <---------ZAT18                  --------->LBD16 -------AHL20(2)                  ---------->DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ARR11(3) ------>AHL20(1)             ----------->GT1    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->LBD16 ->AHL20(2)             <-----------RAV1(1)  <---------ALFIN1         --------->AHL20(2) ----------->RAV1(2) ->GT1                  <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR14(3)  - ------>AHL20(2)    ------>ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ARR11(3)  =   tatattaaaatatcaaaaattcctatttgttgggaaaaaagacacccccatggcccatagtacgcttcaaaattaaaaacaaggtctccctccctgaaac  6235800                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  --------->AtMYB61                            <-------TEIL                                          <xxxxxxxxxxxxxxxxxx                          <---------SPL7                                         ------------>CBF                         --------->TGA1a                                       <---------ALFIN1                         <---------TGA1a                                      <xxxxxxxxxxxxxxxxxxxxxx                         <xxxxxxxxxxxxxxxxsmallRNA(i)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         ==========================bZIP_DOF                <---------At4g35610                      <---------ETT(2)                                     --------->At4g35610                    ------>MYB83                                        <---------ZAT2                    --------->MYB52(1)  <----------DOF2                 --------->ZAT2          -----                    ------>MYB46(1)     <---------DAG2                  <---------At4g35610     <---- xxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)          --------->At4g35610 xxxxxxxxx --------->DOF2 <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->MYB46(3) x ==================================bZIP_DOF <-----------GT1            <-----------RAV1(1) <xxxxxxxxx   tccaaagtccgaaactaaaacctatcgacgtccgtctcacaactttttacaaatttctcatcgtcttcgttctctgctgctccaccaatgtcgaagaatc  6235900                                      --------->TOE1(3)                                --------->LBD16                               <---------ANAC46              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <------ZmHOX2a(1)      <---------ANAC58      <---------TOE2(3)        <---------ANAC58      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <----------CDC5        ------>ZmHOX2a(1) --------->LBD16          --------->At4g35610 xxxxxxsmallRNA(i2)   <---------ARR14(2) xxxxxsmallRNA(si3)   ------>MYB46(1) --------->TOE2(3) xxxxxsmallRNA(fl3)   ------>MYB83    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ZAT18 xsmallRNA(si3)<---------MYB52(2)   ------->TEIL                                   <xxxxxxxxxxxxxxxxx ---->YAB1   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         ------->TEIL           <---------AHL20(2) -----ICU4   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------CCA1(2)    <---------GLK1(2) xxxxxxxxxxxx>smallRNA(si3)  ------>NtERF2           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <------ZmHOX2a(1)     --------->YAB1   <----------DOF2 xxxxxxxsmallRNA(i)   --------->ARR14(2)    <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   atcccgatgaggatgaaacaaacctatcctctgccgtgaacctcaatttataggatgtatctttgaaaaaacattcagaattttttgggcccttttcaat  6236000                                                                                    <---------ANAC58                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              --------->ANAC55(1)                                                                              <---------ANAC55(1)                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                              <---------ANAC58                                                                              --------->ANAC55(2)                                                                              <---------ANAC58                                                                              <---------ANAC55(2)                                                                              <---------ANAC46                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  --------->REM1(1)  <---------ANAC58                                               --------->TOE1(3)     <---------ANAC46  --------->SPL7                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->ARR14(2)                <---------ANAC58  ------->TEIL                                   <---------ARR14(2)            <---------ANAC58   <---------ANAC58                              <---------TOE2(1)--------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC58  --------------->AtSPL3                      --------->TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 --------->ZAT18  <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <----            ---------->DOF2   <---------TOE1(1)<xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------AHL20(2) --------->YAB1 --------->ALFIN1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxsmallRNA(si3)----------->GT1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   agcattttttttgacaaagcgcaatgttaaatacgaggattggggctaaccttcaccagtttgacgagcttgtgtggattacgtaagcgtacctcgcggt  6236100                                                        --------------->AGL15                                                <---------ANAC58                                                <---------ANAC46                                                <---------ANAC58                                            <-------GAMYB                                          <---------ANAC46                                ----------------->AG   <---------ANAC58                                ========================================MADS_MADS                                <-----------------AGL3 <---------ANAC58                           <-------TEIL   <---------ANAC58                                      <----                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->ARR14(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     ------->GAMYB <xxxx                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       --------->ANAC46   -                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------AHL20(2)   <---------ARR14(2)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->YAB1  --------->MYB52(1)   -                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ANAC46<---------At5g28300  <--------  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ANAC58     ----------->GT1<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(i2)   ------>ZmHOX2a(1)<---------MYB52(1) --------->GLK1(2)<-----------GT1 <------NtERF2 - ------DOF2     --------->TOE2(3)<---------------AGL15<-----------------------TaNAC69(2)   <---------RAP2.6(3)   ttatgtcgaagaatagttccttagtcacatacatcccttatttggcgtttgcgagtttcttgcaatagtaaattaccgtctcaacggcagagccggtctg  6236200                                                                          <---------AHL20(2)                                                                       --------->AHL20(1)                                                                    <---------AHL20(2)                                                                    --------->YAB1                                                                 <---------ICU4                                                                 --------->YAB1 -------HVH21  <---------YAB1                                   --------->ICU4 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <---------YAB1 -------->AtLEC2                                              --------->YAB1---------->DOF2 -------->ANAC58     --------->AHL20(2)                --------->YAB1  <---------AHL20(1)       ----- -MYB52(1) <---------DAG2             <---------AHL20(2)     --------->AHL20(2)                 <---- -------->ANAC58--------->YAB1      <----------DOF2 <---------ICU4  --------->AHL20(2)      <--------   tcatgcaaaaatgccttatgaaaataaacaaattgtgtcttttatttgtttgcataatcacaaataataataatatataaaagttatactaaaactttat  6236300                                                                    <---------AHL20(2)                                                                <---------AHL20(2)                                                             --------->AHL20(1)                                                             <---------AHL20(2)               <------                                             <----------ID1  <---------AHL20(1)               <------           <-----------GT1                   ----------->GT1<---------AHL20(2)         --------->ARR11(3) ---->HSFB2a(2)                             ----------->GT1 --------->AHL20(2)         <---------GLK1(2) -----HSFB2a(2)  <---------AHL20(2)    ---------->DOF2      --------->YAB1           <---------TOE2(3) --DOF2 --------->YAB1           ----------->GT1   <----------ID1   --------->AHL20(2) <---------ARR11(3)   agaacattttttataacattttataagcgttttgtaagtaaaaaagagggaaaaaaacaaaattatatttttaaatatagctctatttagatttttgcct  6236400  Previous    Next  AGI:  At1g18130.1    Description:  tRNA synthetase-related / tRNA ligase-related. similar to threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) [Arabidopsis thaliana] (TAIR:AT5G26830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40920.1); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Threonyl-tRNA synthetase, class IIa; (InterPro:IPR002320) Range:  from: 6235888    to: 6238792    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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