Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->TOE1(2)                                     --------->ANAC58                            <-------TEIL                                     --------->ANAC58                         --------->ATHB12                                     --------->ANAC46                        --------->ICU4                                     --------->ANAC55(2)                     <---------YAB1              --------->ANAC58       <---------ANAC55(2)                   --------->YAB1     -------              --------->ANAC58      <-------TEIL                    --------->ANAC46          -------      --------->YAB1                ------->TEIL                    --------->ANAC58         <-------      <---------ICU4            <---------------AtSPL3              --------->ANAC58     --------->ANAC46     --------->ICU4           <-------TEIL                         --------->ZAT18       --------->ANAC58    --------->AHL20(1)    <---------ARR14(2)            ----------->GT1   <---------ATHB12  ------->TEIL   --------->YAB1         --------->ARR14(2)       ---------->DOF2 <---------ZAT18       --------->ANAC58   tacaaaaataatgaccacgataaatgagtatatacatgtacgtaagataaatgtaaagttgtatatttgtgcgccattcatgattcattccacgtatata  6221800                                                                                                 ----                                                                                          <----------                                                                                         --------->bZIP60(1)                                                  --------->AHL20(2)                     <---------bZIP60(1)                                                 --------->YAB1                          --------->TGA2(1)  <---------MYB46(3)                         <---------YAB1                            <---------ICU4 -->AHL20(1)  --------->ANAC58               ----------->GT1   <----------DOF2 <---------ZAT18------- -->ARR11(3)  --------->ANAC58            ----------->TGA1  --------->ANAC58  <---------ANAC58<------ --CCA1(2)  ---------->DOF2              <---------WOX13(1) --------->ANAC58  <---------ANAC58-------   ttgtttgttcgaatcaaagcaaactcagaaaatgaaaacgctgaatgacgataaaaatagggacgcttttgttcgaattagcgtgcccattatgtcacga  6221900     <-------TEIL                ------>ZmHOX2a(1) <---------TOE2(2)              --------->TOE2(3)            <---------ICU4 --->TEIL                       <---------ANAC46            <---------ATHB12 -HVH21                     --------->ARR14(2)            --------->GLK1(1) -->ANAC58                  <---------ARR14(2)       --------->ANAC46 ---MYB52(2)               <------ZmHOX2a(1)  --------->AtMYB61                      <---------ARR14(2) -->ANAC58          ---------->DOF2       --------->MYB46(3)--------->ICU4           --------->ARR14(2)   acgtagattcaagtcttggccataaaacaggattccttatagcatccaccaaaacacgagaaatcattctcaaaaacagtctctccaaatccgaactaaa  6222000                                                --------->HSFB2a(2)                        <---------ZAT14      <----------DOF2                        --------->ZAT14     <---------ANAC58              <----------DOF2                    --------->ARR11(3)      <---------ANAC58           --------->ANAC58                  --------->MYB59          ---------->ID1              --------->ANAC58                 <---------ICU4    <---------ANAC58       <---------------AGL15       ----------->GT1              --------->YAB1       <---------ANAC58       --------------->AGL15     <-------MYC3             <---------AHL20(2)    <---------ANAC46      ----------------->AGL1     ------->MYC3            --------->AHL20(2)    <-------TEIL  <---------HSFB2a(2)    --------->ANAC46   caactcatagcccatataataaggtctgtagtgggatgcgtttttggcttttagaacataccaattggagaacacgctttcttacacatggaaacaaatt  6222100                                                              <---------AHL20(2)                                                             --------->AHL20(2)              --------->ARR14(2)        --------->TOE2(2)  <---------AHL20(1)              <---------ARR14(2)        --------->TOE1(2)  --------->AHL20(1)             ------>MYB46(1) --------->ANAC58             --------->AHL20(2)                  -------           <---------MYB111(1)        <---------YAB1   <---------ICU4                         *TSS          --------->ANAC46   --------->ANAC58         --------->ICU4                         --------          ----------------->AGL2      <---------TOE2(3)<---------AHL20(2)              --------->TOE2(3)  --------->ANAC58      ----------->ARR10           --------->YAB1                   ------->TEIL  --------->ANAC58  --------->At4g35610--------->YAB1 --------->AHL20(2)       <---------AHL20(2) ------->TEIL------>MYB83  --------->CCA1(2)     ----------->GT1              --------->AHL20(2)   acgaacgcttccaccaaatatgggctgagataagcccattaacataagacccagtaataaatatataatatgagcccatattaaatgaaccctaatccat  6222200                                                                    --------->LBD16                                                                   --------->LBD16                                                                  --------->LBD16                                                              --------->ABI4(1)                                                              ------>NtERF2                                                              <---------ATERF1(1)                                                             <---------ALFIN1                                                             --------->DEAR3(1)                                                            --------->ATERF1(1)                                                           <---------ATERF1(1)                                                           ------>NtERF2                                                           --------->LBD16                                                         <---------LBD16                                                <----------DOF2  <---------LBD16              <---------AHL20(2)     --------->ANAC58  <-----------GT1              --------->AHL20(2)     --------->ANAC46  --------->ARR14(2)                         <--          --------->YAB1             --------->ANAC58  <---------ARR14(2)                         --- -------->AGL15                    <-----------GT1    <---------GLK1(1)                           --- --------->AGL3         ----------------------->TaNAC69(2)--------->ANAC46        --------->TOE2(3)   ttttagtttctatcatataaatagcttcttgtgtttttcacgcccttcttctttgtatttccgcctcccccgagaaaacgaaaaccctagtttcagaggc  6222300                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                                                --------->ABI4(1)                                                                               --------->DEAR3(1)                                                                               <---------ALFIN1                                                                            ------->GAMYB                                                     --------->ANAC58       --------->ANAC46                                                     --------->ANAC58  <------NtERF2                                                     <---------ALFIN1 ------>NtERF2                                                  <---------ZAT14    <---------ANAC46                                                  --------->ZAT14    <---------ATERF1(2)                                                  --------->ZAT18    --------->ATERF1(2)                    <------NtERF2                 <---------ZAT18    --------->bZIP60(1)                  <---------ANAC58             <---------ANAC58      <---------bZIP60(1)    <--------        --------->ANAC58                       <---------ANAC58     --------->RAP2.6(3)     ---------        --------->ANAC58<------ZmHOX2a(1)      <---------ANAC46   ----------->HVH21       --------->DOF5.7(2) -------At4g35610 <---------ANAC58        <------NtERF2           ----------->TGA1     <---------ATHB12 ------>At4g35610 <---------ANAC46     <---------ZAT18       <---------bZIP60(2)------>NtERF2 ------>GLK1(1)  <---------LBD16       --------->ZAT18    ----------->HVH21--------->MYB46(3)   atctccagacaccgaaaatggcggaaggactcgttttgaagggcaccatgcgtgcacacactgacatggtgacggcaatcgccaccccaatcgataacgc  6222400                      ----------->RAV1(1)                      ------>NtERF2                     ----------->HVH21                    --------->LBD16        --------->ARR14(2)                          <------NtERF2                   --------->ANAC46        <---------ARR14(2)       --------->SPL7   <---------ANAC58                   --------->LBD16     <---------LBD16             --------->MYB52(1)<---------ANAC58                  <---------LBD16     <---------ANAC46       ---------->DOF2   ---------->CDC5             --------->ZAT2      <---------ICU4          --------->ANAC58   --------->At4g35610             <---------ZAT2   --------->WOX13(1)         <----------ID1 <---------REM1(1) -DOF5.7(2)  <---------At4g35610 <--------HAHB4          --------->ANAC58   <---------At4g35610 ->DOF2      --------->At4g35610<---------ATHB12       <------ZmHOX2a(1)--------->ALFIN1       <-----   agacatcatcgtctcagcttcccgcgacaaatccatcattttgtggaaactcaccaaggacgacaaagcctacggtgtagctcagaggcgtctcactggt  6222500                                                                 <---------DEAR3(1)                                                              ----------->HVH21                                                          --------->ZAT2                                                          <---------ZAT2                                                          <---------At4g35610                                                          --------->At4g35610                                                          <------NtERF2                                                          ----------->RAV1(2)                                                        <-----------RAV1(2)                                                       <---------MYB52(1)                                                      --------->LBD16                                                      ------>NtERF2    --------->ZAT2                                                     <---------LBD16   --------->At4g35610   <-------                                                     <---------ATERF1(2)                     <-------                                                     --------->ANAC46  <---------ZAT2  ------>ZmHOX2a(2)                                                     --------->ATERF1(2)              <------ZmHOX2a(2)                                                     <---------RAP2.6(2)             --------->ARR11(3)                                                     --------->HSFB2a(2)             --------->ARR14(2)                                                     <---------HSFB2a(2)             <---------ARR11(3)                --------->ARR11(3)                  --------->RAP2.6(3)<---------At4g35610  <--------               <------ZmHOX2a(1)                    <---------LBD16<------NtERF2     <---------ARR14(2) ------HVH21 <---------TOE2(3)------>ZmHOX2a(1)  <----------DOF2--------->SPL7 <----------DOF2<------   cactctcacttcgttgaggatgttgttctctcctccgatggacaattcgcgctttccggcagctgggacggcgagctccgtctttgggatcttgctgctg  6222600                         --------->ANAC46                                                    <-------                         --------->ANAC58                                               ----------->HVH21                --------->ATHB12                                         ------>ZmHOX2a(2)   <-------                <---------MYB46(3)                                      <------ZmHOX2a(2)    --------               <-------TEIL                   --------->DEAR3(1)       <---------ARR11(3)  <---------              --------->ARR14(1)            <---------ATERF1(1)        --------->ARR11(3)  ----------             <---------GLK1(2)              <-----------HVH21          <---------ARR14(2)  ----------             <---------ARR14(2)    ------->PIF5 <------NtERF2          --------->ARR14(2)------------    <---------ALFIN1     --------->ANAC58  --------->ANAC46        <---------MYB52(1) <---------O2  - --ZAT2      --------->ARR11(1)    <-------PIF5------>NtERF2      <-----------HVH21   <---------ANAC55(2) --At4g35610 --------->ARR14(2)   <---------ANAC58               ------->GAMYB        --------->O2 <- ---RAV1(1)<---------TOE1(2)      <---------ANAC58              --------->MYB46(3)    --------->ANAC55(2) ---ANAC46 <---------TOE2(2)    <------ZmHOX2a(1)            --------->MYB46(3)   ------->TEIL ------   gtgtctccactcgtagattcgttggacacaccaaggacgtgctctccgtcgccttctcactcgacaaccgtcagatcgtctctgcatctcgtgaccgtac  6222700  Previous    Next  AGI:  At1g18080.1    Description:  ATARCA (Arabidopsis thaliana Homolog of the Tobacco ArcA); nucleotide binding. Identical to Guanine nucleotide-binding protein subunit beta-like protein (ARCA) [Arabidopsis Thaliana] (GB:O24456;GB:Q9LDI1); similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 6222194    to: 6224144    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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