Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------ANAC58           <---------ANAC58                <---------ARR11(3)        <---------ANAC46--------->ANAC46          ------>MYB83  <---------ICU4    <---------ANAC55(1)--------->ANAC46          --------->ANAC58                <---------ANAC58--------->ANAC58                       <---          --------->ANAC58           <---------MYB46(3)   --------->ANAC58         ----------->RAV1(1) ---------DOF2 <---------CCA1(2)   <---------MYB52(1)   <-----------GT1          ------>ZmHOX2a(2)--- -GT1     ------>MYB46(1) <---------WOX13(1)          <-----------GT1<---------ANAC58          ------   tctttgtttaccaagccttatcttcttaattgctacagtttgttccgtctgcaaaattacaccccacaattacttccccttgatccaacaaaaacttcaa  6209100                                                --------->TOE2(3)                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                             <---------ARR14(2)                                             --------->AGP1                                             --------->ARR14(2)                                             <---------ARR11(3)                                        ------>NtERF2 --------->TOE1(3)        --------->ARR14(2)              <---------RAP2.6(3)        <---------ARR14(2)              ----------->RAV1(1)      --------->LBD16                  <---------ATERF1(2)     --------->ANAC46                  ----------->HVH21     <---------ANAC55(2)               --------->ATERF1(2)     --------->HSFB2a(2)          <---------GLK1(1)   --------->TOE2(3)     --------->ANAC55(2)        =====================HOX2a_HOX2a                          --------->TOE2(3)     <---------HSFB2a(2)        ======================HOX2a_HOX2a                     ----------->HVH21    <---------LBD16             <------ZmHOX2a(1)------>ZmHOX2a(1)                  --------->CCA1(2)  --------->ARR14(2)        --------->ICU4   <---------GLK1(2)                     --------->ARR11(1)  --------->GLK1(2)   <------ZmHOX2a(1)--------->ETT(2)                            --------->ARR11(3)  <---------ARR14(2)  ================================HOX2a_HOX2a                  <---------ARR11(3) ------ATHB12         ===============================HOX2a_HOX2a                 ----------->ARR10 ------>YAB1         ----------->GT1   <---------ETT(1)                        ---------->DOF2 --->WOX13(1)  ---------->DOF2--------->MYB59--------->ARR11(3)              --------->At4g35610 <---   tcaaaatccggaaccaaaaaagaaggagaaattaggaattgccgacagatcctaaaccctaattttgcaaacaaaaatcagcaaagatatgaccttagta  6209200                                                                                            <--------                                                                                           <---------LBD16                                                                                     <---------MYB52(1)                                                                                    ------>NtERF2                                                                                  <---------LBD16                                                                               --------->ATERF1(1)                                               <---------ANAC58                --------->At4g35610                                       ------->TEIL                            <---------ZAT2                                      --------->ARR14(2)      --------->ANAC46 <---------At4g35610                                      <---------GLK1(2)      --------->YAB1    --------->ZAT2                                      <---------ARR11(3)   ------>MYB83 --------------------->WRI1     <----------DOF2                  <---------ARR14(2)   ------>MYB46(1)    <---------ATERF1(1)    <---------ANAC58                --------->ANAC58    --------->ANAC55(2)  <---------RAP2.3(3)    <---------ANAC46                --------->ANAC58    <---------ANAC55(2) <---------At4g35610    <---------ANAC58        <---------ANAC58   <---------ANAC46         <----------DOF2<----------DOF2 ------YAB1                 <---------ANAC58   <---------ANAC58     <----------DOF2 --------->LBD16   tcagtggctttgaagacgactccataggtaccttgcccaagaacctcttgcttgagatacctatcagcaactttctttggctgctccggcattttcgggt  6209300                --------->ATHB51                <---------ICU4                <------------ATHB5                --------->YAB1               <---------ATHB12           <---------ATHB12                   <---------O2          --------->ANAC58                    --------->TGA1a          --------->ANAC58                    <---------TGA1a          --------->ANAC46                    --------->O2                  <---------YAB1         ------>MYB83          <----------DOF2--------->ANAC46    <----------DOF2 --------->HSFB2a(2)   <------NtERF2          ===============================bZIP_DOF    ----------->GT1 <---------HSFB2a(2)  ------>NtERF2         <-----------GT1      <---------ANAC58 --------------->AGL15 -ANAC46 ------>MYB46(1)       =========================bZIP_DOF <---------ANAC58 <---------------AGL15   ttttcagaacccactcaataatcgcgcctctctctttcttcttaattcacgtcgctagaattcgattgctttccgatttttattctaaattgagtaaaat  6209400                                                     <------NtERF2                                                     <---------LBD16                                                   --------->ARR14(2)                                                   <---------ARR14(2)                                                  --------->ATERF1(1)                           <---------TOE1(3)     --------->LBD16                 --------->LBD16                 ------>NtERF2                         --------->ANAC58                 ----------->GT1                 <---------ATERF1(1)                   --------->RAP2.6(2)                --------->LBD16                <---------LBD16                    --------->At4g35610               <---------ANAC46             <---------At4g35610                   <---------At4g35610               <---------LBD16              <---------GLK1(1)              <---------ANAC46              <---------LBD16               --------->At4g35610            <---------ANAC58             --------->MYB52(1)             <---------ZAT2                 <---------ANAC58            --------->CCA1(2)               --------->GLK1(1) --------->DAG2 <------NtERF2           <---------ARR11(3)        --------------------->WRI1           <------NtERF2--------->ANAC46           <---------ARR14(2)        <----------DOF2------>NtERF2    <---------MYB46(3)--------->ANAC58           --------->ARR11(3)      <---------At4g35610 --------->LBD16  <---------DEAR3(1)           --------->ARR14(2)      --------->At4g35610<---------ANAC46 <---------MYB52(1)       <------ZmHOX2a(1)   <---------TOE2(3)--------->ZAT2   ---------->DOF2------>NtERF2    *TSS   cgacgatgaggaagataccgggaaaatttagggtttcagctttgagagctccggctccggagaaaaagtagccgttggcgcgtttgcagacgcaatcggc  6209500                                          <----------DOF2                                          <---------DAG2                                       <---------AHL20(2)                                       <-----------GT1                                   --------->ATHB51                                   -------->ATHB1                                   <--------HAHB4                                   --------->AHL20(2)                                  --------->ICU4                                  <---------ATHB12                               ------------>ATHB5                                                  <-                           --------->ANAC58                                                  <-------                  ---------->DOF2 <---------ATHB51                                           --------                 --------->AHL20(2)<---------AHL20(2)          <---------AHL20(2)      <---------YAB1           ----------->RAV1(1)------------>CBF                --------->AHL20(2)   <-----------TBP --          <----------ID1   --------->ANAC58          <-----------TBP     <---------ATHB12---------->DOF2   taatcgagggaaacaacaaataaagagaaacgcccaattatttacttttctagttttttatacatttaatatccaaacattttcgatttataaaagagaa  6209600             >>>>>>>>>RAP2.2           <---------ARR11(3)      --------->AHL20(2)   --------->AHL20(2)  <---------YAB1  <---------AHL20(2)                      --------->YAB1 --------AHL20(1)                         ----------->GT1                                 <---------- ---ID1<---------AHL20(2)             <---------AHL20(2)                       --------->TOE1(3) --->GT1   --------->ARR11(3)         --------->AHL20(2)                       --------->TOE2(3) ------->AHL20(1)                    --------->AHL20(2)                     <-----------GT1<---------   aaatattatttaatatctaaacttttaaacaatagctaaattaatcgtgaatttttgattttttgaaatgactgttttatacctcaacaaatttaaccta  6209700                         <-------MYC3                         ------->MYC3                         ------->MYC2                         <-------PIF5                         ------->PIF5                         ------->MYC4                         <-------MYC4                         <-------MYC2                        --------->O2                        <---------TGA1a                        <---------O2                                                         <-------                        --------->TGA1a                                                      <-------                   --------->ANAC58                                                          --------                   --------->ANAC58                                                          --------     =============================bZIP_DOF       --------->GLK1(1)                  --------->ARR14(2) -GT1---------->DOF2    --------->ANAC55(2) --------->At4g35610                     <---------ARR14(2) --GT1            --------->WOX13(1)        <---------At4g35610                    <---------CCA1(2)   taacctataaagcatattagcaatccacgtgtttttgctagagtttagctgatttcttaagagctatcgttgctgtttctcgtccatatccccttccttg  6209800                                                                 <---------ANAC46                                                              <---------DEAR3(1)                                                             --------->ATERF1(1)                                                           <---------ANAC46                                                         <---------MYB46(3)                                                        <---------DEAR3(1)        <------NtERF2                                                        --------->ALFIN1          <---------At4g35610                                                        <---------AtMYB61        <---------DEAR3(2)                                                   <---------ANAC58             <---------RAP2.6(2)                                                   <---------ANAC46 --------->ARR14(2)        <---------ARR11(3)                         <---------ANAC58<------NtERF2<---------DEAR3(1)        --------->ARR11(3)                     <---------ANAC58 <------NtERF2   --------->ETT(1) --ANAC58                                 <-------TEIL<---------ZAT2<---------ARR14(2)         ------ --ANAC58                              <---------At4g35610 --------->ALFIN1    --------->RAP2.6(3)--- ->TOE2(3) <----------DOF2             --------->At4g35610----------------------->TaNAC69(2)   ------ ------------->WRI1          <---------LBD16   <---------ANAC58 --------->ATERF1(1)      <-----------HVH21   atagtttcaagctctttgccagtaatccattcagggagtatagctgcatacttgcgaggtggtggaggcggatacttcattgtcggcttctggtcactag  6209900                                  <---------PCF2                                --------->MYB55(2)                                --------->ABI4(2)                                <---------MYB46(3)                               <---------AtMYB61                               <---------DEAR3(1)                          --------->YAB1         <------ZmHOX2a(1)  --------->ALFIN1                     --------->ANAC55(2)             ----     --------->LBD16        <---------DEAR3(1)    --------->ANAC46 <---------GLK1(1)           <-----   <---------LBD16   --------->At4g35610          --------->TOE2(3)--------->GLK1(1)           ------ --->ANAC58         --------->GLK1(2)         <---------ALFIN1   <---------ANAC55(2)          <------ ------->DOF2      <---------GLK1(2)     -------->P            <-----------RAV1(2) <---------TOE2(3) --->ANAC58  <---------ARR14(2)--------->ALFIN1 <-----------------AGL1     <---------ICU4  ------>ZmHOX2a(2)   caaagcccggaggaggttttggaatctgaagcggtggttcccttaccctcaccctcaatggaacatcaggtatcccataatcactaagtttgatctcagg  6210000  Previous    Next  AGI:  At1g18040.1    Description:  AT;CDCKD;3/CAK2AT/CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase. Identical to Cyclin-dependent kinase D-3 (CDKD-3) [Arabidopsis Thaliana] (GB:Q9LMT0;GB:Q9LM42); similar to AT,CDKD,1/CAK3AT/CDKD1,1 (CYCLIN-DEPENDENT KINASE D1,1), kinase [Arabidopsis thaliana] (TAIR:AT1G73690.1); similar to CDK-activating kinase [Medicago sativa subsp. x varia] (GB:AAK97227.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kina Range:  from: 6206864    to: 6209493    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g18050.1    Description:  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30370.1); similar to hypothetical protein OsI_006404 [Oryza sativa (indica cultivar-group)] (GB:EAY85171.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061) Range:  from: 6209764    to: 6211581    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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