Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->TOE1(3)                            --------->GLK1(1)             ----------->GT1                  <----------DOF2                              <---------GLK1(1)            --------->YAB1                <---------ZAT14                               <---------TOE2(3)            <---------ICU4           --------->ICU4                       --------->ANAC58 --------->CCA1(2)           <---------ATHB12          <---------YAB1                       --------->ANAC58--------->ARR11(3)         --------->WOX13(1)        --------->YAB1                         --------->ANAC46<---------ARR11(3) --------->AHL20(1)              --------->ARR11(3)                <---------ICU4       <---------YAB1 <---------ARR11(3)         ----------->GT1   --------->TOE2(3)---------->DOF2 ---------->DOF2      <   caatatactatcaatcagtataaaactaagaagtatatcatgagtaaactttaaaactaaaacaataaagcattacaagaaaaaagcattaagatatcag  6191300                                                                                  --------->WRKY12                                                                       --------->ANAC58                                                                       <----------ID1                                                                       --------->ANAC46                                                ------>ZmHOX2a(1) <---------HSFB2a(2)           <---------At4g35610             <------MYB46(1)        --------->HSFB2a(2)        <-------           --------->ZAT2                  <------MYB83      <------MYB46(1)      --------->WRKY38(1)       <---------HSFB2a(2)                <---------AtMYB61  <------MYB83        <---------MYB52(1)xx       --------->HSFB2a(2)               <---------MYB52(1) --------->MYB59 --------->MYB52(1)    --- -----------GT1                         <-------GAMYB   <---------ZAT6 --------->ANAC58      <-------   taaaaccttctcgagctctcttgtcttgatcacatcaaactccgttggtcctcccatagagataggttctgaaacgccaaaccgttgcccattttgctgg  6191400                                                                                                -----                                                                                               <-----                                                                                              -------                                                                                         <---------ICU4                                                                                         --------->ATHB12                                                                                         -------->HAHB4                                                                                         <--------ATHB1                                                                                         --------->ATHB51                                                                                        --------->AHL20(2)                                                                                      --------->YAB1-      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 --------->ANAC46  <------   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  --------->TOE1(2) <---------WOX13(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)                                         --------->GLK1(2)--------->ICU4  --------->ANAC58                             <----------DOF2        <---------GLK1(2) <---------AHL20(2)  --------->ANAC58           <------------------------ANAC81          <---------ARR14(2)<---------ATHB51 --ANAC58                   <----------DOF2---------->ID1          --------->YAB1   --------->AHL20(2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <-----------GT1       --------->WOX13(1) --------->YAB1 <-- ------>ZAT6         <----------DOF2  <----------DOF2--------->TOE2(3)--------->ARR14(2)<---------YAB1 --ANAC58     ------>ZmHOX2a(1)   ------>ZmHOX2a(1)<-----------GT1<---------ATHB12--------->AHL20(2)-   acactagccatctatcctacttactttgctcttttcctctcttttttctcttttttcttaatatttcaatcagattctacgaaaataaaaataattgatc  6191500                                                                  <---------ANAC58     <---------ANAC58                                             <---------ANAC58     <---------ANAC58                                          ------->PIF5  <-------MYC3                                                 ------->MYC2  <-------MYC2                                                 <-------PIF5  ------->MYC2                      <---------ARR14(2)         <-------MYC2  ------->MYC3                      --------->ARR14(2)         <-------MYC3  ------->PIF5                      <-----------ARR10          ------->MYC3  <-------PIF5                     ------>MYB83               <---------ANAC46 ->ZmHOX2a(2)             <-----------HVH21                   <---------ANAC58 ----GLK1(1)             --------->O2                         <---------ANAC58 -->ARR11(3)            --------->LBD16                      ------>NtERF2 ----->NtERF2           ------>NtERF2                        --------->LBD16<------MYB46(1) ---ARR11(3)          <---------LBD16   ------>ZmHOX2a(1) --------->At4g35610 -------LBD16  <------MYB46(1)     ------>MYB46(1)        --------->ZAT2    <------MYB83 -------->LBD16<------MYB83      <---------MYB59          <---------At4g35610        <-------GAMYB  -   tccgcgtgcttgttatttggtttctccgcgtgagaccaaatcctcgctggaaaacgaatcagccgcgtgcttgttatttggtttctccgttgcagtcaaa  6191600                                                                      <-----------HVH21                                                                   <---------ICU4                                                                 --------->ARR11(3)                                                                 --------->GLK1(2)                                                                --------->YAB1        ---------->DOF2                                                               --------->ICU4    <-----------HVH21                          <---------ARR14(2)               <------NtERF2      <---------At5g28300                          <---------ARR11(3)              --------->ANAC46   <---------WRKY38(1)                          --------->ARR14(2)              --------->LBD16   ----------->HVH21                          --------->GLK1(2)               ------>NtERF2 <---------ANAC58                 <-------TEIL                            --------->ANAC46  <-----------HVH21            ----------->RAV1(1)                          --------->LBD16<---------ANAC46         --------->HSFB2a(2)                             <---------ETT(1)<---------MYB46(3)  --------->GLK1(2)       <-----------ARR10              <---------LBD16--------->ETT(1) <---------GLK1(2)<---------MYB46(3)                    <---------LBD16 <---------ANAC58 -------->At4g35610      <---------GLK1(2)  --------->HSFB2a(2)<---------ATHB12 --------->DEAR3(1)---   tcagattccttctccaacattcgttgagaatcttacgcttaatcttctcggtctgtttcccggcaataatcttgtcgggtcaccgtcgcaaagaatgaga  6191700                                                                            <---------ALFIN1                                                                          ----------->RAV1(1)                                                                          <---------ALFIN1                                                                          ===========================                                             ---------->DOF2             <------NtERF2                                          --------->ANAC58             --------->PCF2   ----------->GT1                        --------->ANAC58      <---------YAB1          <-----------GT1  --------->DAG2                <---------AHL20(2)           --------->AHL20(2)    <---------AHL20(2) *TSS                           --------->AHL20(2)           <---------AHL20(2)   --------->AHL20(2)- ---------->DOF2             --------->AHL20(1)              <---------AHL20(1)<----------DOF2    --- -------->GT1                <---------ARR11(3)   --------->GLK1(2)    <---------TCP15(1) -----------   tagtaaagtaaacacaaacaagttgcaagaatatataatttagtacccaaagtttctgtatattttattttaggccccacacttttaaatttacctgaag  6191800                                 --------->ANAC46                               --------->ZAT6                             <-----------GT1                         --------->ICU4                    --------->ANAC46           --------->ARR14(1)         <---------AHL20(2) <---------YAB1    --------->ARR11(1)        --------->AHL20(2)<---------ICU4     -------->HAHB4      --------->ARR11(3)        <---------AHL20(2)<--------HAHB4     --------->ATHB12    <---------ARR11(3) =RAV  --------->YAB1----------->GT1  --------->ANAC46          --------->YAB1 -------->TOE2(3)--------->ARR14(2)--------->ZAT14             <---------YAB1                     <-- ---->TEIL       <---------ARR14(2)<---------ZAT14  <---------MYB52(1)  <---------CCA1(2)   --------- >RAV1(2)<---------YAB1  <---------YAB1     <---------ATHB12 --------->YAB1               <---------YAB1   taccttgaattttaattcgtatacggtattattacactacacataaatgattcggtttcttaaccatgatattcgtatatttgtgcaagtttatcaatcg  6191900                                                                                                    -                                                                                                   --                                                                                               ------                                                                                              ------>NtERF2                                                                                             --------                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           <---------LBD16                                   <---------------AGL15                                <-------GAMYB             --------->ANAC58      --------------->AGL15         --------->ANAC58      <---------MYB46(3)             --------->ANAC58     ----------------->AGL3         --------->ANAC58      <-----------RAV1(1) -------ANAC46           <----------DOF2                         --------->ANAC46      --------->MYB52(2) >WOX13(1) ---------->DOF2      <-----------GT1   <---------REM1(1)   --------->ICU4------------>MYB.PH3(2)   gcgtaagttttgcgaaagcatttgtgactttgtataaccaattttagttttgttgaagcatttgtgtaagcaattttggaacttatagtttgttgcggac  6192000      --------->AHL20(2)  <---------YAB1  --------->ICU4 -------->YAB1                                                                             <--------- ------->ICU4                                                                    --------->ANAC58 --->SPL7           --------->SPL7                                               --------->ANAC58<--- ->LBD16            <-------TEIL         ------->TEIL                       <---------TOE2(3)  ------ --SPL7<---------AHL20(2)    <---------ZAT6                         <---------ANAC58<----------DOF2 < -ANAC46          <---------SPL7    --------->YAB1                  <---------ANAC58<---------DAG2--- -ANAC58        --------->ALFIN1   --------->ICU4                  <---------HSFC1(2)      <---------DAG2 -ANAC58        <---------------AtSPL8<---------YAB1               --------->HSFC1(2)   <-----------GT1   gatgatgattttatataggtggtacgttgtagtggaaatgatgaaacttggagagttggacactgccgaagcttgtttgaggcaagctttttgccttatg  6192100                            <---------At4g35610                            --------->At4g35610                    <---------HSFB2a(2)                           ------->TEIL                  --------->ARR14(2) -DOF2                <---------ICU4                     <---------ARR14(2)                      ---- ------YAB1           -------->HAHB4                     ------->TEIL                            <--- --->ANAC55(2)       --------->ICU4 <-----------GT1     <---------CCA1(2)---------->DOF2    <-------- ---------WOX13(1)   <---------ATHB12              <---------MYB46(3)   <------ZmHOX2a(1)   --------- ------>ATHB12       <---------ATHB51      ---------->DOF2  <-----------RAV1(1)        ---------->DOF2   tgattgaaaaatatgttttgctaataatgcatctgaataaaccccttaagcagttgttgtatctgtggtctcgaggaaagggtagtctgtatagcccact  6192200  Previous    Next  AGI:  At1g17980.1    Description:  nucleotidyltransferase family protein. similar to nPAP (NUCLEAR POLY(A) POLYMERASE) [Arabidopsis thaliana] (TAIR:AT4G32850.9); similar to nPAP (NUCLEAR POLY(A) POLYMERASE) [Arabidopsis thaliana] (TAIR:AT4G32850.10); similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.8); similar to hypothetical protein [Vitis vinifera] (GB:CAN61208.1); similar to putative polynucleotide adenylyltransferase [Oryza sativa (indica cultivar-group)] (GB:AAW68016.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68118.1); contains InterPro domain Nucleotidyltransferase; (InterPro:IPR002934); conta Range:  from: 6187500    to: 6191701    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17990.1    Description:  12-oxophytodienoate reductase, putative. Identical to Putative 12-oxophytodienoate reductase-like protein 2 [Arabidopsis Thaliana] (GB:Q9C5W1;GB:Q9LDU9); similar to 12-oxophytodienoate reductase, putative [Arabidopsis thaliana] (TAIR:AT1G18020.1); similar to LEDI-5c protein [Lithospermum erythrorhizon] (GB:BAD06575.1); contains InterPro domain NADH:flavin oxidoreductase/NADH oxidase, N-terminal; (InterPro:IPR001155); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 6192064    to: 6194086    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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