Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <---------ANAC55(2)                                                                             <---------ANAC58                                                                             <---------ANAC55(1)                                                                             --------->ANAC55(2)                                                                             <---------ANAC46                                                                             <---------ANAC58    ----                             --------->ANAC58                               <-------TEIL       ------                             --------->ANAC46                            --------->At4g35610   <-----                             --------->ANAC58                            <---------At4g35610   <----- ------>HAHB4         <---------YAB1         ---------->DOF2           <-----------RAV1(2)     <----- ------->YAB1      <---------YAB1     <---------ZAT6             <---------AHL20(2)        --------->At5g28300   ataatacattcacaaaaacttcttattatacaagaaactagtgagaagaaagtaagcgcgaacagatttaaactcagatgcgtatgaagacacggtgatg  6153600                         <---------ICU4                         --------->YAB1                         <--------HAHB4                        <---------ATHB12           --------->ARR14(2)                      <-----------GT1              <---------ARR14(2)                     <---------AHL20(2)           ------>MYB46(1)                    --------->AHL20(2)          <---------MYB59           <-----------GT1               <------MYB83 ------->HVH21      <---------AHL20(2)   <------MYB46(1) --->bZIP60(1)<---------MYB59            <---------ANAC55(2) ----O2<---------ZAT6--------->AHL20(2) --------->MYB111(1) <---------ATHB12                        < ----bZIP60(1)--------->TOE1(3)         --------->MYB59   --------->WOX13(1)                        - ----bZIP60(2)--------->TOE2(3)   <---------ATHB12------>MYB83                         ----------->GT1   tgactagtagttttaacctaaatttaatcattttcaatcgattaggtataccaaatcccccaatcaaacacacagagaagttgaaaacccagtaaattcc  6153700                                                               ----------->HVH21                                                             <---------At4g35610                                                             --------->At4g35610                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                           --------->CCA1(1)                                                           <---------RVE1(1)     --------->ORA47(1)                                    --------->RVE1(1)     ----------->RAV1(1)                                   <---------GLK1(1)    --------->DEAR4(1)                                     --------->GLK1(1)    --------->DEAR3(1)                                    --------->ARR11(3)                ---------    --------->At1g77200                               ---------->DOF2            --------->LBD16    <---------ETT(1)                              ---------->DOF2               <---------LBD16    --------->DREB2C(2)                         --------->ANAC58               <---------LBD16      - ---------MYB55(2)           ---------->DOF2    --------->ANAC58         ----------------->AGL1     < -------->MYB46(3)  ------>ZmHOX2a(1)       ------->TEIL  <---------ARR11(3) --------->GLK1(2)      <   caaacaccgacaaaaactaatcctatctacagaaagaagcgaaatgaatcaagaaagaaagatatctgacattttgcaaaatcggggattagagaaaccc  6153800        ----------->GT1                              <---------At5g28300    --------->LBD16                                 <-----------GT1  <---------LBD16                                ------->TEIL >GLK1(1)----------->GT1    ----------->GT1 <---------ICU4                <---------ANAC58 -------->ARR14(2)         ----------->GT1 --------->ICU4                 <---------ANAC46       ---- ---------ARR14(2)       ---------->DOF2 --------->YAB1                   <---------ANAC58   <------ZmHOX2a(1) <<<<<<ZML2     --------->ZAT6      <---------At5g28300          <---------TOE2(3)     --------->ALFIN1   tagaaccggagagataaaacactaatagaaaggaaaattacagtgataatgaatttaccttgagattagggttcttccttgttcgaagagtgtgaggaga  6153900                                                   --------->ATERF1(1)                                                   <-----------RAV1(2)                                                  ------>NtERF2                                                 <---------ANAC46                                                 --------->DEAR3(1)                                                --------->ATERF1(1)                                                <------NtERF2                                                --------->RRTF1(1)                                                --------->RAP2.3(1)                                               ------>NtERF2                                               <---------ATERF1(1)                                               <---------DEAR4(2)                                               <---------ERF1                                               <---------RAP2.6(1)                                               <---------RAP2.3(1)                                               <---------RRTF1(1)                                               <---------ORA47(2)                                               <---------DEAR3(2)                                              <---------RAP2.3(3)                                              <---------RRTF1(3)                                              <---------RRTF1(2)                                              <---------RAP2.3(2)                                              <---------DEAR3(1)                                              --------->ATERF1(2)                                              --------->ALFIN1                                              <---------ATERF1(2)                                             <---------ABI4(1)                                             --------->SPL7                                             --------->ATERF1(1)                                            ------>NtERF2                                            <---------ATERF1(1)                                           <---------DEAR3(1)                                          --------->ATERF1(1)                                         <---------LBD16                                        <---------TGA1a                                        ===================================bZIP_DOF            <-----                                        <---------O2                                     ------>MYB83                  ---------->DOF2     --------->CCA1(2)                                  -------->P             ---------->DOF2      <------ZmHOX2a(1)<------NtERF2                         ------>MYB46(1)             =====================================bZIP_DOF         <-----------GT1     --------->DEAR3(1)    ------------------------>ANAC81----------->ARR10            <----------DOF2       --------->ATERF1(1) ----->CCA1(2)    ================================bZIP_DOF <-----------GT1 *TSS      ------>NtERF2   taagaaaatgaaacaaaaagaaaagaaacagagagaggagagacgcgggcggcgcagggttttgccctttaactatatgctattcggagccaacctcgtc  6154000                     --------->ARR14(2)                     --------->ARR11(3)                     <---------GLK1(2)                                 <------------CBF                     <---------ARR11(3)                             --------->YAB1                     <---------ARR14(2)     <---------ICU4         <---------YAB1               <---------GLK1(1)            --------->ZAT6       --------->YAB1               --------->GLK1(1)   <---------GLK1(1)  <---------MYB46(3)          --------->DAG2      --------->MYB52(1)           --------->GLK1(1)<---------MYB52(1) <---------ICU4         <------ ----CCA1(2)<---------MYB46(3)---------->DOF2      <-------GAMYB<---------YAB1   ---------->DOF2   tcttaatctaacggtggatatcagatattccataaagaaatctccatcactaccgttggatgctcgatgataatattggcccataaggcccaaaactaaa  6154100                  <---------ZAT18              <-----------GT1          <---------AHL20(2)          --------->ATHB51          <---------ICU4          --------->AHL20(2)         <---------YAB1                   --------->YAB1       --------->YAB1                    --------->MYB46(3)       <---------ICU4                    <---------ATHB12       --------->ATHB51          <---------RAP2.6(3)       <--------HAHB4           <---------ANAC58                             <---------MYB46(3)       <--------ATHB1           --------->ANAC55(2)                      <----------DOF2      <---------ATHB51          <---------ANAC55(2)                   <---------ARR11(3)      --------->ICU4            <---------ANAC58                  --------->TOE1(3)            ------      <---------ATHB12<----------DOF2<---------ATHB12             --------->TOE2(3)   <---------GLK1(2)      --------->AHL20(2)        <---------ANAC46      <---------ANAC46--------->GLK1(2)        <----- ---ZAT14--------->ICU4 <----------DOF2--------->WOX13(1)         --------->YAB1   --------->HSFB2a(2)   ctgggccaataattatttactgggctcttttgtgccgtaatcaatcaccagtattagcgcgtagcaaaccataatcttttggttaccagaatttcaaaat  6154200                                             >>>>>>>>>>WRKY11                         --------->TOE2(3)                                             >>>>>>>>>>WRKY6                        --------->GLK1(2)                                            --------->WRKY38(1)             --------->ATHB12     <---------AHL20(2)   <---------ATHB12  --------->WRKY12               <---------YAB1   --------- --->ARR14(2)           --------->WOX13(1)  --------->WRKY45               <---------ATHB51--------->MYB46(3) ----ARR14(2)         <---------YAB1      <---------At4g35610  ---------->DOF2  --------->YAB1   <---   ccacaaatttatctaaatgagtttatcaatgaacagacttgtttagttgactaaaatttagagaagaaagctattcgattattgataatctcaacaacaa  6154300                                                                                  <---------ARR11(3)                                                                                  <---------ARR14(2)                                                                                  --------->ARR11(3)         <-----------GT1                                                          --------->AGP1      <---------ICU4                                                              --------->ARR14(2)     --------->AHL20(2)                                             ---------->DOF2 ------>ZmHOX2a(2) <-------TEIL           <---------ANAC58                   <---------ICU4        --------->GLK1(1) -->RAV1(1) ---------->DOF2                <---------GLK1(1)    <---------ANAC55(2)<------ZmHOX2a(2) ------------AtSPL8     <---------ANAC58   --------->GLK1(1)  --------->AHL20(2) <---------GLK1(1)   tggtacatttattacaaagtaagtttgcttaacttgaactgtatgaaatccatgaatacaaaaattacataaaagagatagagagatctgtatagaacca  6154400                     ------->MYC2                     <-------MYC3                     ------->MYC3                     <-------MYC2                    <---------TGA1a                    --------->O2                    <---------O2                    ================bZIP_DOF                                         ----------->RAV1(1)                    <---------ANAC46------->TEIL                                  --------->ANAC46                    --------->TGA1a <---------YAB1                               --------->ZAT14                    <---------ANAC55(2)                                          --------->ZAT18                    --------->ANAC55(2)    <----------DOF2                       <---------ZAT14                    ================bZIP_DOF                                     <---------ZAT18      --------->ANAC58   ---------->DOF2  <---------ANAC58           <---------At5g28300      --------->ANAC58 --------->REM1(2)  <---------ANAC58          <-----------GT1 --------->ANAC46   aaaatcaaacgcataaacattcacgtgtaaagagaatgaatattgctttgtgttttggaccttgttttttttactgcttcttctgcacaacattttccaa  6154500  Previous    Next  AGI:  At1g17880.1    Description:  nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative. similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to unknown [Populus trichocarpa] (GB:ABK94235.1); contains InterPro domain Nascent polypeptide-associated complex NAC (InterPro:IPR002715) Range:  from: 6152402    to: 6153975    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17890.1    Description:  GER2; catalytic. Identical to Putative GDP-L-fucose synthase 2 (GER2) [Arabidopsis Thaliana] (GB:Q9LMU0;GB:Q3EDA2;GB:Q3EDA3); similar to ATFX/GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1), GDP-L-fucose synthase [Arabidopsis thaliana] (TAIR:AT1G73250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66600.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 6154261    to: 6155745    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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