Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->YAB1      <---------YAB1 ----->RAP2.3(1) ---NtERF2 -----ATERF1(1) ---->LBD16 ->NtERF2 ----ATERF1(2) --->ATERF1(2)                                                         <---------ANAC58 --->RAP2.3(2)                                                         <---------ANAC46 --->DEAR3(1)                                                          <---------ANAC58 ----DEAR3(1)                                                  ------>ZmHOX2a(2) -->ORA47(2)                                                  <------ZmHOX2a(2) ---LBD16                                                     <---------RVE1(1) -->ERF1                 ----------->GT1                     --------->ARR14(3) -->RAP2.3(1)           --------->ALFIN1                     --------->ARR11(3) -->DEAR4(2)         --------->LBD16         <----------DOF2 <---------ARR11(3) -->ATERF1(1)        <---------MYB46(3)    *TSS  --------->TOE2(3)  <-----------RAV1(1) -->RAP2.6(1)       <---------ANAC58    <------NtERF2        --------->ARR14(2) --ATERF1(1)        <---------ANAC46  --------->ANAC58       <---------ARR14(2) --RAP2.3(1)        <---------ANAC58  --------->ANAC58       <---------ARR14(3)                 ----- -ATERF1(2)        <---------LBD16   --------->RAP2.6(3)    --------->RVE1(1)                   ----- >DEAR3(1) --------->ARR11(3)       --------->CCA1(2)    ---------->DOF2<---------SPL7  ------------>CBF >ATERF1(2)<---------ARR11(3)  ---------->DOF2   <----------DOF2<----------DOF2------>NtERF2  -------   gcgaaactctcattatcttctcgcgggtggagaaaaagagacggcatctttctttaatctaaagatctttatgtcgtatgaggccttaagcccaattcaa  6148900                                                      --------->AHL20(2)                                                      <---------AHL20(2)                                                    --------->AHL20(2)                                          <---------AHL20(1)                                        <       ---------->ID1                     --------->ARR11(3)            <---------ZAT14             < ---->ANAC58         --------->CCA1(2)    --------->AHL20(1)       <---------ANAC46      --------->AHL20(2) ---->ANAC58       --------->YAB1         <---------ARR11(3)    <----------DOF2          <---------AHL20(2) --->DOF2         <---------TOE2(3)    --------->AHL20(2)       --------->TOE2(3)       --------->AHL20(2)   gcccagtttgtcttatagctaagataagaagagattagtaagaaaatattccaaatttatatcaaactttagtgtatactattctggctatttaattcga  6149000                                                               --------->MYB46(3)         ----------->GT1                                   <---------YAB1   ---------->DOF2        <- <<<<<<<<<RAP2.2                  <-----------GT1        <-----------GT1  <---------ATHB12   <------- ---------YAB1       <---------ARR11(3)         --------->ARR14(2)      --------->WOX13(1) <--------- ---------TOE2(3)    --------->ARR11(3)         <---------ARR14(2)     <---------WRKY38(1) <---------   tttagattggattgttatattaagaccttatctaatttacatttagacagtatccagttttatcatccactagtcaatgaaagggacatttttcgtcagg  6149100                                                                 --------->ICU4                                                             ------->GAMYB                                                            --------->ANAC46                                                         <---------WRKY12             <---------O2                             <---------O2             >>>>>>>>>>HY5--------->WRKY38(1)         --------->bZIP60(2)             --------->TGA2(1)                        ===============MYC_MYB             <---------TGA2(1)                        --------->TGA1a--------->YAB1             --------->bZIP60(1)                      --------->ANAC46             <---------bZIP60(1)                      --------->ANAC55(1)             <---------bZIP60(2)                      --------->ANAC58             <---------ANAC46        --------->AHL20(1) --------->DOF5.7(2)             --------->O2 --------->WRKY12            <---------ANAC55(2)           <---------TGA2(2)         <---------AHL20(1)<-----------HVH21   ------>ZmHOX2a(2)    <----------DOF2 <---------AHL20(2)<---------DOF5.7(2) --------AtMYB61        ========================================bZIP_DOF ----RAV1(2)----------->STF1        --------->AHL20(2)--------->ANAC58                              - --TGA1   ----------->TGA1--------->WRKY45            --------->O2--------->YAB1 --------->AtMYB61 -- --HVH21  ----------->HVH21<---------WRKY18(1)      <---------ALFIN1<---------YAB1      --------->AHL20(2)   ggtgatcgaaatatgacgtcgtcaagctttgaccacaaatatataaacatatcaacacgtcaacgaaattatcatatgctcgaccacaaactaaataata  6149200                                                           <---------YAB1                                                  <---------MYB52(1)                                                  --------->ARR14(2)                           <----------DOF2   <---------ARR14(2)                       <-------TEIL          --------->ARR14(2)            --------->TOE2(3)    <----------DOF2  <---------ARR14(2)                          *TSS         <-----------GT1 ------->TEIL        <-----------GT1        --------->GLK1(2)   ------------>CBF -------->DEAR3(1)  <---------At4g35610     <---------CCA1(2)      <---------GLK1(1) <----------DOF2 ------->ANAC46     --------->At4g35610<----------DOF2<---------At4g35610        <---------CCA1(2)   caccgagcatttaaccaaaatcagatgcactttgactttgacttttgtatccgttctgcttattaatagaaatctgttttctcatctcttttcaattcat  6149300                                                                                      --------->ZAT14                                                                                     --------->ALFIN1                                                                                   <---------ANAC46                                                                                   --------->DEAR3(1)                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                <---------ALFIN1               ---------->DOF2                                                  --------->DEAR3(1)          <---------------AGL15                                                --------->MYB46(3)          --------------->AGL15                                                <---------MYB55(2)         <-----------------AGL2                   <---------ARR11(3)          --------->At4g35610----         ----------------->AGL3                   --------->ARR11(3)       <---------At4g35610-------         ----------------->AGL1                   --------->ARR14(2)<---------RAP2.6(3)       <------         ----------------->AGL2     --------->bZIP60(1)     ------>ZmHOX2a(1)--------->ANAC46--------         <-----------------AGL3     <---------bZIP60(1)  ------>ZmHOX2a(1) --------->At4g35610-------  ---------->DOF2           ------>ZmHOX2a(1)    <---------CCA1(2) --------->RAP2.6(2)--------->REM1(2)   actaaaaagtttccattaaaagaaaacttcctacaatgtcatcacttctctatatcttcctcctcttggccgtcttcatcagccaccgtggagtcaccac  6149400                                                                                               ------        <------NtERF2                                                                         -------       <-----------HVH21                                                                    ---------      --------->DEAR3(1)                                                                    <------NtERF2     --------->RAP2.3(1)                                                             <---------ANAC58     --------->ATERF1(1)                                                             <---------MYB46(3)    --------->At4g35610                                                              <---------ANAC46    <---------At4g35610                                                              <---------ANAC58    <---------ATERF1(1)                             <-----------HVH21               <---------DEAR3(1) --------->ZAT2                     --------->ARR11(3)                             ------>NtERF2 --------->At4g35610                <---------ARR11(3)          <---------ARR11(3) <------NtERF2 <---------At4g35610           ----------->GT1 <-----------RAV1(2)    <---------ANAC58    <---------DEAR3(1) ----->DEAR3(1)       <------ZmHOX2a(1)     ------>ZmHOX2a(1)   --------->ARR11(3)--------->DEAR3(1)- -->AtMYB61         <---------TOE2(3)       ----------->HVH21  --------->REM1(1) <---------RAP2.6(2)= ---ALFIN1          <---------TOE1(3)--------->RVE1(1)   --------->MYB46(3)     <---------LBD16<----- ->MYB46(3)  <-----------------AGL1 --------->GLK1(2) <---------WRKY12<---------ANAC58  --------->REM1(2) -->DEAR3(1) ----------------->AGL3 <-----------ARR10<------NtERF2    <---------ANAC46 --------->ALFIN1   cgaagcagccgtcgaaccagttaaggacatcaatggaaaatctctcctcacaggcgtcaactactacatcttgcctgtaattcgcggccgtggaggcgga  6149500                                    <---------TGA1a                                    --------->TGA1a                                    ===============================================MYC_MYB     <-----------HVH21   ----------->RAV1(2) >NtERF2               --------->ARR14(2)                                          <---------GLK1(2) -->ZAT18              <---------ARR14(2)                                    ----------->GT1 >ATERF1(1)   ---------->DOF2--------->PCF2 ------>ZmHOX2a(2)             ------>MYB46(1) ------->P    ================================bZIP_DOF                    ------>MYB83 =============================================MYC_MYB                     --------->MYB52(1)   ------ -NtERF2   --------->TOE2(3)<-----------HVH21                             -------->P    <-----------GT1   ctaaccatgtcaaacttaaagaccgaaacctgtcccacaagtgtgatccaagaccaatttgaagtctctcaaggcctaccggttaaattctcaccatatg  6149600                       --------->At4g35610            ------>MYB46(1)          --------->AtMYB61         --------->HSFB2a(1)         --------->HSFC1(2)                                                               <<<<<<<<<<<         --------->MYB46(3)                                 --------->LBD16            --------->ANAC58         <---------HSFB2a(1)                            <---------AGP1                 --------->ANAC58         <---------HSFC1(2)             <---------GLK1(2) ------>ZmHOX2a(2)            --------->ANAC46  <---------ATHB12     <---------At4g35610              <---------ARR14(2)          <----------ID1 <- ----->HVH21------>MYB83           --------->TOE2(3)    --------->ARR14(2)     --------->ANAC46 <----   acaaatcaagaaccatccctgtctcaactgatgtaaacatcaaattctctccaacttcgatctgggaattagccaatttcgacgagacgacgaaacaatg  6149700                              --------->LBD16                          <---------ARR14(2)                          --------->ARR14(2)                          --------->GLK1(1)                                 ---------->DOF2                          <---------GLK1(1)                    <---------ETT(2)                         <---------GLK1(1)                    <------ZmHOX2a(2)                    --                         --------->GLK1(1)----------->GT1    --------->ARR14(2)           <----------                <-------GAMYB<---------LBD16 <---------MYB46(3)<----------ID1            ============ <<<<<<LFY     <---------ANAC46        --------->MYB52(1)    <---------ARR14(2)          <------ZmHOX2a(2) ------TEIL    <---------ANAC58 <-----------HVH21            <---------ARR11(3)         --------->ARR11(3) -----MYB46(3) <---------ANAC58--------->LBD16               --------->ARR11(3)         <---------ARR11(3)   gttcatttcaacttgtggcgttgaagggaatcccggtcagaaaacggttgataactggttcaagatcgacaaatttgaaaaagattacaagatcaggttt  6149800  Previous    Next  AGI:  At1g17850.1    Description:  similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48450.1); contains InterPro domain Rhodanese-like (InterPro:IPR001763) Range:  from: 6146067    to: 6148843    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17860.1    Description:  trypsin and protease inhibitor family protein / Kunitz family protein. similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65022.1); contains InterPro domain Kunitz inhibitor ST1-like (InterPro:IPR011065); contains InterPro domain Proteinase inhibitor I3, Kunitz legume; (InterPro:IPR002160) Range:  from: 6149294    to: 6150031    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version