Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <----------DOF2         --------->ARR11(3)         <---------ARR11(3)         <---------AHL20(1)        --------->CCA1(1)        --------->RVE1(1)    <---------ARR11(3)                                                                           ----    --------->ARR11(3)                                                           <------ZmHOX2a(1) --------->DOF2                     <---------GLK1(1)                            ====================HOX2a_HOX2a -------HSFB2a(2)                --------->LBD16 --------->ANAC46           --------->DAG2    <------ZmHOX2a(2) ------>HSFB2a(2)     <----------ID1--------->GLK1(1)                      ---------->DOF2   <-------   ctaaaagataatatctttagagaaggaacaaaacccagaattcttctctctaagaaacaaaacccttaagaaactcaaaaagaggaattaagagcgatca  6134900                                     --------->AHL20(2)                                     <---------AHL20(2)                             ------>ZmHOX2a(2)    <-------GAMYB                ==============================HOX2a_HOX2a          =================   --------->MYB52(2)       <---------HSFB2a(2)                <---------ANAC46    <------ZmHOX2a(2)   <---------MYB46(3)   --------->ARR14(2)               <XXXXXXXXXXXXXXXXXXXMIR866-3P <---------MYB52(1)     <---------GLK1(2)       <---------WOX13(1)                 ================== ------->RAV1(2)        <---------ARR14(2) --------->TOE2(3) --------->CCA1(2)    --------->ARR11(3) ----HVH21     --------->GLK1(1) <------ZmHOX2a(1)      <------ZmHOX2a(2)         <---------ARR11(3)   cctgtttgttgatacagaaatcgatggattcgcgaggattaaaatccttgatagatggatcagagacgggttttgactcaatacgatctctcttgcgatt  6135000                                  --------->At4g35610     --------->LBD16                                <-----------RAV1(2)       <---------TOE1(2)                  ---------->DOF2 <---------LBD16   <---------GLK1(1)               <---------ANAC55(2)<---------At4g35610    <---------LBD16                        -----              <-------TEIL  <---------At4g35610     --------->ARR14(2)                          -----             --------->CCA1(2)<-----------HVH21     <---------ARR14(2)                        -------         <------ZmHOX2a(1)  --------->At4g35610     --------->GLK1(1)                       <--------        --------->LBD16 --------->ANAC46       <---------ANAC46                    --------->ANAC58      <-----------RAV1(2)--------->LBD16      <------NtERF2 <------ZmHOX2a(1)      --------->ANAC46    <----------DOF2    <---------LBD16<---------ARR14(2)<---------LBD16            --------->ANAC58 ===============HOX2a_HOX2a <---------ZAT2    <---------------------WRI1   <------ZmHOX2a(1)--------- ===============HOX2a_HOX2a --------->ZAT2  <---------DEAR3(1)       --------->LBD16      -----------   caatcgcttcaggagatacataaatcccgcagcttcagcggataagacggcgagaattcccaggaaaaatccagagaggaacaccacgaaacccacaaac  6135100         <---------HSFB2a(2)                                                           <---------ANAC58         --------->ANAC46                                                              <---------ANAC58         --------->HSFB2a(2)                                                           <---------ANAC46        <---------LBD16              <---------ANAC46                            <-------TEIL       <---------LBD16               <---------ANAC58                           --------->CCA1(2)   <---------ARR11(3)                <---------ANAC58                          <---------GLK1(2)   --------->ARR11(3)             <---------DEAR3(1)                           --------->ARR11(1) ---->ANAC58                   <-----------RAV1(1)                             <---------ARR14(2) ---->ANAC58           --------->DEAR3(2)<------ZmHOX2a(1)                     --------->ARR14(2) -->MYB52(1)           <------------AtMYB77                             <------ZmHOX2a(1) -MYB52(2)        ----------->HVH21 <------NtERF2            --------->ANAC58 <---------HSFB2a(1) >MYB46(3)--------->LBD16    ------>ZmHOX2a(1) --------->ALFIN1  ---------->DOF2--------->ARR14(1) >RAV1(1)--------->LBD16 <-----------HVH21 <---------GLK1(1) --------->ANAC58----------->ARR10   gaaaacatctcccggaagctctgaaaccgtcctctggtggcgaggaaatgtggtgagagaaggaagcaaaaggaggagaaagattcgaggcgttgaagtt  6135200                                                                                    --------->TOE2(3)                                 --------->YAB1                               <---------HSFB2a(2)                      <------ZmHOX2a(1)                                       --------->HSFB2a(2)         <---------ZAT14  ----------->GT1                          <---------YAB1<---------ARR14(2)         --------->REM1(2)--------->ANAC58                         --------->ICU4--------->ARR14(2)         --------->ZAT14  --------->ANAC58            <---------LBD16        <---------LBD16   <-----------HVH21 <----------ID1        <------ZmHOX2a(1)       <---------ATHB12 --------->TOE1(3)   gttcatgtcagtgtagaagaacaaggacaagtcaaaaataagagaggaagagaaactctgggattagccatcattcatctctggaacctcaattccaact  6135300                                                         --------->WOX13(1)                                                    <---------MYB46(3)        <---------ARR11(3)                        <---------MYB52(1)        --------->ARR11(3)                      <---------ZAT6        <---------AHL20(1)                      <-----------RAV1(1)        --------->AHL20(1)                  <---------ETT(2)     ------>MYB46(1)                   <---------At5g28300     ------>MYB83                     <-----------GT1  ------------>CBF                            --   ------->GAMYB                  --------->AHL20(2)<------MYB83                                   <-  --------->MYB46(3)              <---------AHL20(2)<------MYB46(1)                                <- ------>MYB46(1)           <---------TOE2(3)--------->ETT(2)                                       <- -------->P               <-----------GT1   --------->ZAT14 --------->AHL20(2)                     <- ------>MYB83      ------>ZmHOX2a(1)  *TSS  <---------ZAT14 --------->YAB1             --------->AHL20(2)   tccaaccaaatattttttgtcctaagattaacatttttaattactgtctactgttggttcaattaaaaactccattacatagagaaattttaaatcaaat  6135400          <----------DOF2       --------->GLK1(2)     <---------AHL20(2)                                              --------->ARR11(3) --------->GT1                                                       <---------ARR11(3)<---------WRKY45 --------ANAC46                <----------DOF2                       --------->GLK1(2) <---------WRKY12 --------ANAC58               <---------DAG2               <------NtERF2               <---------WRKY38(1) --------ANAC55(2) <---------AHL20(2)                 <---------TOE1(3)               --------->WRKY18(1) --------ANAC58   <---------AHL20(2)<----------DOF2   <---------TOE2(3)  ----------->GT1        <----   ttcgtaaataatcttttttttttaatgggttaccttttctttgtttttgcagaattaaggtgccaaaacaaaatctagtatatatgtggtcaaagtatat  6135500                                            <------MYB46(1)                                            <------MYB83                                           --------->MYB59                                    <-----------------AGL3                    --------->YAB1     --------------->AGL15          <-----------------AGL2            ----------->GT1   <------ZmHOX2a(1)     <---------------AGL15         ----------->GT1              --------->At5g28300   <---------TOE2(3)     =====================================================================MADS_MADS   <---------ANAC55(2)  <-----------GT1    ----------->GT1======================================MADS_MADS--------->ICU4 -----YAB1  ----------->GT1     ---------->DOF2         ----------------->AG  ----------->GT1       <   gattttacaaaatatagataatatggataatttagaaagctaaatttggttcaaaataaccaaaacagtgaatggtataatcgtaattaaggaacaagtt  6135600                                                                                           <--------ATHB1                                                                                           <---------ICU4                                                                                           --------->AHL20(2)                                                                                           <---------AHL20(1)                                                                                           <---------AHL20(2)                       --------->ANAC58                                                    --------->YAB1                       --------->ANAC58           <----------DOF2                         --------->ICU4        <---------ANAC46         <---------AHL20(2)                                 ----------->GT1  <---------MYB46(3)   --------->ANAC46        <---------ARR11(3)                  --------->DAG2  --------->LBD16   --------->MYB46(3)   ------>ZmHOX2a(2)                        ---------->DOF2 <---------ANAC46 --------->ARR14(2)   --------->ARR11(3)      ====================================== ---------LBD16   <---------ARR14(2)   <---------ARR11(3)      <-----------------AGL3 --------->AHL20(2)   ttcgcgggtgatgtatggcgaaaccactcaactatatatatgatctctagttctttttgtctaaaacattttttggtaccagagaaaagttaataatttt  6135700                                            --------->MYB46(3)                              --------->At4g35610    <---------------AGL15                              <---------At4g35610    --------------->AGL15                 <---------WRKY18(1)       ------->TEIL  ---------->DOF2                --------->WRKY38(1)     <---------MYB52(2)                                ---------->DOF2 <---------TOE1(3)        --------------------->WRI1<-----------------AGL1  --------->CCA1(2) <---------TOE2(3)    <----------DOF2<----------ID1 ----------------->AGL1 --------->ARR14(2) --------->MYB59--------->WRKY12<----------DOF2     <---------------AGL15  <---------ARR14(2) ===================================================================MADS_MADS <---------YAB1   gtttaggtttagcaaatgttgaccctttcttcggctgtaacgacgaaccaatttacataaaaaggaaaacattgacagatatgtttggacaacaaagtta  6135800  Previous    Next  AGI:  At1g17820.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62030.1); contains InterPro domain Pleckstrin-like (InterPro:IPR001849) Range:  from: 6131530    to: 6135338    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17830.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45300.1); contains InterPro domain Protein of unknown function DUF789 (InterPro:IPR008507) Range:  from: 6135796    to: 6138425    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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