Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------ATERF1(1)                    --------->ATERF1(2)                    --------->RAP2.3(2)                    --------->RAP2.6(2)             <---------ARR14(2)             --------->ARR14(2) <-----------GT1         xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)      <---------HSFB2a(1)       ---------->ID1      xxxxxxxxxxxxxxxx>smallRNA(s)      --------->HSFB2a(1)<---------TOE1(2)     xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------TOE2(2)--------->ATERF1(1)     <---------TOE1(2)<------NtERF2    <-----------RAV1(2)--------->DEAR3(1)           <---------DAG2    xxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->TOE2(3)    xxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->TOE1(3)   xxxxxxxxxxxxxxxx>smallRNA(s)<-----------GT1   <-----------GT1  --------->ANAC46  <---------ATERF1(2)    <---------ANAC58 <---------LBD16    --------->DEAR3(1)     <---------ANAC58 --------->LBD16   --------->RAP2.3(1)     <---------ANAC46                <-----------RAV1(2) <------NtERF2   ------>ZmHOX2a(1)        ---------->ID1        --------->REM1(1)                  <- --------LBD16 ----------->RAV1(2)       <-----------GT1      ------>ZmHOX2a(1) ------>NtERF2      -- ----DOF2<-------TEIL------>NtERF2 <----------DOF2  <---------MYB59 --------->AHL20(2)       <-------   gcccgcgcaggttcgaatcctgccgcctacgtttttccttttttttcgtatttaccttattttcctacattttaaaaccaggggccataacattttttcc  6038900                                     --------->TOE2(3)                                   --------->ICU4                           <---------ARR11(3)                                         <----------DOF2 ------MYC3                --------->GLK1(2)                --------->YAB1      <---------ICU4 ----->MYC3                --------->ARR14(2)     --------->YAB1            --------->MYB46(3) ----GT1             --------->YAB1--------->GLK1(2)--------->AHL20(2)    --------->YAB1     <-------   acatgtactataacatttgtttatcacaaaatctgaaattcttaattaacaaaaataaacaatggtgatgccctaataacaaacatttctttcttctttt  6039000                           <---------WOX13(1)                          <---------ANAC58                                                    -------                  <----------DOF2    ------->TEIL                                   --------------->AGL15               <-----------GT1    --------->AtLEC2                                  <---------------AGL15           <----------DOF2<---------ANAC58                               <---------YAB1 <---------ATHB12           <---------DAG2--------->ATHB12                          <---------TOE2(3)------>ZmHOX2a(1) ---DOF2 ------->TEIL   <---------YAB1     ---------->DOF2     --------->TOE2(3)   --------->TOE2(3)   tttttgctacgaactttttacttttgttgattgttcatgcatttacaaagacaaaatccaaagtttcttaatgttatgaaaaattcctaaatcaagaagt  6039100                                            ------>NtERF2                  --------->YAB1                                            <---------RAP2.6(3)         ------>MYB46(1)                                            --------->ORA47(1)          ------>MYB83                                           <---------ANAC58           --------->MYB46(3)                                           <---------ANAC46          --------->TCP15(2)                                           <---------ANAC58         --------->PCF2                <-------TEIL       <---------At5g28300              <---------TCP20   --------->At4g35610  --------->ALFIN1 ------>NtERF2              <---------TCP15(1) ---->GT1      <--------P         <-----------GT1                  <---------PCF2   taaacggctgagaagaggttgatcaagtggaacaattcaccgatgccgtccattttgaagctagcactgggacccactagtaatctgtatcagacaagag  6039200                                          ------->GAMYB                                         --------->ANAC46                                  --------->GLK1(1)                                  <---------GLK1(1)                                  --------->ZAT2  <----------DOF2                                  --------->At4g35610                                  <---------ZAT2 <---------DAG2                                  <---------At4g35610                                           -----                        --------->HSFB2a(2)   --------->ANAC58                                  *TSS                    <---------ANAC58     --------->ANAC58                                       <----                    <---------ANAC58     --------->ANAC58                                       <----            --------->LBD16      <---------ARR14(2)                     --------->LBD16        ------          --------->ANAC46       --------->ARR14(2)                    --------->DEAR3(1)      ------      <-----------GT1   <---------HSFB2a(2)   --------->ANAC58      <---------ALFIN1         <-------   acaaaataaaaccccccaaatggcttctccaagcggagctccaacgaaacgcctttttttttgaaactctccaccgcgataagagagagagattaccaaa  6039300     --------->LBD16            ------>ZmHOX2a(1)   <---------LBD16    --------->GLK1(1)   ----------->GT1 ---->ARR14(2)        <----------DOF2   <---------LBD16 -----ARR14(2)       <---------ANAC58--------->GLK1(1) -----GLK1(2)        <---------ANAC58<---------GLK1(1)     <----------DOF2 >MYB83         --------->DAG2  --------->LBD16---------->DOF2  --------->ZAT6               <------- >MYB46(1)     ---------->DOF2----------->RAV1(2)   --------->ATHB12                      <---------WOX13(1) --MYB59  ----------->GT1  <----------DOF2--------->LBD16  <---------DAG2               --------->ATHB12   ttctcaccggagaagaaaaaagggctttcctttcctgagatttccggtgaaaagtcattgactttatcactctcaagtctctccacaagttgattgattc  6039400                                                           <---------ARR11(3)             --------->ARR11(3)                                                          <---------CCA1(2)              <---------RVE1(1)                                                         --------->ARR11(3)              <---------GLK1(1)                                                         <---------ARR11(3)              --------->RVE1(1)                      <----------DOF2                    --------->AHL20(1)              --------->GLK1(1)             --------->At4g35610                         <---------AHL20(1)             <---------ARR11(3)             <---------At4g35610                        --------->AHL20(2)  <---------YAB1<---------ARR11(3)             ----------->RAV1(2)             --------->At5g28300         <---------AHL20(2) --GLK1(2)------>ZmHOX2a(1)                 ----------->GT1--------->ARR11(3)           --------->ARR11(3)   tgctctaatctcctcatctggggtctttcccctcttgctattcaaatggtaaattcaaatatatctctataccattttatgtttctaagagatatctcgg  6039500                                                            <---------REM1(1)                                                            <---------MYB46(3)<-----------GT1                                                            <-----------RAV1(1)                                                    <---------DOF5.7(2)     <----------DOF2                                                  <---------MYB52(1)        <---------DAG2                                                  --------->DOF5.7(2)      <---------ANAC58                                                 --------->TOE2(3) <---------MYB52(1)                                                <---------ANAC46 <---------ANAC58              ------                                           --------->MYB52(2)    <---------ANAC46   <---------DAG2                                     <---------ANAC46 <-----------RAV1(1)  <---------ANAC58    ======                                     <---------ANAC58<---------TOE2(3) <---------ANAC58      --------               <---------AHL20(2)    <---------ANAC58<---------TOE1(3) <---------ANAC58      <------- <----------DOF2                     --------------------->WRI1  <---------ANAC58   <----------DOF2   tctctttgctcaactgtttatttgaaaactgaaaaccttgcttgtttgtttcgttaatgttgttgttgcgtttgcttgctttacccctttttgtttcctg  6039600                                                                                           <---------ANAC58                                                                                           <---------AtLEC2                                                                                           <---------ANAC46                                                                                <---------ANAC58                                <-----------GT1                                 <---------ANAC58                          <---------MYB46(3)                                   --------->HSFC1(2)                         <--------P                                            <---------HSFC1(2)     --------->ANAC58  <---------MYB46(3)                                 <---------HSFC1(1)       --     --------->ANAC58 <---------YAB1              <<<<<<<<<<MYB80         --------->HSFC1(1)       <- >ZmHOX2a(1)          <---------TOE2(3)         <---------AtMYB61         --------->HSFB2a(2)     --- =========================HOX2a_HOX2a   ---------->DOF2                   >>>>>>>ZML2      <---------ANAC58 --------->AGL1    ------>ZmHOX2a(2)  <---------HSFB2a(2)                 <---------HSFB2a(2)     --- --ANAC46        <---------ARR11(3)   --------->HSFB2a(2)              --------->AGP1  <----------DOF2   tatggagacgctaattcttgatctatggttgtttttacttctgaaaggttttggtttgactatgtctagctcagttctagaagcttgctctttgcctgaa  6039700              --------->AHL20(2)          --------->AHL20(2)  --------->ARR11(3)           --------->At5g28300  <---------ARR11(3)          ----------->GT1 ------->AHL20(2)        ---------->DOF2 --------AHL20(2)     ----------------->AG                ------->TEIL ------>AHL20(2)      ----------------->AGL1  <---------ANAC58        <----------DOF2         <------ ------>YAB1  <---------AHL20(2)              <---------ANAC58  --------->ZAT14      ------->TEIL ---   ttaaaatctcgtttatataattttgcctaaagctgtaaaatagatgttatgtgccccttgaacctgtaaactcttttagaggcaatgtatgtttttgatg  6039800  Previous    Next  AGI:  At1g17570.1    Description:  pre-tRNA. tRNA-Ser (anticodon: AGA) Range:  from: 6038750    to: 6038831    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g17580.1    Description:  MYA1 (ARABIDOPSIS MYOSIN); motor/ protein binding. similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45678.1); similar to myosin XI-K [Nicotiana benthamiana] (GB:ABJ53199.1); similar to myosin XI [Nicotiana tabacum] (GB:BAD72949.1); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contain Range:  from: 6039296    to: 6049549    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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