Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->GLK1(2)                             --------->ARR11(3)            <-----------GT1                     <-----                             <---------GLK1(2)      --------->ANAC58                <---------ANAC58                             <---------ARR11(3)     --------->ANAC58          <---------MYB52(1)<----                           <---------ATHB12      <---------SPL7              <-------GAMYB     ------                      --------->ANAC58    <---------ARR14(2)        <-----------GT1 <---------ANAC46                      --------->ANAC58    --------->ARR14(2)       <-----------GT1  <---------ANAC58   tgcaactcaaatacaaaaaatcgaacccaaagattcttgaactaaatccgacgtactcaattaacaaattttccattcccgttgtgccttgaacttgata  6027000    <---------GLK1(1)    --------->GLK1(1)          ---------->DOF2           --------->AHL20(2) <---------TOE2(3)           --------->AHL20(2)   ----------->GT1                               ----- <---------TOE1(3)     ------->GAMYB----------->GT1----------->GT1                              <---- ----YAB1           ----------->RAV1(1)   <---------AHL20(2)                                 <------- -----ICU4         --------->MYB46(3)     --------->AHL20(2)                                 <------- --->ICU4  <---------ATHB12  --------->YAB1  ---------->DOF2        <---------AtMYB61        --------   attagggtttccaatgtttcaacaacagcaataaaaagaggtaattaaaaagaagataaataaaaaccttgaggtcgatgttagagcgactagagagctg  6027100                        --------->KAN4(2)                       --------->KAN4(1)                                                --------->ORA47(1)                       <---------KAN4(1)                                                ------>NtERF2                       <---------HSFB2a(1)                                             --------->RAP2.6(2)                      ---------->TaMYB80                                               --------->RAP2.3(2)                      <---------KAN4(2)                                                --------->DEAR3(1)                  <------NtERF2                                                       --------->ORA47(2)              ------>ZmHOX2a(2)                                      --------->ANAC58 --------->RAP2.3(1)           <------ZmHOX2a(1)                                         --------->ANAC58--------->LBD16 <---------ZAT2  --------->LBD16                                   --------->MYB52(1)<---------ATERF1(1) --------->At4g35610  --------->ARR14(2)                      <---------ANAC46       ------>NtERF2 <---------At4g35610  <---------ARR14(2)                    --------->LBD16         --------->ANAC46 ---->At4g35610 <---------ANAC46       --------->LBD16      ------>NtERF2   ------>ZmHOX2a(1) -----At4g35610<---------LBD16        --------->HSFB2a(2)  <---------DEAR3(1)       --------->DEAR3(1) --ZAT2 <---------LBD16--------->HSFB2a(1)                <---------LBD16------>NtERF2--------->ATERF1(1) --At4g35610--------->ARR14(2)    <----------DOF2    ------>ZmHOX2a(1)  --------->DEAR3(1)        <-- ->At4g35610<---------ARR14(2) <---------ALFIN1     <---------MYB59<-----------GT1------>ZmHOX2a(1) -   ctcagctaattcaggatcgcggagaatattcttccactttccagggccatgcttcctaactccggcgagtaacgcctcctcttcctccgccgtccatttg  6027200              <-----------ARR10                              <-------TEIL             <---------CCA1(2)                            <---------ZAT2                     <-------        <-----------GT1                                   --------->ZAT2                   ----------      <---------GLK1(1)                                  ------>MYB83                      ----------      --------->GLK1(1)                                  ------>MYB46(1)               ----------->HVH21   <---------YAB1            <-----------GT1           <---------MYB59               ----------->GT1 -------At4g35610          <---------YAB1         <----------DOF2                --------->WOX13(1) -------->GLK1(2)  --------->ANAC46           <---------MYB52(1)---------->ID1<-----------HVH21   agcttctgatttcccatctctacgcttctattatcgactcttctctccgttcctttacctagcttcgtcgtttttgaatatgtcaatcggtgacaaagaa  6027300                 ------>NtERF2                 <---------DEAR3(2)                <---------DEAR3(1)              <-----------HVH21          <---------ARR14(2)          --------->ARR14(2)          <---------GLK1(2)        --------->DEAR3(1)       <------NtERF2      --------->ABI4(1)      ------>NtERF2  --------->LBD16      --------->LBD16<------NtERF2     <---------DEAR3(1)     --------->DEAR3(1)     --------->RAP2.3(3)     <---------ATERF1(2)     --------->RAP2.3(2)     --------->ATERF1(2)    --------->RAP2.3(1)                                                                    <---------    --------->DEAR4(2)                                                                  --------->GLK1(2)    --------->ERF1<------NtERF2                                               *TSS      <---------ARR11(3)    --------->ATERF1(1)     ---------->ID1                                   <---------ARR14(2)  <---   <---------ATERF1(1)  <---------ANAC58     <---------ANAC58    --------->HSFC1(2)     --------->ARR11(3) --MYB52(2) <-------TEIL<---------ANAC58     <---------ANAC46    <---------HSFC1(2) --------->YAB1 >DOF2<---------ATERF1(1)   ---------->ARF1  <---------ANAC58 ---------->DOF2--------->ARR14(2)------ ----------->WRI1<---------SPL7 --------->LBD16         <---------AHL20(2) XXXXXXXXXXXXXXXXXXX>MIR158A   cgtctcgccgccgattcgtcggccgggcttgtcccccaaaaactattgcttctattttttaattcaaagcttcttcccaaatccaaacaaaatctttttc  6027400                                                                                 <-----------HVH21                                                     ------------>CBF            --------->TOE2(3)                                                <------ZmHOX2a(1)               <----------ID1                                               <------MYB46(1)           ----------->GT1                                          <---------YAB1          <---------------AGL15                                          <---------TOE1(3)       --------------->AGL15   <---------------AGL15                  <---------TOE2(3)      ----------------->AGL1  <---------YAB1   <----------DOF2                    <-------GAMYB <-----------GT1      <---------ANAC55(2)   --------------->AGL15             --------->MYB111(2)         ----------------->AGL3 --------->TOE2(3)   ================================================================================MADS_MADS -DOF2                               <---------MYB46(3)     --------------->AtSPL3     --------->YAB1 -------DOF2                        <--------P <------MYB83 --------------->AtSPL8     <---------ICU4 ---->ID1 --------->ANAC55(2)---------->DOF2 <--------P     <---------------AtSPL8    <---------ATHB12   tttttcttttatatgtaatgagattaatctacaaagaggttgttatggtaggatttacaatttaagtaccatattatgtaaaacgtcaaacattataggg  6027500                            --------->ARR11(3)                        ---------->DOF2                      <------NtERF2                     <---------HSFB2a(2)                --------->DAG2                                 <----------ID1                      --               ---------->DOF2           <---------ATHB51      ----------->GT1                    ---            <---------ANAC55(2)   ----------->GT1   --------->AHL20(2)                 --------->GLK1(2)            ----------->GT1 <---------ARR11(3)--------->YAB1--------->DAG2             <---------ARR11(3)    ----------->GT1 <---------LBD16      <---------AHL20(2)--------->MYB52(1)          --------->ARR11(3)   tctaaaatgaaaaaacgtaaagtcgggaaagaacttgggttaaattattcaaaataaaacataaggggtcaaattcgaattagtcacaaaatcttacata  6027600                                                                                 <------NtERF2                                                                               --------->DEAR3(1)                                                                               <---------ALFIN1                                                                              <------NtERF2                                                                             ------>NtERF2                                       --------->ZAT2                        <---------ATERF1(1)                                       --------->At4g35610                  --------->DEAR3(1)                        *TSS   --------->ANAC46                           <---------ATERF1(1)                       --------------->AtSPL3                             <-----------HVH21                       --------------->AtSPL8                      <----------DOF2      ------>ZmHOX2a(1)              <----------DOF2  --------->bZIP60(2)             <---------CCA1(2)------>NtERF2             <---------DAG2  <---------ALFIN1               <---------MYB52(1)--------->ATERF1(1) ------------------->WRI1  --------->SPL7                  <-----------HVH21<---------ETT(2) ------>TOE2(3)   <---------YAB1  --------->YAB1    ----------->HVH21    --------->ANAC46   ccctaaaacatttcgcctttcttattctgtaccacatcataagctggaggttctctgactccgtcgtctctttctccgtcgccaccgttcctaaaacgtc  6027700                                                                                  -------->P                                                                                  --------->MYB52(1)                                         ------->TEIL                      --------->HSFB2a(2)                                         <---------ARR14(2)                <---------HSFB2a(2)                                   <------ZmHOX2a(2)                     -------->P                                   <---------ATHB12                    ------>ZmHOX2a(1)                            <---------ZAT2                             ==============================HOX2a_HOX2a                            --------->At4g35610                       --------->TOE2(3)                        --------->YAB1<---------YAB1                 <---------ICU4                     --------->WOX13(1)  --------->ARR14(2)         ------>MYB83--------->MYB46(3)                   <------ZmHOX2a(2)--------->YAB1                  ------>MYB46(1)               <--       --------------->AGL15<---------At4g35610                <-----------GT1--------->ARR14(2) <---       <---------------AGL15--------->ZAT2  --------->TOE1(2)<----------DOF2  --------->AGP1  <------ZmHOX2a(2)   tcccgtcttcttctaatggcgatcaatcgtagctccgatcatgaatccgacgaaaacacccgtctttaccatccttaccagaactaccaggtcccgatca  6027800                                             --------->ANAC46                                             --------->ANAC55(1)                                             --------->ANAC55(2)                                             --------->ANAC58                                             --------->ANAC58                                 --------->ARR14(2)                     --------->YAB1                              --------->ANAC46                          --------->ATHB12        <----                              <---------HSFB2a(2)                      <------ZmHOX2a(2)   <---------                <---------HSFC1(2)        <---------REM1(2)      <---------ANAC46   --------->ARR11(3)                --------->HSFC1(2)     <---------------AGL15     --------->DEAR3(1) <-----------ARR10      <---------ARR11(3)      --------->HSFB2a(2)               --------->At4g35610 <---------ARR11(3)      --------->GLK1(2)      <---------LBD16<---------LBD16 --------->ANAC58        --------->GLK1(2) ---------ARR10--------->ANAC58  <---------GLK1(2)          --------->ANAC58   ----------->GT1  ----- ------CCA1(2) --------->ANAC58--------->LBD16              --------->ANAC46 ----------->GT1    <----   aatctcagtatctatacaagcttccgacttctccggaatttctattcacggaagagtctctcaagcagcgtcgatcatggggagaaaatctcactttcta  6027900  Previous    Next  AGI:  At1g17520.1    Description:  DNA-binding protein, putative. similar to DNA-binding family protein / histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G72740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65323.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro dom Range:  from: 6024629    to: 6027378    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17530.1    Description:  ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); P-P-bond-hydrolysis-driven protein transmembrane transporter. similar to ATTIM23-2 (Arabidopsis thaliana translocase inner membrane subunit 23-2), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G72750.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70489.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim23; (InterPro:IPR005681) Range:  from: 6027624    to: 6028499    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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