Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------WOX13(1)                                   -------->HAHB4                                    <---------AHL20(2)                                      ---------              --------->YAB1       <---------WOX13(1)                                      <---------YAB1      --------->YAB1   <---------ARR14(2)      ---------->DOF2                --------->ARR11(3)     <---------YAB1    --------->ARR14(2)   <------ZmHOX2a(1)                 <---------ARR11(3)   --------->YAB1      <---------GLK1(2)  <---------TOE2(3)       <-----------GT1          --------->ICU4 --->DOF2    <-------TEIL<-------TEIL--------->ATHB12 ---------->DOF2   ----------->GT1    <---------ATHB12   gttgattatcatagattcatattcagattcagagctaattgattgaggagaaaggagaaaggagagttttacaaatgtaatatctctattgaaatgatta  5998400                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                     --------->YAB1                                               <---------ARR14(2)                    --------->ATHB12                                               <---------GLK1(2)                     <---------ICU4                                               --------->ARR14(2)          <---------ZAT14<---------ANAC46         --------->ANAC46                   <---------TOE1(3)        <---------AtMYB61    <---------AtLEC2         --------->ANAC58                   <---------TOE2(3)<---------ANAC58       <---------YAB1  <   <----------DOF2    ---------->DOF2   <----------DOF2      <---------ANAC58       --------->ICU4  - >ATHB12 --------->ANAC58     <-----------GT1 <------ZmHOX2a(1)<-----------GT1 <---------ZAT6       <   agagtctttacaagaaacttgttgtaaagtttacacatttcggtttaaggattcttctgtttttcttacctttggtctccagtgttatcattgcatgttt  5998500                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                     <---------ARR14(2)         -----                                                                     --------->ARR14(2)         -----                                                                  <---------ANAC55(2)        <------NtERF2                                                                  --------->ANAC55(2)      --------->ANAC46             <---------ANAC58                                     --------->ANAC55(1)      --------->ANAC58             <---------ANAC58      --------->ZAT14                --------->ANAC58         --------->ANAC58 <-------GAMYB                     <---------ZAT18           --------->ANAC58             --------->RAP2.6(3) -----------RAV1(1)                <---------ZAT14           --------->ANAC46       <---------ZAT6 -------->MYB52(2)                 --------->ZAT18           --------->ANAC58  ------>ZmHOX2a(1)----- ---------MYB46(3)        <-----------GT1       --------->ZAT6    --------->ANAC58<---------ANAC46  <   gtttgttgttgtatagcctgtgcgagttttacatgagtgcagtattttgaactctagactaagacgacacgtattcgaatcctgaagtgtaagacggcac  5998600                                                                             -------->P                                                                      <---------ANAC46                                                                      <---------TGA1a                                                                      >>>>>>>>>>AtbZIP1<---------HSFC1(2)                                                                      <---------ANAC58 <---------HSFB2a(1)                                                                      ================MYC_MYB                                                                      --------->TGA1a  --------->ZAT2                                                                      <---------bZIP60(1)           --------->ANAC58                                         ------>NtERF2      --------->HSFC1(2)           --------->ANAC46                                         <---------TGA2(2)  <---------At4g35610           --------->ANAC58                                        --------->WRKY12    --------->At4g35610        --------->ZAT14                                            ----------->TGA1    --------->HSFB2a(1)        <---------ZAT14                                          <---------At4g35610 ================        --------->ZAT18                             <---------CCA1(1) <---------ANAC58<-----------ARR10        <---------ZAT18                             <---------RVE1(1) --------->O2<---------HSFB2a(2)    <---------AtMYB61                              <---------ARR14(2) --------->bZIP60(1)     -------    --------->ALFIN1   --------->ANAC58            --------->ARR14(2) <---------bZIP60(2)    --------    <-----------RAV1(1)--------->ANAC58            <---------ARR11(3) <---------O2--------->HSFB2a(2) ---->ANAC46          --------->SPL7               --------->ARR11(3)<-----------------------TaNAC69(2) ---->ANAC58        ----------->HVH21          <---------At4g35610 ----------->HVH21 ================ ---->ANAC58        <------NtERF2       ========================================bZIP_DOF    <-------- -------GAMYB       <---------SPL7      <----------DOF2          --------->At4g35610 <------ZmHOX2a(1)   gcagttgtggtgcacgagagtcgggacggaacgtagttggctctttttcggcagatatttcgctattcgctgacgtggcaacctctaggagcttcccgca  5998700              <------------CBF           ------------>CBF          ------>ZmHOX2a(2)         <-----------------AGL1     --------->ANAC55(1)     --------->ANAC55(2)                                  <---------ARR14(2)     --------->ANAC46                                     ------->TEIL    <---------LBD16                                       --------->ARR14(2) ================HOX2a_HOX2a                          <---------LBD16                               - -->LBD16<------ZmHOX2a(2)                          <---------ARR14(2)                  --------->DAG2 ->LBD16<---------ARR14(2)               ---------->DOF2--------->LBD16                ---------->DOF2 ===============HOX2a_HOX2a     ----------->GT1     --------->ARR14(2)         <----------ID1       - -LBD16 --------->ARR14(2)  <<<<<<<<<<GATA-1  <----------DOF2                  ----------->GT1-------   taactatacggatcccaattggcattctgaaatcgagtgaataaaaagctttggaatccggacctgtatggcactgtattagggaaaaaaaaagccgaaa  5998800                                                           <---------At4g35610         <---------GLK1(1)                                                  <---------TOE2(2)                    --------->GLK1(1)       ------------------------>ANAC81      --------->GLK1(1)                         <---------ARR11(3)       *TSS                      --------->DAG2   <---------TOE1(2)                --------->LBD16 -------->ANAC58    --------->DAG2         <---------ARR14(2)                   ------>ZmHOX2a(1) -------->ANAC58   ---------->DOF2         --------->ARR14(2)           --------->HSFC1(2)      ----- --->DOF2     --------->AHL20(2)---------->DOF2   <---------TOE2(3)     <---------HSFC1(2)     ------   gcgagccaaaacaaaaaaaaataaagcagaacaaaaaagtttgcaaatatccaaggtttttagcttagtcaagaagcctctcctccgagatttctcgccg  5998900           --------->ZAT18                                                           <---------ANAC58           <---------ZAT14                                                           <---------ANAC46         --------->ZAT2                                                              <---------ANAC58         <---------At4g35610                                                    <-----------RAV1(1)         --------->At4g35610                                               <---------ZAT14   --------->TOE1(2)                                           <--------P  <---------ZAT18 ------->TEIL                                         <---------------AGL15--------->ZAT18        <-- ---->At4g35610                 <-----------GT1       <----------DOF2      --------->ZAT14<---------MYB52(1) --->DEAR3(1)     ---------->DOF2         <---------MYB52(1) ----------->GT1 ------->TEIL<-------GAMYB   atgaaactacgagctcactggaaagtctgatttttttcttctccgttcccgttctactttctctggtaactctcttgtgtacttgttgctcggttaactg  5999000          <----------DOF2    <---------O2           ------>ZmHOX2a(1)   --------->MYB52(2)    --------->O2   <-----------GT1         <------MYB46(1)          <---------ANAC46   ------>ZmHOX2a(1)       --------->LBD16 <------MYB83 <---------ANAC58 --------DOF2 --------->YAB1      --------->AHL20(2)    <---------ANAC58      -------->P   ctttcctcgtgacttttcatatttctatcctgaaaattaagtagtgggtttgtttgatgcgagttaaactgagtggaatctaccaaaaacttgatgtgag  5999100                                                                                             <-------       <---------ANAC55(2)                                                                  <--------       --------->ANAC55(1)                                   <---------YAB1             --------->ATHB12       --------->ANAC58                               <----------DOF2                  <---------YAB1       --------->ANAC58                   ---------->DOF2  <-----------GT1       <---------ANAC46       --------->ANAC46               <---------At4g35610 <---------YAB1      --------->ALFIN1     <---------ALFIN1                 --------->At4g35610 <---------AHL20(2)  <---------AtMYB61     -   ----------->RAV1(1)              <--------P   ---------->DOF2          <-------TEIL <---------AHL20(2)   aactgcaacacgcaaattccattgaaatttgataaatggtagcttaaagttgaaagcttttttattattctgaagatgcagtggtgttttttattgggga  5999200                                <---------ANAC58                              <---------ARR11(3)                   <---------ICU4                  <---------YAB1<---------ANAC58        --------->TOE2(3)     --------->ARR11(3)                                   <---------MYB59  <   <---------KAN4(2) <---------YAB1                                             <------ZmHOX2a(1)   - --ANAC46       <------ZmHOX2a(1)   <---------YAB1                       --------->CCA1(2)        --- -LBD16 --------->YAB1<-----------GT1                ------>ZmHOX2a(1)  --------->ARR11(3)        --- ---------->GT1<---------YAB1<---------CCA1(2) --------->MYB59          <---------ARR11(3)    -------   tagagtataatcttattaggattattactatatatcttgtgatagagtttaggtcctatatttgagggattagagatatataggacctaaactctatcac  5999300  Previous    Next  AGI:  At1g17455.1    Description:  ELF4-L4 (ELF4-LIKE 4). similar to ELF4-L2 (ELF4-LIKE 2) [Arabidopsis thaliana] (TAIR:AT1G72630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65274.1); contains InterPro domain Protein of unknown function DUF1313 (InterPro:IPR009741) Range:  from: 5997173    to: 5998468    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g17460.1    Description:  TRFL3 (TRF-LIKE 3); DNA binding / transcription factor. similar to TRFL6 (TRF-LIKE 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G72650.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45641.1); contains InterPro domain Telomere repeat binding factor (InterPro:IPR013127); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 5998807    to: 6002709    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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