Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------ZAT2                                                                                    --------->At4g35610                                                                                    --------->ZAT2                                                                                    <---------At4g35610                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                               --------->At4g35610                                                                               <---------At4g35610                                                                              <---------ARR14(2)  <--                                                                              <---------ARR11(3) ----                                                                              --------->ARR14(2) <---                                                                              <---------AGP1    <----                                                                              <-----------ARR10<-----                                                                          <---------ANAC46   <------MYB83                                                                         --------->ATERF1(1) <------MYB46(1)                                                                         <------NtERF2      ---------                                                                        ------>NtERF2       <--------                                                                       ----------->HVH21    <--------                                       ---------->DOF2                 <---------DEAR3(1) <---------MYB52(1)                --------->At4g35610  ------>ZmHOX2a(2)          <------ZmHOX2a(1)   --------->GLK1(1)    <-------GAMYB                    ==================================HOX2a_HOX2a  <---------GLK1(1)   <---------MYB46(3)          --------->At4g35610              ======================HOX2a_HOX2a<---   --------->MYB52(2)          <---------At4g35610              =======================HOX2a_HOX2a<--   tgagtttgttgaacgagttgctgagtctgtgtttgctgatctaaagatgaagaagggtgagagagaggagaaggcgacgggatctgagctccgattggtg  5987400                                                                                               <-----                                                                          <---------At5g28300  <-----                                     <---------ANAC58                 <---------MYB46(3)       ------                                     <---------ANAC46                 --------->MYB111(1)  --------->ANAC58 -------ANAC46                       <---------ANAC58                 --------->MYB52(2)   --------->ANAC46 ------->GT1                    <------MYB46(1)                       --------->MYB111(2)  --------->ANAC58 ---MYB83                       <------MYB83                          --------->MYB46(2)<---------ARR14(2) -----MYB46(3)                 --------->MYB46(2)                  <---------MYB46(3)   --------->ARR14(2) ----ANAC46            <------ZmHOX2a(1)                          <---------AtMYB61    <------NtERF2 >MYB55(2)      <------MYB83 <---------MYB52(1)                <---------DEAR3(1)     --------->LBD16 -AtMYB61       <------MYB46(1)--------->MYB111(1)        <---------ARR11(3)        <---------LBD16 -MYB46(3)    <--------P  <---------ARR11(3)          <---------YAB1 <--------P<---------WRKY38(1) ---MYB46(1)  --------->ALFIN1 --------->MYB59      <-----------GT1--------->MYB55(2)--------->DEAR3(1) -----GAMYB  <-------GAMYB--------->ARR11(3)        --------->YAB1--------->ALFIN1--------->DEAR3(1)   ggttagaagaagtagggttgggagaggagatgttaggttgcgaattgttctgaattacaataccttcggtggtagttacagtcatcgccggagacgcagc  5987500                      <---------At4g35610                <---------TOE2(3)     <---------------AGL15                               <---------TOE1(3)    <-----------------AGL1   --------->ICU4           <---------YAB1                 <---------HSFB2a(1)    <-----------------AG   --------->YAB1          <---------YAB1                    --------->HSFB2a(1)   --------->MYB52(1) --------->At4g35610          --------->ICU4                    --------->HSFC1(2)   <-----------GT1    <---------ZAT2            --------->ICU4--------->DAG2         <---------HSFC1(2) -NtERF2<---------GLK1(2)<-----------HVH21    <---------At4g35610               <------ZmHOX2a(1) ----At4g35610        --------->ZAT2    <---------MYB46(3)   ---------->DOF2 <-----------RAV1(2) --->At4g35610 <---------GLK1(1)  <---------MYB46(3)  <---------REM1(1)     <-------TEIL       <-----   ggaattaacagaattggaaatcggagctgtcatgagttgttgttgttgagatgatgatgaaggtaaaggagtagaagatgcaggagaaggttccatagga  5987600                                                  --------------->AGL15                                                  <---------------AGL15                                                --------->LBD16               >>>>>>>>>TBF1                                                ------>NtERF2                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               --------->ANAC58            >>>>>>>>>TBF1                                               --------->ANAC46        --------->REM1(2)                                               --------->ANAC58   --------->ZAT2 >>>>>>>>>TBF1  >>>>>                                             <---------ATERF1(1)  <---------ZAT2xxxxxxxxxxxxxxxxxxxxx                                            <---------ARR14(2)    --------->At4g35610        >>>>>>>>              <---------GLK1(1)             --------->ARR14(2)    <---------At4g35610     >>>>>>>>>TBF1 <------ZmHOX2a(1)  ----------->HVH21  --------->GLK1(2)        <-----------RAV1(2) >>>>>>>>>TBF1 -ZmHOX2a(1) --------->ARR11(3)        <---------ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)>>>>>>>>>TBF1   ttaggagattgtagagatttcggtgacagagacgatgagggaatcggttccgccattagaagaaacccagctgtgaagaagaagaagaagaagaagaaga  5987700                                                                             *TSS                                                                     --------->LBD16----------->GT1              <-------GAMYB                                         <---------HSFB2a(2) ----------->GT1                                                    --------->HSFB2a(2)--------->AHL20(2) >>>>TBF1    <------MYB46(1)                                       <---------LBD16-------->ZAP1 xx>smallRNA(se3)                         --------->YAB1     <---------AHL20(2) <---------WRKY18(1) >TBF1       <------MYB83     ---------->ID1            <---------AHL20(2)   <------------CBF   agaaggtgtattatttggttgagaggggttttgtcgattttctctcatgaaatcgtgttttatttttttcccagaagtttattgaccgataaaatatggt  5987800                                                             <-----------TGA1                                                             <-----------HVH21                                                            --------->bZIP60(2)                                                            --------->O2                                                            <---------O2                                                            --------->TGA1a                                                            --------->ANAC58                                                            ========================================bZIP_DOF                                                            --------->ANAC55(1)                                                            --------->ANAC46                                              <-----------ARR10                                              --------->GLK1(2)                                              <---------ARR14(2)                                              --------->ARR14(2)                                             <---------GLK1(2)   <---------At4g35610                                    ----------->GT1         --------->ANAC58                                  <---------LBD16           <---------TGA1a                                  --------->LBD16         <---------ALFIN1                                 <---------HSFB2a(2)   <---------SPL7     --------->At4g35610<-------                                <---------LBD16----------------------->TaNAC69(2)            <-------                              <---------ARR14(2)      <---------ANAC46    <---------At4g35610--------                    <-------GAMYB<---------ANAC46    --------------->AtSPL3                ----------                    ==================================================MYC_MYB         ------>ZmHOX2a(2)                   <---------MYB46(3)    =============================bZIP_DOF    <---------YAB1 <---                   --------->MYB52(2)    ---------->DOF2 <---------REM1(2)<---------LBD16---------->DOF2     <---------AHL20(2)       --------->ARR14(2)   ------------------>SPL14     <---------At4g35610   cttctattttttttgttttgtttgttgaatcagttctggggaaaaaagaatctgagccgtacacgtcagtagatttagcggaagatgatcgaaaagatac  5987900                                                                                       <---------ARR11(3)                                                                                       --------->AHL20(1)                                                                                       <---------AHL20(1)    <---------ZAT14                                                                    --------->AHL20(2)    --------->ZAT14                                                                --------->YAB1 --GLK1(2)                                                 <------ZmHOX2a(1)      <---------ATHB12 --ARR11(3)       <---------ICU4                  <----------DOF2                --------->ANAC58 ->ARR11(3)      <---------YAB1                   <---------DAG2                 --------->ANAC58<--- ->ARR10         --------->ICU4         --------->ZAT18  <---------TOE1(2)      --------->WOX13(1)  < ------------AtSPL3       <---------GLK1(2)    --------->ZAT6             --------->AtMYB61<---------   ttgtactgaactgtgtttcattattccagactctcgcacaactgctctaacactttttgtaggattatctcatagaccaatgcaatcaatattttacatt  5988000                             --------->TOE2(3)                            --------->ANAC58                                  <---------ZAT18                            <---------ANAC55(2)                               --------->ZAT14                            --------->ANAC46                                  --------->ZAT18                           <-----------STF1                                  ----------------------->TaNAC69(2)                           <-------TEIL                                     <---------ZAT18                         --------->ARR14(2)                  --------->At4g35610              <---------ICU4--------->ANAC58                 <---------At4g35610        <-----------GT1             --------->AHL20(2)                            <-----------RAV1(2)<---------ZAT14 ------AHL20(2)     --------->TOE2(3) --------->DAG2  <---------MYB52(1)    --------->ZAT18 -----------GT1  <-----------GT1     ---------->DOF2<---------ANAC58       <---------ZAT6 --------->ANAC55(2) --GT1 <-----------GT1   <---------ARR14(2)         <---------ANAC58 ------->TEIL     <-----------GT1   tttttctcttcaccatttattacatcaaatacgtcaacaaaaagtcaaactgtttcgttactcaggtgatgaaactagtgtgcactattttcacgttttt  5988100                              --------->At4g35610                        <---------AHL20(2)                       --------->AHL20(2)                       --------->AHL20(1)                       <---------AHL20(1)                       <---------AHL20(2)                                        <---------WOX13(1)                   <---------AHL20(2)                                      --------->ATHB12                  --------->AHL20(2)                                     <----------DOF2        <----                  <---------AHL20(2)      <-----------GT1     <---------YAB1   --------->ATHB12 -----            <---------YAB1    <---------At4g35610     <---------GLK1(2) --------->TOE2(3)       -----   ggtgtttcagaattatgtttttaaatttattcagcacaatgttttttctgcctcttgattctgtatgattcaaacctttattgattaactaagtaaacta  5988200                                                                                   <---------------AGL15                                                                                   <----------DOF2                                                                                   ==================                                                                                   --------------->AGL15                                                                                --------->ARR11(3)                                                               <---------ETT(2) <---------ARR11(3)         ----------->GT1         --------->AHL20(2)         <---------ANAC46   <---------GLK1(1)    - -----ZAT14                      <---------AHL20(2)  <---------ARR11(3)<---------AHL20(2)    -------- ---->ZAT14                     --------->AHL20(2)   --------->ARR11(3)--------->AHL20(2)<---------AHL20(2) ---->ZAT18           ------>ZmHOX2a(1)    <---------YAB1<-----------GT1<---------AHL20(2)-----------   cactaactagatggaaacaacatcctgttgatcatttaattcattcttatttggagatttttccgtctacaaattaaatagaaatctttatttagttata  5988300  Previous    Next  AGI:  At1g17440.1    Description:  EER4/TAF12B (TBP-ASSOCIATED FACTOR 12B); transcription initiation factor. similar to TAF12/TAFII58 (TBP-ASSOCIATED FACTOR 12), DNA binding / transcription initiation factor [Arabidopsis thaliana] (TAIR:AT3G10070.1); similar to TATA binding protein associated factor [Solanum tuberosum] (GB:BAE46416.1); contains InterPro domain Transcription initiation factor TFIID; (InterPro:IPR003228); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 5983977    to: 5987777    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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