Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->MYB46(3)                          --------->ARR14(2)                                         --------->ANAC46                              <---------ARR14(2)                                         <---------ALFIN1                              <-----------GT1                                        --------->MYB46(3)                             <---------ARR11(3)                                    --------->At4g35610                                --------->ARR11(3)                                    <---------HSFC1(2)                                 --------->KAN4(2)                                    <---------At4g35610                               <----------TaMYB80                                    --------->HSFC1(2)                                <---------KAN4(1)                                <---------SPL7                         --------->LBD16--------->KAN4(1)                                ----------->HVH21                      <------NtERF2  --------->GLK1(1)                               --------->MYB46(3)                     --------->DEAR3(1)                              --------->ANAC46                       --------->ATERF1(1)                --------->HSFB2a(2)<---------ATERF1(1)              ------>NtERF2     <---------GLK1(1)              ----------->RAV1(2) --------->SPL7                    --------->LBD16   --------->HSFB2a(1)           ------>ZmHOX2a(1)  ----------->RAV1(2)                  ------->GAMYB      <---------HSFB2a(1)          <---------ALFIN1    <---------LBD16                      --------->ANAC46  <---------KAN4(2)     --------->ANAC58       <---------ALFIN1<---------ALFIN1      --------->MYB46(3) ---------->TaMYB80     --------->ANAC58<---------ALFIN1 --------->PCF2          ------>ZmHOX2a(1)   --------->LBD16  ------>ZmHOX2a(1) <---------ZAT18--------->ANAC58      <----------DOF2        <---------LBD16 --->TEIL<-----------------AGL1<---------MYB55(2)      <---------TOE1(2) <----------DOF2          <-- ------->AtSPL8 <---------HSFB2a(2)--------->ANAC58   ------>ZmHOX2a(1)------>NtERF2<---------GLK1(2)   actcctcaagctcctcttctggcacactctccaccggacgctcccaccacggtctcctactttcctcatccgccgcgttatcaccggaatatccctccaa  5928300                                   <---------ANAC46           ------>ZmHOX2a(1)                    --                                   <---------ANAC58         ------>ZmHOX2a(2)                     <--                           --------->WOX13(1)              <------ZmHOX2a(2)                      <--                     <---------ANAC55(2)                  <---------ARR11(3)            <------NtERF2                  <---------ARR14(2)                      --------->ARR11(3)           <---------RAP2.3(1)                  --------->ARR14(2)              <---------ARR14(2)                   ------>NtERF2                  --------->ARR11(3)              --------->GLK1(2)                   <---------RAP2.3(3)    <---------ZAT18  --------->ANAC55(2)          --------->ARR14(2)                  <---------ANAC46    --------->LBD16  <---------ANAC58         ----------------->AGL1                  <---------DEAR3(1)  <---------LBD16 <---------ARR11(3)     <---------AtLEC2 --------->ARR14(2)         --------->RAP2.6(3)  <---------At4g35610<---------ANAC58   <---------REM1(2) <---------ARR14(2)       ----------->HVH21 ---------HVH21 ----------->ARR10  <---------ANAC58     ----------->ARR10          <---------YAB1 <--   cttcaccggactcttacgaagatacttgtctatcaatgcgtctacatggccaaatctgtagatcctatcgcatttagagaacgttatgacggcgattttt  5928400                                                      --------->HSFC1(1)                                          --------->O2<---------HSFC1(1)                                          <---------O2<---------HSFB2a(2)                                          <---------TGA1a                                          --------->TGA1a           <---------CCA1(2)                                   --------->MYB46(3) --------->HSFB2a(2)                             <---------ANAC58        <---------ANAC46                             <---------ANAC58   <---------ANAC58<---------ANAC55(2)               ===                             <---------ANAC46   <---------ANAC58<---------ANAC46                  <XX   --------->LBD16        --------->GLK1(1)    <------NtERF2    <---------ANAC55(1)               ---  --------->TGA1a         <---------GLK1(1)   ------>NtERF2     <---------ANAC58                 <XXX  <---------TGA1a        <---------ARR14(2)  <---------DEAR3(1) <---------ANAC58                <---- ---->NtERF2             --------->ARR14(2) --------->RAP2.6(3) --------->ANAC55(2)         <-------- -------ANAC58       <---------At4g35610  --------->ANAC46     --------->MYB52(2)           <-------- -------RAP2.6(2)    --------->At4g35610  ----------->HVH21  <---------MYB52(1)     ================= -------ANAC58       <---------LBD16 --------->At4g35610   ----------->GT1          ------>ZmHOX2a(1)   gcgcccgtgagaacgctcaattcagcggatttcttgaacagcccacgacggcgtttcgagaacgttacttgtctcttggtctcttcctcgattttcttga  5928500                                                                     ------>MYB46(1)                                                                     -------->P                                                                     ------>MYB83                                                         <---------ANAC58                                                         <---------ANAC58 <---------CCA1(2)    <---------ANAC58                   <-------GAMYB ======================HOX2a_HOX2a                <----------DOF2  ------->GAMYB XXXXXXXXXXXXXXXXXXMIR157A-C                      <---------DAG2  --------->MYB46(3) --->ZmHOX2a(2)       <---------ANAC46           <---------------AGL15                       -------- XXXXXXXXXXXXXXXXMIR157D <----------DOF2         --------------->AGL15                     --------->GLK1(2) -----ARR11(3)        <---------ANAC58          <-----------------AGL3                     <---------ARR14(2) -ANAC58             ---------->ID1             ----------------->AGL3   <-----------HVH21 --------->ARR14(2) -ANAC58         --------->O2           <---------MYB46(3)        <---------MYB55(2)      <---------GLK1(2) ====HOX2a_HOX2a------>ZmHOX2a(1)    <-----------RAV1(1)<---------MYB46(3)       <----------DOF2    <   tctctatcttctgtcttcctcgtgtcgttttaggggtttgtgttgttgtctccttttttggttgtctaaccaacatgttagggctttgaacagaatcctt  5928600                                                                                            <------MYB83                                                                                            <------MYB46(1)                                                                                           --------->MYB59         --------->ANAC58                                                              --------->ATHB12     --------->AtLEC2                                                                 <---------YAB1     --------->ANAC58                                           ------->GAMYB        --------->ARR11(3)     --------->ANAC58                                         -------->P             <---------ARR11(3)    --------->WOX13(1)                             <----------DOF2                  --------->RVE1(1)  <------NtERF2                                 --------->ARR11(3)            ----------->GT1 <-----------HVH21                       --------->AtLEC2    --------->MYB52(1)     --------->CCA1(1) ->ATHB12--------->ANAC58           ------>ZmHOX2a(1) --------->YAB1        --------->CCA1(2)       < ----------ARF1              <----------DOF2    <---------ARR11(3)          --------->At4g35610     <   gggcgtcaagcaagtcatcgatgaagtttctctttctccttccatgaacaaatctttcatgactaaccgagaggggagagatgaaaatatcattaggttt  5928700                                                   <---------AHL20(2)                                      --------->ICU4                                      <---------YAB1                     --------->SPL7                                 ----------->GT1  <---------AHL20(2)     <---------TOE2(2)                                 --------->ANAC55(2)                     <---------TOE1(2)                                 <---------ANAC55(2)                 <---------------AtSPL3                           --------->ICU4         --------->AHL20(2) --------------->AtSPL8             <-----------TBP<---------ICU4  <---------TOE2(3)  <---------DAG2                       - ---------ANAC58           <---------YAB1 ---------->DOF2      <----------DOF2                <------ ---------ANAC58         --------->YAB1--------->YAB1    ---------->ID1<---------SPL7        --------   ttccttggtcgagggatttatagtcgttcatgattatgtaataataaaggaattaatttgtcttacttttcttcgtacgtttatggaatgttgtattaaa  5928800                 <---------AHL20(1)                 --------->AHL20(1)         --------->AHL20(1)         --------->AHL20(2)         <---------AHL20(1)                            ----------->GT1         <---------AHL20(2)  --------->ATHB12     <---------GLK1(2)        <---------ATHB12    --------->ICU4        <---------ANAC58    ------------>CBF  <---------LBD16     ---------->DOF2 ------>TEIL   <---------TOE2(3)       ------->TEIL   --------->HSFB2a(2) <-----------RAV1(1)  ------ ---AHL20(2) <---------AHL20(2)     <---------ATHB12  <---------HSFB2a(2)------->MYC3          <----- ->AHL20(2)  --------->AHL20(2) ------------>CBF  <---------ANAC58       <-------MYC3   ---------->DOF2   tgcacctccaattaattaatatttttcggaatgattcaatgaatcaaagatagcttctcgtaaaaatgtaagacatgtgttgtcttatacaaaagttata  5928900                                                                                           --------->CCA1(2)                                                                                      <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                                  --------->AHL20(2)          <---------ARR14(2)                                                      <---------AHL20(2)          --------->ARR14(2)                                                  <---------YAB1       --------->AHL20(2)                                                    --------->AHL20(1)      ----------->TBP                                                        <---------AHL20(1)  --------->AHL20(2)    <----------DOF2                                      <---------AHL20(2) --->HSFB2a(2)   <---------ARR11(3)                     ----------->GT1      --------->AHL20(2) ----HSFB2a(2)--------->LBD16       ---------->ID1    <------------CBF      --------->AHL20(2)   gaaataatataaaatccgagatactactttccattttagtcgtttattgaataatcgattgtgaatttgtgatacacattatatttatataatatatgca  5929000                                                                                  --------->AtLEC2                                                                                  --------->ANAC58                   ------->TEIL     --------->ANAC58                              --------->ANAC58                   --------->GLK1(2)--------->ANAC58                         --------->ANAC58                  <---------GLK1(2) <---------ANAC55(2)                      --------->ANAC58                --------->ANAC58    --------->ANAC55(2)                      --------->AtLEC2                --------->ANAC58   --------------->AtSPL3             --------->YAB1                --------->ANAC46   <---------------AtSPL8             <---------ICU4            -----            --------->CCA1(2)      --------------->AtSPL8            --------->ICU4 --------->YAB1     --------->TOE2(3)      <-----------GT1                          <---------ATHB51 --------->At4g35610     <---------MYB59    <----------DOF2<-------TEIL      <---------ANAC46<-----------HVH21      -----   tagtctacctaaatatacacgaatctctttttactatcacgtacacatatacaaacgtagcatgtagaacaattatgtcatgccaagcagaagaaaaaca  5929100          --------->O2          <---------ANAC58          --------->TGA2(1)          <---------O2          <---------bZIP60(1)          <---------bZIP60(2)          <---------ANAC46          <---------ANAC58          --------->bZIP60(1)          <---------TGA2(1)                                      --------->GLK1(1)         ----------->STF1                                        <---------GLK1(1)        <---------TGA2(2)                                       <---------ICU4       ----------->HVH21                                      <---------TOE2(3)    --------->ARR14(2)                                 --------->ARR11(3)       --------->At5g28300    <---------ARR14(2)                                 <---------ARR11(3)      ----------->GT1 ---->TOE2(2)                     <---------ANAC55(2) --------->YAB1         <---------LBD16  ------- ---->TOE1(2)                     --------->ANAC55(2)<---------YAB1       --------->ARR11(3)  <------   tatgagtatatgacgtcttcttgccaagaagtgatcacatattcaaattacacatatgatatttaagaattccaaatatcacggtaaaatgtctaagtga  5929200  Previous    Next  AGI:  At1g17310.1    Description:  MADS-box protein (AGL100). similar to MADS-box protein (AGL60) [Arabidopsis thaliana] (TAIR:AT1G72350.1); similar to SRF-type transcription factor family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97557.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 5928007    to: 5928660    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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