Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <----------DOF2                   --------->ANAC58                   ------>MYB46(1)                   --------->ANAC58                   --------->AtLEC2                                                          --------       ---------->DOF2--------->ZAT18                                                       --------- ------>ZAT6       ------>MYB83                                                             --------- ---->YAB1    --------->ANAC58      <----------DOF2                                         <--------HAHB4 ----ATHB12   --------->ANAC58<-----------TGA1                                             <---------ATHB12 ->WOX13(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ALFIN1         <---------YAB1 ------------->ANAC81 <---------ZAT18                     <----------DOF2       <----------DOF2   acactaaaacaaaggcacaccaagcacactttcgtcatctttttccatctctgaatttctcttttgctccacattccatcttctttcaactctatcatta  5915800                                  <----------DOF2                                <---------At4g35610                            --------->TOE1(3)                            --------->TOE2(3)                                     --------->GLK1(2)  <----------DOF2           --------->AtMYB61  --------->ARR11(3)    --------->GLK1(2) ->TOE2(3)                -------->P       --------->YAB1           --------->ARR11(3) >ATHB12              ------->GAMYB    <---------AtLEC2             <---------ARR11(3) >YAB1<---------TOE2(3)--------->At4g35610--------->ICU4<---------YAB1    <---------ANAC46   gctcctttaagtttgcaatttcaacagcaacctcagcttttgcattgattatctcgttatcaatgctggagattttgggtagagcatctataacctcttc  5915900                                  ------>ZmHOX2a(1)                                 --------->TOE1(2)                                ------>ZmHOX2a(2)               ------>MYB46(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             ------>MYB83              --------->ANAC46<---------ARR11(3)              --------->MYB46(3)              <------            <---------ALFIN1  --------->ARR11(3)              --------->AtMYB61               -------          =============================HOX2a_HOX2a            <---------MYB59           <---------CCA1(2)          ------>ZmHOX2a(1) <---------ATHB12        <----------DOF2              <---------GLK1(2)   atacatacaatcctccacccatttgaacaaatgatcctgcaattccatctcaagcttttatcgaccaaacacaaaaaacatcacattctcatatcaaatc  5916000                                                                                    ----------->RAV1(1)                                                                                    <---------ALFIN1                                                                                   --------->ZAT18                                                                            <-----------HVH21                                                                           <---------O2       -------                                                    <---------ANAC58       --------->O2       -------                             ---------->DOF2        <---------ANAC58 ----------->TGA1        --------   --------->REM1(1)       xxxxxxxxxxxxxxxx>smallRNA(i)            --------->YAB1  <---------ZAT18 -----ARR10              ---------->DOF2--------->LBD16            <---------ICU4  --------->RAP2.3(3) -->ARR14(2)   <----------DOF2         <---------LBD16            --------->ICU4 --------->PCF2  ----   tacttacatcttcacagcttttgcaccgaaagaaaggccttccagggttcttagccgtgctcgatgtaaacatgacgacgtcgagcccacatttacactt  5916100          --------->ANAC58          --------->ANAC58          --------->ANAC46          --------->O2         <---------LBD16        <---------ALFIN1        --------->MYB52(1)    <---------GLK1(1)    --------->GLK1(1)  <------ZmHOX2a(1) --------->ANAC46                                                <---------ALFIN1 --------->ANAC58                            <---------ICU4   --------->RAP2.6(2)               <---- --------->ANAC58                 <---------At4g35610       ------>NtERF2 <---------ALFIN1      <---- -->ANAC46--------->TGA1a   --------->ZAT2  <---------ATHB12<---------At4g35610      <---------ANAC58 -->ANAC55(1)               <---------At4g35610    ------>ZmHOX2a(1)   <-----------GT1          ----- ------->AGL15              <---------ZAT2  --------->ICU4  <---------ATERF1(1)  <---------GLK1(1) ----->MYB52(1)             --------->At4g35610    --------->LBD16  <----------DOF2  <---------ANAC58   aacaggaaacccacggctcttgaaacctccagcttcagcattcgaaatcattcctgaattgcagcctccactttcaccactcgaattccttgagttgcag  5916200                                                                                 <---------ANAC58                                                                                 <---------ANAC46                                                         --------->ATHB12        <---------ANAC58 <--                                               --------->ALFIN1   <---------ARR14(2)              <--         <---------ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)     *TSS--------->ARR14(2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <----------DOF2  ---------->DOF2                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxx -----At4g35610                             <---------TOE1(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----ZAT2                                  <---------TOE2(3) <---------LBD16 <---------ARR14(2) <--- ---->At4g35610 ------>ZmHOX2a(2)  --------->ICU4       <---------YAB1      <XXXXXXXXXXXXXXXXXXXXXMIR402   ctcataatgcagatttgatcgaaaaatttgagagaaaatgatttttagggtttgggttttgatttggggatttttcagaggtttcgtcgactttgaagtc  5916300                                         --------->ANAC55(2)                                         <---------HSFB2a(2)                                    --------->HSFB2a(1)                                          xxxx                                    <---------HSFB2a(1)                                          <---                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                 xxxxx                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                  xxxxx                              --------->MYB52(1)                                            ---------                           --------->TOE1(3)                                            <xxxxxxxxxxxx                           <---------DAG2--------->HSFB2a(2)                         <-------GAMYB  <                           --------->TOE2(3)                                        <---------MYB46(3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       --------->MYB55(2)                      xxxxxxxxxxxxxxxx>smallRNA(i)                                  ----------->GT1 <                     <---------CCA1(2)   <---------ANAC55(2)                       --------->ALFIN1<x -----GAMYB     <---------DEAR3(1)xxxxxxxxxxxxxxxx>smallRNA(i)                 <---------At5g28300 <- -------At4g35610 <------NtERF2  xxxxxxxxxxxxxxxx>smallRNA(s)                 --------->MYB52(1)xxxxx xxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <-----------GT1  <xxxxx ------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->WOX13(1)    <---------AHL20(2) <xxxxx   tgttgatagcacaaaacgtcgtcgtatcaccttaacggatgttctgtaacgtctgtcaattacgctgttagaaggaattttaacggtggttaattaggcc  5916400                                                                            <---------MYB52(1)                                                                           --------->At5g28300                                                                           <-------GAMYB                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       <---------DOF5.7(2)                                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      --------->ZAT18                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      <---------ZAT14                                                                      --------->ZAT14                                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               <-----------GT1                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxsmallRNA(s)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     ------->GAMYB                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ANAC58                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC46                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->ANAC58                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(s)                           <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i)                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------DOF5.7(2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)                            xxxxxxxxxxxxxxxx>smallRNA(i) <---------WRKY38(1)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------WRKY45                                        xxxxxxxxxxxxxxxx>smallRNA(s) <---------WRKY12                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(s)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---NtERF2                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <xxxxxxxxxxxxxxxxsmallRNA(i) >MYB59          ----------->GT1              ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxxxxxx>smallRNA(i)  ----------->GT1 xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------------- ----------HVH21----------->GT1            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ---------------- xxxxxxxxxxx>smallRNA(s)           <----------DOF2   xxxxxxxxxxxxxxxx>smallRNA(s)  <-----------GT1 xxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-------------- xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------WRKY12----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(i)   gagtcaacgcaaacttgaatgttaaaacagaagtcaactttttgttgaaagttaaaacggccatttcacgagttcacggttaatttgaccattttttgta  5916500                                                     --------->YAB1                                                  <-----------GT1                                                  <<<<<<<<<GT-1                 --------->ZAT18                                             <---------YAB1                     --------->ZAT14  <---------TOE2(3)                          --------->ICU4          <-----------HVH21  <---------TOE1(3) <-----------GT1         --------->TOE2(3)       <----------DOF2 xxxxxxxxx>smallRNA(i2)                   <---------TOE2(3)   <---------ICU4    <---------ZAT14 >AGL15      <-----------GT1              <---------YAB1   --------->YAB1       <---------ZAT18     - ->AGL1  <---------AHL20(2)          ----------->GT1 --------->TOE2(3)     --------->ZAT14     >>>>>> -AGL15 --------->AHL20(2)           <---------ZAT6  --------->TOE1(3)     <---------ZAT14 --------->At4g35610   agttgaggtattaaataacatttttcccactaaattatagagttaacattattaaccataaacataatcactttcactggactggactcgagcagaagaa  5916600                         <-------GAMYB                        <---------MYB46(3)                        --------->MYB55(2)                       --------->ALFIN1                       <---------AtMYB61                      <-------GAMYB                      <---------MYB52(1)                     <---------DEAR3(2)                     <---------MYB46(3)                    <---------DEAR3(1)               <---------DOF5.7(2)              <---------WRKY45              <---------WRKY38(1)                                           <---------ANAC55(2)              <---------WRKY12                                         --------->YAB1          <-----           --------->ANAC58                            --------->MYB52(1)   <---------TOE2(3)  <-----    <------MYB46(1) <---------At1g77200        --------->SPL7          <--------HAHB4      <---------    <------MYB83    <---------DEAR4(1)         <-------TEIL           <---------YAB1    <-----------GT1    ----------->GT1 <---------DREB2C(2)        --------->ZAT14     --------->AHL20(2)   ---------->ID1 -------->ATHB12  <-----------HVH21            ---------->DOF2 <---------AHL20(2)----------->GT1 >>>TBF1   --------->ANAC58                <---------------AtSPL3  <---------AHL20(2)  <-----------GT1   gaagattggtaacaagtcaacgtcggtggttgaagacagattgaaccggtacagccataccggttttaatttatcattaagtatggttttttccttttct  5916700  Previous    Next  AGI:  At1g17277.1    Description:  transposable element gene. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78355.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666) Range:  from: 5915637    to: 5916205    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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