Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ANAC58                            <---------ANAC58      <---------ICU4   <-----------RAV1(2)     --------->ICU4   <------NtERF2                                                  ------>ZmHOX2a(1) -------MYB52(1)     <-----------HVH21                  <---------ANAC58        <---------MYB46(3) ------>DOF5.7(2)    <-----------TGA1                   <---------ANAC46       --------->ALFIN1 --------HVH21      <---------ANAC46                    <---------ANAC58    <---------ANAC46 ----GAMYB          <---------ANAC58      <-------GAMYB<------NtERF2        <---------ANAC58 -->ABI4(1)         <---------ANAC58     ------>ZmHOX2a(2)                 <---------LBD16 ->DREB2C(2)        <---------bZIP60(1) <------ZmHOX2a(2)             --------->AHL20(2) ->DEAR3(1)         --------->bZIP60(1)--------->ARR11(3)             <---------AHL20(2)       ------ --ALFIN1<-----------GT1    <---------ANAC46      <-----------RAV1(1)--------->AHL20(2)      <------- >DEAR3(2)       ------>ZmHOX2a(1)     <---------ARR11(3)         ----------->GT1 --------->PCF5 >MYB46(3)       ===============================HOX2a_HOX2a  <---------ANAC46  <---------AtMYB61----- >ATERF1(1)      ==============================HOX2a_HOX2a<---------MYB52(1)<---------ANAC58 <------- >DEAR4(2)<---------At5g28300 <------NtERF2<---------MYB52(1)<-----------RAV1(1)--------->ABI4(2)   gttagccatatttacggtcctggcgtcagggcgtagattgagatcgttgtctctggtgtcgttttgtgggattaaattgcggtggtcctcttcttcgtcc  5911600                    <---------At4g35610                    --------->ZAT2                    <---------ZAT2                  ------>NtERF2                 --------->DEAR3(1)           --------->DEAR3(1)           <---------ALFIN1            <-----------ARR10       <---------ZAT18                 --------->GLK1(2)      <---------ANAC58                <---------GLK1(2)      <---------ANAC58                <---------ARR14(2) --->SPL7  --------->AtMYB61         <---------HSFB2a(1) ----HVH21--------->MYB46(3)<---------ATHB12 ------>HVH21 --------->DEAR3(1)     --------->HSFB2a(1) --------->TOE2(3) --SPL7--------->ZAT18      <---------YAB1            <---------CCA1(2)               *TSS      <----   gacgagttgcgcaccatcgccgagctggtaatcaatgggagattcttctcagagtcaaatctcaaaattcaaaaactcgaaattcgatagaaaatgcgaa  5911700                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                                        ----------->GT1                                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <---------ZAT18                                                                   --------->ZAT14                                                                   <---------ZAT14                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  --------->DOF5.7(2)                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                ------->GAMYBxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <---------At5g28300 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             <-----------GT1 xxxxxxxxxxxxxxxx>smallRNA(i)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             --------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxx                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------GT1                                                           <xxxxxxxxxxxxxxxxsmallRNA(s) <-----------GT1                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxx                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)                      ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   ------------>MYB.PH3(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->YAB1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(s)           <---------ICU4          --------->TOE2(3)   xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxx          --------->ICU4           --------->TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ZAT6       <---------AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->AHL20(2)    <---------AHL20(2)        xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxx      --------->AHL20(2)<---------MYB52(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx -----KAN4(2)<---------YAB1 --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxx   taaacagattaaattatgagaaaactgttatttaatacctcaacttacaaagaatggccaaattaaccgtgaactcgtgaaatggccgttttaactctca  5911800                                              <---------At4g35610                                              --------->At4g35610                                              <------NtERF2                                             ----------->RAV1(1)                                           --------->At4g35610                                           <------NtERF2                                    --------->WRKY45                                    ----------->HVH21                                    --------->WRKY38(1)                                    --------->WRKY12                                   --------->DOF5.7(2)      --------->WRKY12           <---------ANAC58 --------->ATHB51  --------->DAG2                 <---------ANAC58 --------->ATHB12 ---------->DOF2               xxxxxxxxxxxxxxxx>smallRNA(i) x>smallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(s) xxsmallRNA(fl3)              xxxxxxxxxxxxxxxx>smallRNA(i)                                          < >smallRNA(se3)              xxxxxxxxxxxxxxxx>smallRNA(i)                                           - x>smallRNA(le3)             xxxxxxxxxxxxxxxx>smallRNA(s)                                           < xxsmallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(i)                            <---------MYB52(1) xxsmallRNA(s)     <-----------GT1<-------GAMYB  --------->ICU4         <---------MYB52(1)      ----- xxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx>smallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(s)     <-------- xx>smallRNA(si3) <-----------GT1<---------ANAC46<---------YAB1        <-------GAMYB    --------->ZAT14 xxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(s)<---------WOX13(1)----------->GT1 <---------YAB1-   acaaaaagttgacttctgttttaacattcaagtttgcgttgactcggcagcataattgacagacgttttagtccgttaaacatctgttactatagtctta  5911900         <---------ANAC58         <---------ANAC46                                                                       <---- ---------bZIP60(1)                                                                            ------ -------->bZIP60(1)                                               --------->ANAC46       <---------ICU4 ---------O2          <xxxxxxxxxxxxxxxxsmallRNA(i)               --------->TOE2(3)       --------->YAB1 ---->SPL7            --------->GLK1(1)                          --------->TOE1(3)      <---------ATHB12 -ZAT6   <---------ANAC58--------->YAB1                    --------->WOX13(1)      --------->TOE2(3) -------->O2   ---------->DOF2                           ------------>CBF   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   cgacgtcgttttcgtgctaaagagaaatcaaaatcgagaatagaaattctcaaaacaaaatcaattaccctaaacccaaatcgaaacttaatcatgcccc  5912000                                                                                     ------>ZmHOX2a(2)                                                                                   <---------AGP1                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                             <------ZmHOX2a(1)    ---                                                                             --------->ATHB12     ---                                                                             ===============HOX2a_HOX2a                                                                         <---------ANAC46  <---------ATHB12                         ------------>CBF                            <-------GAMYB --------->ARR11(3)                       <---------ANAC58                            <------NtERF2   <---------ARR11(3)                       <---------ANAC58                          <---------bZIP60(1)--------->GLK1(1)                    <---------WOX13(1)                           --------->bZIP60(1)<---------GLK1(1)                   <------------CBF                              <---------ANAC46  --------->ARR14(2)   --------->YAB1 <---------ICU4                                 <---------ANAC58  <---------ARR14(2) --NtERF2      --------->TOE1(3)                <---------MYB52(1) xxxxxxxxxxxxxxxx>smallRNA(i)   --- >NtERF2       --------->TOE2(3)              *TSS               <---------ANAC58 <---------CCA1(2)   caaaatcaaaatcgaaaccctaattgcttcaattcgttttctgaaatgccattagttagaaagaatggcgtcgttgtgaggattggatctccaatgcttc  5912100                                       --------->DEAR3(1)             <------MYB46(1)         --------->ABI4(1)                                 ------->TEIL             <------MYB83           --------->AtMYB61                        ----------->GT1         --------->ARR14(2)         --------->DEAR3(1)                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ARR14(2)         <---------ALFIN1                       <---------ANAC46         --------->GLK1(2)         <---------ABI4(2)                       <---------ANAC58    ------ ------>ANAC58               ---------->DOF2    ---------->DOF2            <---------ANAC58    <----- ------>ANAC58              <---------REM1(1)<------ZmHOX2a(1)           --------->ALFIN1     <------ ------>ANAC46  <---------MYB46(3) --------->MYB46(3)--------->CCA1(2)  --------->ALFIN1      -------   acgaatcagagaatttggtgggagatggagttgaagcaccaccgcgaggagaaagagatgaaattggagaagaagttgggggtgaaacgaatgtggtatc  5912200                                                 <------NtERF2                                                --------->LBD16                                                <---------SPL7                                              xxxxxxxxxxxxxxxx>smallRNA(s)           <------NtERF2               --------->ANAC58          --------->LBD16              --------->ANAC58         <---------ANAC46            ---------->DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ANAC58         --------->At4g35610         <---------ANAC58         <---------At4g35610=================HOX2a_HOX2a        <---------LBD16          ------->TEIL------->GAMYB    <-----------RAV1(1)        <-------TEIL --------->DEAR3(1) <------ZmHOX2a(2)          --------->ANAC58 --->At4g35610       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->ARR14(2)        ---------->DOF2 ----At4g35610    <xxxxxxxxxxxxxxxxsmallRNA(s)<---------LBD16 <---------ARR14(2)       --------->WRKY18(1) ---ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------ZmHOX2a(1)                <-----------HVH21 -->ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(i) >>>>>>>>>MYB2 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC58   tgagtcttgtggcggagaagacggagcacaagatgcagctaaagcaacgccggaaggagaagcagatcgaattggagaagaagctcgaggtcaagcgaat  5912300                              <------NtERF2                         --------->ALFIN1                       --------->ALFIN1                       <---------O2                       <-----------RAV1(1)                      --------->ARR14(2)                      <---------ARR14(2)                     <---------At4g35610                     --------->At4g35610                   ================RAV                   <-----------RAV1(2)                    <---------DOF5.7(2)                --------->ALFIN1                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <-              <---------REM1(1)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --              =================RAV                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->At4g35610              <-----------RAV1(1)          <---------ALFIN1                            <---------At4g35610              <---------bZIP60(2)  <-------TEIL   <---------------------WRI1      >>>>>>>>>TBF1    <-   gtagtatcaaatgttgatgtggcagatgtggccgaagttcgttctccacttaggcgaagtaaacgaaggcaaatcagattggaagaagaagctcacgatg  5912400                      --------->ANAC58              <------NtERF2             --------->LBD16                                           <---------At4g35610             <---------RAP2.6(3)                                       --------->At4g35610             <---------SPL7                                       --------->ALFIN1            <---------HSFB2a(2)                                 =================RAV            --------->HSFB2a(2)                                 <---------REM1(1)            <---------ANAC46                                <---------MYB52(1) ------->GAMYB            <---------ATERF1(2)                            <-------GAMYB  <-------TEIL           ----------------->AGL1                          <---------At4g35610--------->MYB46(3)           <---------LBD16                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ALFIN1                           xxxxxxxxxxxxxxxx>smallRNA(i)--------->LBD16 ------GAMYB--------->ATERF1(2)                    <-----------HVH21 <-----------RAV1(2) ------->At4g35610    --------->ANAC58       <---------ANAC58   <-----------RAV1(1)          <------- --------At4g35610<------ZmHOX2a(1)          <---------ANAC58   <---------bZIP60(2) <---------MYB52(1)   cagttgaaccagtgccggaaggagaagcaaatcaaattggagaagaagcttgaggtcagtccgttgatgtggcagatgcaaccgcagtttgttctccact  5912500  Previous    Next  AGI:  At1g17270.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G50420.1); similar to Os07g0572600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80219.1); contains domain PTHR13398 (PTHR13398) Range:  from: 5909242    to: 5911686    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17275.1    Description:  transposable element gene. Mutator-like transposase family, has a 5.8e-31 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 5912046    to: 5915306    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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