Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 ----------->RAV1(1)                          ----------->GT1                                                      ------                        <---------TOE1(2)                                                    <-------                        --------->SPL7                                             --------->ZAT2   -                       <---------SPL1(1)                                           <---------ZAT2<---                      <---------SPL7                                               --------->At4g35610                     <---------ANAC58                      ------>NtERF2           <---------GLK1(1)-                     <---------ANAC58                   --------->At4g35610 --------->ZAT2   <-------                    <---------------AtSPL8              <---------At4g35610 <---------ZAT2--------->GLK1(2)                    <---------------AtSPL3          <---------MYB46(3)--------->CCA1(2)  <---------GLK1(2)                    <-------TEIL  ------->GAMYB     <-----------RAV1(1)<-------TEIL<---------At4g35610                    --------------->AtSPL3        <---------At4g35610--------->ARR14(2) --------->At4g35610                 <XXXXXXXXXXXXXXXXXXXXMIR171B/C   <---------ZAT2     <---------ARR14(2) <---------At4g35610   aattgcattcgaagaattgaaattcgtacggttcaacagagagactagcgctagctgttgctgcctaagaagattcagagcttggagctcagattccttg  5911300                                                                                                <----     ----------->HVH21                                                                          <----   <---------ANAC58                                                                             <----   <---------ANAC58                                                                             ----- ----->HVH21                  --------->HSFB2a(2)                                          --------->ANAC58 --ANAC58                     <---------HSFB2a(2)                                          --------->ANAC58 -------->ANAC58       ---------->DOF2            ----------->GT1                         --------->RAP2.6(3) ------REM1(2)      --------->TOE1(3)  --------->TOE1(2) --------->YAB1                  --------->CCA1(2) -------->ANAC58    --------->TOE2(3)<---------------AtSPL8                    --------->DAG2  ------ --ANAC58      <------ZmHOX2a(2)     <---------------AtSPL3                   ---------->DOF2<------NtERF2   acacggcttgacattggatcaagcttaaagctcgagaagaatgtacgagtatcagtaaataagaacagaagtccgacgaataaagttagagagacggcag  5911400                                                                                                  <--                                                                                                  ---                                                                                              -------                                                                                             ------->GAMYB                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <------NtERF2      --------->MYB52(1)                                                                   <---------ATERF1(1)     ----------->HVH21                                                                    <---------ALFIN1   --------->ANAC58                                                            --------->TOE2(1) <---   --------->ANAC58                                                            --------->TOE1(1) <---   --------->ANAC46                                                          ------>ZmHOX2a(2)------>NtERF2   <---------ANAC55(2)                                                       =================HOX2a_HOX2a   <---------bZIP60(1)                                                      ==================HOX2a_HOX2a   --------->bZIP60(1)                                                      <------ZmHOX2a(2)<-------   --------->ANAC55(2)                <---------ANAC58                     <---------ARR14(2)-------- ------->GAMYB                     --------->GLK1(2)                ---------->DOF2     <-----------HVH21 -----At4g35610                 <---------ATHB12     <---------ARR11(3)    --------->ARR14(2)-------- --NtERF2              <---------ARR11(3)            --------->ARR11(3)  --------->DEAR3(1)------>NtERF2 -----ZAT2             --------->ARR11(3)<---------ZAT2            ----------->HVH21   ------>ZmHOX2a(1) ---->At4g35610        <---------GLK1(2) --------->ZAT2         ==============================HOX2a_HOX2a --->RAP2.6(2)       ----------->ARR10<---------ANAC58          ------>ZmHOX2a(2)    ----------->RAV1(2)   caacgacgtaacgcttgttaactgagattttccaacgattccgagctcgcgacaagatttcatcgatctgtaacgccgatctcggactcctgccaccgcc  5911500                            <---------ANAC58                            <---------ANAC58      <---------ICU4   <-----------RAV1(2)     --------->ICU4   <------NtERF2                                                  ------>ZmHOX2a(1) -------MYB52(1)     <-----------HVH21                  <---------ANAC46        --------->ABI4(2) ------>DOF5.7(2)    <-----------TGA1                   <---------ANAC58       <---------AtMYB61 -->ABI4(1)         <---------ANAC58                    <---------ANAC58    <---------ANAC58 >MYB46(3)          <---------bZIP60(1)   <-------GAMYB<------NtERF2        <---------ANAC46 >ATERF1(1)         <---------ANAC46     ------>ZmHOX2a(2)                 <---------LBD16 >DEAR3(2)          --------->bZIP60(1) <------ZmHOX2a(2)             <---------AHL20(2) >DEAR4(2)          <---------ANAC58   --------->ARR11(3)             --------->AHL20(2) ----GAMYB<---------At5g28300 <------NtERF2<---------MYB52(1)     ----------->GT1 --------->PCF5----- --------HVH21   ==============================HOX2a_HOX2a   <---------ANAC46  --------->ALFIN1------ --ALFIN1<-----------GT1    <---------ANAC46      <-----------RAV1(1)--------->AHL20(2)      <------- ->DEAR3(1)      ===============================HOX2a_HOX2a  <-----------RAV1(1)<---------MYB46(3) ->DREB2C(2)     ------>ZmHOX2a(1)     <---------ARR11(3) <---------MYB52(1)<---------ANAC58 <-------   gttagccatatttacggtcctggcgtcagggcgtagattgagatcgttgtctctggtgtcgttttgtgggattaaattgcggtggtcctcttcttcgtcc  5911600                    --------->ZAT2                    <---------At4g35610                    <---------ZAT2                  ------>NtERF2                 --------->DEAR3(1)           --------->AtMYB61           <---------ALFIN1            <-----------ARR10       --------->ZAT18                 --------->GLK1(2)      <---------ANAC58                <---------ARR14(2)      <---------ANAC58                <---------GLK1(2) ------>HVH21 --------->DEAR3(1)     --------->HSFB2a(1) --->SPL7  --------->DEAR3(1)        <---------HSFB2a(1) ----HVH21--------->MYB46(3)<---------YAB1               --------->TOE2(3) --SPL7<---------ZAT18      <---------ATHB12          <---------CCA1(2)               *TSS      <----   gacgagttgcgcaccatcgccgagctggtaatcaatgggagattcttctcagagtcaaatctcaaaattcaaaaactcgaaattcgatagaaaatgcgaa  5911700                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                        ----------->GT1                                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <---------ZAT14                                                                   <---------ZAT18                                                                   --------->ZAT14                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                  --------->DOF5.7(2)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                ------->GAMYBxxxxxxxxxxxxxxxx>smallRNA(i)                                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                              <---------At5g28300 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxx                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             <-----------GT1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)  <-----------GT1                                                           <xxxxxxxxxxxxxxxxsmallRNA(i) <-----------GT1                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxx                                                       xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxx                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)                      ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   ------------>MYB.PH3(1)             xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxx           --------->YAB1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i)           <---------ICU4          --------->TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->ICU4           --------->TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->AHL20(2)    <---------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ZAT6      --------->AHL20(2)<---------MYB52(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx -----KAN4(2)<---------YAB1 --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxx   taaacagattaaattatgagaaaactgttatttaatacctcaacttacaaagaatggccaaattaaccgtgaactcgtgaaatggccgttttaactctca  5911800                                              <------NtERF2                                              --------->At4g35610                                              <---------At4g35610                                             ----------->RAV1(1)                                           --------->At4g35610                                           <------NtERF2                                    ----------->HVH21                                    --------->WRKY45                                    --------->WRKY12                                    --------->WRKY38(1)                                   --------->DOF5.7(2)      --------->WRKY12           <---------ANAC46 --------->ATHB51  --------->DAG2                 <---------ANAC58 --------->ATHB12 ---------->DOF2               xxxxxxxxxxxxxxxx>smallRNA(i) x>smallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(s) x>smallRNA(le3)              xxxxxxxxxxxxxxxx>smallRNA(i)                                          < >smallRNA(se3)              xxxxxxxxxxxxxxxx>smallRNA(i)                                           - xxsmallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(s)                                           < xxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(s)                            <---------MYB52(1) xxsmallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(s)         ----- xxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxx>smallRNA(s)<---------WOX13(1)  <---------MYB52(1)  <-------- xx>smallRNA(si3)  <-----------GT1<-------GAMYB  --------->ICU4        <-------GAMYB    --------->ZAT14 xxsmallRNA(s)    <-----------GT1<---------ANAC58<---------YAB1       ----------->GT1 <---------YAB1-   acaaaaagttgacttctgttttaacattcaagtttgcgttgactcggcagcataattgacagacgttttagtccgttaaacatctgttactatagtctta  5911900         <---------ANAC46         <---------ANAC58                                                                       <---- ---------O2                                                                                   ------ -------->O2                                                      --------->ANAC46       <---------ICU4 ---------bZIP60(1)   --------->GLK1(1)                          --------->TOE1(3)       --------->YAB1 ---->SPL7     ---------->DOF2                                   --------->TOE2(3)      <---------ATHB12 -ZAT6   <---------ANAC58--------->YAB1                    --------->WOX13(1)      --------->TOE2(3) -------->bZIP60(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)       ------------>CBF   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   cgacgtcgttttcgtgctaaagagaaatcaaaatcgagaatagaaattctcaaaacaaaatcaattaccctaaacccaaatcgaaacttaatcatgcccc  5912000                                                                                     ------>ZmHOX2a(2)                                                                                   <---------ARR14(2)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                             <------ZmHOX2a(1)                                                                             --------->ATHB12     ---                                                                             ===============HOX2a_HOX2a                                                                         <---------ANAC46  <---------ATHB12                         ------------>CBF                            <-------GAMYB --------->ARR14(2)                       <---------ANAC58                            xxxxxxxxxxxxxxxx>smallRNA(i)   ---                       <---------ANAC58                          <---------bZIP60(1)--------->GLK1(1)                    <---------WOX13(1)                           <---------ANAC58  <---------AGP1 ---                   <------------CBF                              <---------ANAC58  <---------ARR11(3)   --------->YAB1 <---------ICU4                                 <---------ANAC46  --------->ARR11(3) --NtERF2      --------->TOE1(3)                <---------MYB52(1) <------NtERF2  <---------CCA1(2) >NtERF2       --------->TOE2(3)              *TSS               --------->bZIP60(1)<---------GLK1(1)   caaaatcaaaatcgaaaccctaattgcttcaattcgttttctgaaatgccattagttagaaagaatggcgtcgttgtgaggattggatctccaatgcttc  5912100                                       --------->DEAR3(1)             <------MYB83            --------->ABI4(1)                                 ------->TEIL             <------MYB46(1)        <---------ALFIN1                         ----------->GT1         --------->ARR14(2)         --------->DEAR3(1)                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ARR14(2)         --------->AtMYB61                      <---------ANAC58         --------->GLK1(2)         <---------ABI4(2)                       <---------ANAC58    <----- ------>ANAC58               ---------->DOF2    ---------->DOF2            <---------ANAC46    ------ ------>ANAC46              <---------REM1(1)<------ZmHOX2a(1)           --------->ALFIN1     <------ ------>ANAC58  <---------MYB46(3) --------->MYB46(3)--------->CCA1(2)  --------->ALFIN1      -------   acgaatcagagaatttggtgggagatggagttgaagcaccaccgcgaggagaaagagatgaaattggagaagaagttgggggtgaaacgaatgtggtatc  5912200  Previous    Next  AGI:  At1g17270.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G50420.1); similar to Os07g0572600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80219.1); contains domain PTHR13398 (PTHR13398) Range:  from: 5909242    to: 5911686    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17275.1    Description:  transposable element gene. Mutator-like transposase family, has a 5.8e-31 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 5912046    to: 5915306    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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