Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                         <---------ANAC46                                                                                   --------->ZAT6             --------->ANAC46                                                      <---------------AtSPL3             --------->ANAC58             ----------->RAV1(1)                ------>ZmHOX2a(1) ------             --------->ANAC58     <---------HSFB2a(2)  --------->TOE1(3)     --------------->AGL15     <---------AHL20(2)           --------->HSFB2a(2) --------->At4g35610    <---------------AGL15    --------->AHL20(2)    <-----------GT1--------->ANAC46                --------->ARR14(2) ---------   <---------YAB1      --------->CCA1(2) --------->ANAC58            <-----------GT1    ------------- --------->YAB1       --------->ARR11(3) --------->bZIP60(2)     <---------YAB1  <-----------GT1 -------->AHL20(2)    <---------ARR11(3) --------->ANAC58 ---------->DOF2<---------ARR14(2)--------->DOF5.7(2)   catttattatataagacgaaacaagatatatccattctcgaccacgacattggattagcttaaagttatttttagtatcctataaacagtaccgtaaacg  5878000      --------->AtLEC2   <---------ATHB12 ->MYB52(1)                                                                                       --- --DOF5.7(2)                                                                                 -------- -WRKY12                                                         --------->MYB52(1)          -------- -ARR14(2)                                                    --------->At4g35610          <---------ZAT14 --->ANAC46         <----------DOF2                     ----------->ARR10                  --------->ZAT14 >ARR14(2)   --------->ATHB12        ------>MYB46(1) <---------ANAC46                 <---------ZAT14 ---->AGL1  <---------ATHB12         ------>MYB83 <-----------RAV1(1) <---------GLK1(2) <---------ANAC46   gagcaatcttgcaaatcatttgcttcaagttcaaaaacctatctagggttctctggtggagatgtgctaactgattttctaacttgagtttagtatagta  5878100                          --------->CCA1(2)                       <---------TOE1(3)              -------->HAHB4                       <---------TOE2(3)              <---------ICU4              <---------ANAC46                        --------->ATHB12              <---------ANAC58                       <---------YAB1   --------->ZAT14    ---------->ID1  <---------AHL20(2)               <---------ATHB12 <---------ZAT14    --------->ANAC46 ------>ICU4  <---------ANAC58                       --------->ICU4<---------ANAC46     <---------LBD16 --->GT1     ---------->ID1                   ---------->DOF2  --------->YAB1   --------->ARR11(3) ->YAB1     <-----------GT1           <------ZmHOX2a(1)       <---------ATHB12  <---------ARR11(3)   atttttgttttttttttcgtattttaagatttgaactgaaggatttagaaaagaaatgattccaatcttgagtatagagagagaccttcatacggagtat  5878200                                                     <---------ANAC46                                                     <---------LBD16                                       --------->ARR11(3)                                       <---------ARR11(3)                                       --------->AHL20(1)                             <---------ANAC58       <---------LBD16                             <---------ANAC58 <----------DOF2           <---------YAB1  <---------ZAT14    <---------DAG2          --------->AHL20(2) <---------ANAC46<---------ANAC58                                  <-----         --------->YAB1    --------->ZAT18   <---------ANAC58                                  <-----     --------->AHL20(2)    --------->ZAT14 <-----------GT1      --------->YAB1 --------->AHL20(2)    <---------ATHB12  <---------ZAT14  <---------AHL20(1)      <---------YAB1<----------DOF2   <-----   attacaatgaattataatctagattgtagtggagtgatcaatattttgctttttagcggggagttatcattttcgaaggctttaaatgtttttttttgct  5878300                                              ------>MYB83                                              ------>MYB46(1)                                              -------->P                                             --------->MYB55(1)                                            --------->DEAR3(1)                                            <---------MYB111(1)                                            <---------ALFIN1                                            --------->MYB46(3)                                            <---------MYB46(2)                                            <---------MYB55(2)                                            --------->AtMYB61                                    <---                  <---------YAB1            <---------MYB111(2)                                  ----          <------ZmHOX2a(1)                --------->MYB46(3)         <---------MYB52(1)      -------  <---------GLK1(1)  ------->TEIL   <-------TEIL------->GAMYB        <----------DOF2     <---------AHL20(2) ----ANAC58       --------->ICU4<---------AHL20(2)           <---------ALFIN1            --------->AHL20(2) ----ANAC46<---------ANAC58    --------->AHL20(2)          ----------->RAV1(1)     <---------ALFIN1 ----ANAC58<---------ANAC58    <---------AHL20(2)       <------ZmHOX2a(2)      <-----------HVH21<----   tgggaaatgtgaggagtgtcatgaatatcgaaattaaatgcattcaccaaccctatcgatccaacacttccctttagttaatgtcacacattaaaatcat  5878400                                                                                                    <                                                                                                    -                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                 ----------->GT1                                <----     *TSS                                       ----------->GT1                                 ----- ------ARR14(2)                       ---------->DOF2                                    ---------->DOF2 ----->ARR14(2)                  <---------------AGL15                                   ============ -->YAB1   <-----------GT1       --------->TOE2(3)                  ---------->DOF2 ----------->GT1<- -----CCA1(2) ------->GAMYB     ----------------->AGL3  ---------->DOF2  --------->GLK1(2)--------->DAG2   atccacttgtttataaccacattttctctcaaaatccataaaaagagagagagataaataaagagaaaactaaagaagctagaagatggagaaaagtaat  5878500                              --------->MYB55(2)                              <---------MYB46(3)                           --------->LBD16                         <------NtERF2                         <-----------RAV1(2)                         <---------LBD16                        ------>NtERF2                       <---------ARR14(2)                       --------->ARR14(2)                      <---------At4g35610                      --------->At4g35610                      <---------ZAT2                      --------->RAP2.3(1)                      --------->ATERF1(1)                      <------NtERF2                      <---------ABI4(2)                     --------->ABI4(2)                     <---------DEAR3(2)                     <---------MYB46(3)                     <---------RAP2.3(1)                     <---------ORA47(2)                     <---------ERF1                     ------>NtERF2                     <---------ATERF1(1)                     <---------RAP2.6(1)                     <---------DEAR4(2)                     <---------RRTF1(1)                    <---------DEAR3(1)                    <---------RAP2.3(3)                    <---------RAP2.3(2)                    <---------RRTF1(3)                    <---------RAP2.6(2)  --------->LBD16  <---------YAB1   --------->RAP2.6(3) <---------LBD16                                             <- ---------ICU4    <---------ATERF1(1)<------NtERF2                                                 -- -------->YAB1   --------->TGA1a--------->ALFIN1                                                   <- ------>ARR11(3) <---------TGA1a<---------AtMYB61                                                 --- -------ARR11(3) <---------DEAR3(1)  ----------->HVH21                      --------->MYB46(3)    --- ------ICU4      --------->O2<---------DEAR3(1)                            --------->ZAT2         --- ---->HAHB4      --------->ANAC46<---------MYB46(3)                       <---------ARR14(2)    <---- ----->YAB1      <---------O2--------->ALFIN1                        --------->ARR14(2)         <---- -----YAB1  --------->ANAC58 <---------AtMYB61  --------->ALFIN1     --------->GLK1(2)         <----- ---->ICU4  --------->ANAC58<---------MYB52(1)<---------O2           <---------ARR14(2)        <----- ==========================bZIP_DOF ------>NtERF2               <---------LBD16  ------>NtERF2------- --------YAB1   <---------LBD16 <---------DEAR3(1)    <------ZmHOX2a(1)   --------->ARR14(2)<--------   gatcatgacaaggctagccacggcggctccggtggtggtgccacggagaagtgggaggagactagcctcggaatccgaactgccgagacaatgctccggt  5878600           <----------DOF2        ----------->TCP11(1)     <---------MYB52(1)    --------->LBD16  <---------LBD16 --------ZAT2 ------->At4g35610 --------At4g35610 ------>MYB52(2) -------->ARR10 ------>MYB59                                                              <---------ANAC58 -----MYB52(1)                                                             <---------ANAC58 ----P--------->ALFIN1                                                   <---------ARR11(3)       --- ----MYB52(1)   <-----------RAV1(1) --------->ICU4               <---------DEAR3(2)               <-- ------HVH21<----------DOF2         <---------YAB1               <------MYB46(1)                <---- -->LBD16<---------PCF2<---------At4g35610                       <------MYB83                  <----- -LBD16--------->ABI4(2)<---------ALFIN1    <------ZmHOX2a(1)   --------->MYB59               <------   tagctccggtgggcctttgtgttgcagcacttgttgtcatgcttaaggactctgagactaatgagttcggttcaatttcttactccaatctcacagcctt  5878700      ------->TEIL      <-----------ARR10      <---------ARR14(2)      --------->ARR14(2)      <---------ARR11(1)     <---------ARR14(1)     <---------CCA1(2)   --------->ANAC55(2)   <---------ANAC58   <---------ANAC55(2)   --------->ANAC58   --------->ANAC58   <---------ANAC58  <-------TEIL ------>MYB59                                      <---------ZAT6 -------------AtSPL3                               ----------->GT1                 <---------TOE2(3) -----MYB52(1)              <-----------GT1   <---------REM1(1)                    <---------TOE1(3) -----DOF2             --------->AHL20(1)    --------->ARR11(3)              <---------YAB1 ----DOF2       --------->AtLEC2             <---------ARR11(3)            <-----------GT1  <--------   taggtacgtatcttctccatacacatatattaactgttcatcttcaagatgtagagttatttcttcttgcatactatttacaattagggtttatatgttg  5878800          <---------ANAC46       --------->ALFIN1     --------->ALFIN1                      >>>>>>>ZML2     <---------bZIP60(2)                --------->ARR11(3)     <---------ANAC46                --------->DAG2     <---------ANAC58        --------->ANAC58     <---------ANAC58        --------->ANAC46                           <-------TEIL               <-  <---------AtMYB61          --------->ANAC58 <---------ZAT6  --------->At5g28300                  -- ---RAV1(1)   --------->HSFC1(2)    ---------->DOF2       --------->MYB52(1)<-------TEIL    <--------   tgagatggtgtggcgaagtttcacatgaaacacacaaaaaaagttctagttttaagaaactgactgtaactatgtgcatacatattagtatattacatat  5878900  Previous    Next  AGI:  At1g17200.1    Description:  integral membrane family protein. Identical to UPF0497 membrane protein At1g17200 [Arabidopsis Thaliana] (GB:Q8VZQ3;GB:Q9SHH9); similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT3G14380.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46739.1); contains InterPro domain Conserved hypothetical protein CHP01569, trans-membrane plant (InterPro:IPR006459); contains InterPro domain Protein of unknown function DUF588 (InterPro:IPR006702) Range:  from: 5878405    to: 5880034    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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