Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->AtLEC2                   --------->RAP2.6(3)            ------>NtERF2                  <---------ARR14(2)             --------->ANAC58                  --------->ARR14(2)             --------->ANAC58             --------->ARR14(2)                  --------->ANAC46             <---------ARR11(3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->GLK1(2)                  --------->MYB46(3)             <---------ARR14(2)               -------->P                                      <------    <---------TOE2(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->ANAC58 <---------YAB1   --------->MYB52(1)        ------>ZmHOX2a(1)                    --------->ANAC58 -----At4g35610  ------>ZmHOX2a(1)--------->YAB1<---------LBD16  ----------->GT1 --------->ANAC46   atgataaatgttgaaaatcctatcggcattgatcaaaaatactgtccttacccgccatgcagcaatatggtaacttactatgcaagaaacaaatttctat  5867200                                                                                     --------->ZAT6                                                                                  ----------->HVH21                                                                                --------->O2                                                                                <---------ANAC55(2)                                                                                =====================                                                                                --------->ANAC55(2)                                                                          ------>ZmHOX2a(2)                                                                         --------->CCA1(2)                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                        --------->AGP1   ---------->DOF2                                                                       <---------At4g35610        --------->YAB1                                     --------->GLK1(2)    ====================bZIP_DOF      --------->GLK1(2)                                   --------->ARR14(2)    --------->TGA1a      --------->ARR14(2)                                  <---------ARR14(2)    <---------O2      --------->ARR11(3)                                  <---------GLK1(2)--------->ANAC46      <---------ARR14(2)                                 <---------HSFB2a(1)    <---------TGA1a     <---------GLK1(2)     <-----------GT1               --------->HSFB2a(1)    ===================== ---CCA1(2)       <----------DOF2  --------->MYB52(2)   ----------->ARR10<------ZmHOX2a(2)          <   cttcttagaatcttcatcgactttaaaattaacatgttagttcatgttttatcgcagggagattctcacattcagatccgaaacgtgacactaaagaaca  5867300                        <---------ANAC46                             ----------->GT1                     --------->ALFIN1                          --------->ARR11(3)                  --------->DAG2                           ---------->DOF2          ---------->DOF2 --------->At5g28300           --------->AtLEC2   <---------WOX13(1) ===========================bZIP_DOF                  <---------ANAC58  <---------AHL20(2) ====================bZIP_DOF                         <---------ANAC58 <---------MYB52(1) ---------LBD16  ---------->DOF2                 <---------DAG2<---------ARR11(3)   tttggggaacatcaaagaataaagtggctgtgaaatttcaatgtagcaaaacctttccttgcaaagatgttcagttaattgacattaacttaactcacca  5867400                         <---------ANAC46                         <---------ANAC58                       <---------ANAC46                              --------->LBD16                    <---------ANAC58        ------>ZmHOX2a(2)      <---------LBD16                   <-------TEIL             =============================HOX2a_HOX2a                 ------->PIF5              <---------GLK1(1)      ===========================HOX2a_HOX2a                 <-------PIF5              <---------At4g35610    ------>ZmHOX2a(1)            --------->AtLEC2              <---------ARR11(3)  <---------ARR14(2)            ------>ZmHOX2a(1)             ------->TEIL        --------->ARR14(2)       <---------DEAR3(2)<---------ANAC58 --------->ARR11(3)--------->HSFC1(2)   --------->ETT(2)--------->ZAT18        --------->ARR14(2)<---------HSFC1(2)   <---------WRKY38(1)<---------MYB52(1)  <---------AGP1    <---------MYB46(3)   ----------->HVH21<---------ANAC58      <---------ARR14(2)<---------HSFB2a(1)                 -----  --------->ATERF1(1)<-------GAMYB     <---------WOX13(1)   --------->HSFB2a(1)       ------>ZmHOX2a(2)   tggagtcgacggtcctgcaagtgcgttgtgtgagaacgttgatggatctgctactgggaagatggttcctccgcattgtctaagttgatccagtccaaac  5867500                                                      <---------ICU4                                                      --------->YAB1                                                     <---------YAB1                                                    <---------ARR11(3)                                                   <---------ICU4                                                   --------->YAB1                                                   -------->HAHB4                                                  --------->ICU4                        <---------AHL20(2)                                                 <---------TOE2(3)         --------->TOE2(3)                                                --------->YAB1             <----------DOF2         --                                     ----------->TBP--------->ARR11(3)  <---------ARR11(3)        <--                                     <---------AHL20(2)                 --------->ARR11(3)        ---       ------->TEIL    <---------AHL20(2)    --------->TOE2(3)         <---------CCA1(2)--------->AHL20(2) ---->YAB1         <---------AHL20(2)--------->AHL20(2)    --------->MYB46(3)           <---------YAB1   atagtcatgtactcatgttgtttattttttggttaacatataaataacattaatgatcataacaaacatggatatatctttaacttacatataattctca  5867600                                                                                --------->GLK1(1)                                                                                <------ZmHOX2a(2)                                                                                <---------GLK1(1)                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)                            --------->TGA2(1)                            ---------->DOF2             <------MYB46(1)<---------TGA2(1)                          <---------YAB1             <------MYB83   --------->bZIP60(1)                      --------->YAB1             <---------MYB46(3)--------->MYB52(1)         --------->AHL20(2)   <---------ARR14(2)         <---------MYB46(3) <---------bZIP60(1) --------->ANAC58    --------->ICU4 ------->CCA1(2)            *TSS---------->DOF2 <----------ID1 --------->MYB52(1)        <---------GLK1(2) -------ARR14(2)         ----------->HVH21      --------->ANAC58<---------TOE2(3)------>ZmHOX2a(2) ------>ARR14(2)       ----------->GT1        ---------->DOF2<---------MYB52(2)--------->ARR14(2)<---   gatatgtttagttgttggttctgagttgtgacataacagcgatttcataaaagccaaaaatcaaataacgatgatgaaagggatctcttcagtttctcaa  5867700                                                   <---------ZAT14                                                   --------->ZAT14                                              <------ZmHOX2a(2)                                            <---------At4g35610        <---------YAB1                      --------->At4g35610      --------->ZAT2             <----       --------->AHL20(2)               <-----------HVH21            --------->At4g35610  --------->DEAR3(1)      --------->YAB1                  --------->ZAT2 ----------->GT1 <---------ZAT2    --------->ANAC46     <---------ATHB51                 <---------At4g35610       --------->ARR14(2)    <---------LBD16   --------->WOX13(1)                 <---------ZAT2 <---------ZAT6  <---------At4g35610------>NtERF2 <------ZmHOX2a(2)                    --------->At4g35610       <---------ARR14(2)  <-----------GT1 ------ATHB12                      <---------At4g35610    <---------ARR14(2)       <-----------GT1   tcgatcaattataatccatacatcgaattcaatcgaccgcagcttcagatcagtactgtgaatcccaatccagctcaatctcgattttcccgccctcgat  5867800                                                                         <---------ATERF1(1)                                                                         --------->ABI4(1)                                                                        --------->DEAR3(1)                                                                        --------->DREB2C(2)                                                                        <---------ATERF1(2)                                                                        --------->RRTF1(2)                                                                        --------->RAP2.6(2)                                                                        --------->RAP2.3(2)                                                                        --------->ATERF1(2)                                                                        --------->ANAC46                                                                        --------->RAP2.3(3)                                                                        --------->ANAC58                                                                        --------->RRTF1(3)                                                                        --------->ANAC58                                                                       --------->RAP2.3(1)                                                                       --------->ORA47(2)                                                                       --------->ERF1                                                                       --------->DEAR4(2)                                                                       <------NtERF2                                                                       --------->ATERF1(1)                                                                       --------->RAP2.6(1)                                                                       --------->RRTF1(1)                                                                      <---------ATERF1(1)                                                                      ------>NtERF2                                                                     --------->ANAC46        ------>ZmHOX2a(2)                                                                    <-------MYC2            ---------                                                                    ------->MYC2            <--------                                                                    ------->MYC3            <------ZmHOX2a(2)                                                                    <-------MYC3            ---------                                                          --------->WRKY12<------NtERF2     <--------                                                          ----------->HVH21                --------->ARR14(2)                                                          --------->WRKY38(1)              <---------ARR14(2)                         ============================HOX2a_HOX2a   --------->ANAC58        --------->ARR11(3)                         <------ZmHOX2a(2)               <---------MYB52(1)       <---------MYB46(3)                        <---------ARR14(2)               --------->DOF5.7(2)      --------->MYB55(2)                        --------->ARR14(2)    ------>ZmHOX2a(1)    --------->ANAC58  <---------MYB46(3)     --------->ZAT14  --------->DEAR3(1)     --------->TOE2(3)     --------->ANAC46<-------GAMYB   --------->LBD16  ------>NtERF2         --------->ARR14(2)     <---------ALFIN1<---------AtMYB61  -  <---------ANAC58  <---------At4g35610   --------->GLK1(1)<---------DOF5.7(2)<-----------RAV1(1)   -  <---------ANAC46  --------->LBD16 <---------ARR14(2)  --------->At4g35610<---------ALFIN1<---------ARR11(3)  <---------ANAC58 --------->DEAR3(1)     <---------ARR14(2)   <---------ALFIN1 <---------MYB52(1) -- --ZmHOX2a(2)      --------->ANAC46 --------->ARR14(2) <---------MYB46(3)------>NtERF2 <---------ANAC46   ccctccgtgttctctcactctccgccgatccatcggcaaatcggaatcctaaatcagccgttgacgcacacgcgccgccactggtggttgtgggatctgc  5867900       --------->ARR11(3)       <---------ARR11(3)                                                                      <-----      --------->GLK1(1)                                                                    ------>NtERF2      <---------CCA1(2)                                                                   <---------ANAC46     <---------MYB52(1)                                                                --------->DAG2 >At4g35610                                                                          ---------->DOF2 -GLK1(1)                          --------->ANAC46                                  ================ >GLK1(1)                          --------->ANAC58        --------->ANAC58        <------ZmHOX2a(1)- -At4g35610         <------ZmHOX2a(2)                      --------->ANAC58     <------NtERF2  ------ -------->ANAC58   <---------ARR14(2)                  ------>NtERF2           --------->LBD16 ------ -------->ANAC58   --------->ARR11(3)       <---------ARR14(2)                --------->DEAR3(1) <--- ------->SPL7 --------->ALFIN1     --------->ANAC58  <---------RAP2.6(2)     <---------LBD16<------NtERF2   gaacgccgatatctatgtggagatcgagagattacccaaggaaggggaaacgatttcggccaagacagggcaaacgctcgccggaggaaaaggcgcgaat  5868000           <---------ANAC46        --------->ALFIN1       --------->REM1(2)      --------->ALFIN1    <---------ANAC58    --------->O2    <---------ANAC58    --------->TGA1a    <---------O2    <---------ANAC46    <---------TGA1a   <------NtERF2                                                                                    <   --------->ATERF1(1)                                                                              <  <---------DEAR4(2)                                                                            -----  <---------ORA47(2)                                                                           ------  ------>NtERF2                                                                                <-----  <---------ERF1                                                       <---------At4g35610     ------  <---------RAP2.3(1)                                                 --------->ANAC58      <-------- <---------RAP2.3(3)                                                  --------->ANAC58   <---------MYB46(3) <---------DEAR3(1)                                   --------->At4g35610              <---------MYB52(1) <---------RAP2.3(2)                      <------MYB46(1)<------ZmHOX2a(1)             --------->ALFIN1 ----ARR14(2)                             <---------MYB46(3)  --------->ZAT18        <---------ANAC46 =============bZIP_DOF                    <------MYB83<---------At4g35610            <---------ANAC58 -------->ATERF1(1)      <---------ARR14(2)    <---------MYB52(1)--------->ANAC58    --------->ALFIN1 --->ARR14(2)            --------->ARR14(2)  <---------MYB46(3)  --------->ANAC58    <---------ANAC58 --->GLK1(2)             ------->TEIL    <---------AtMYB61   --------->ANAC58 --------->At4g35610   < --------RAV1(2)     <---------TOE2(3)  <---------MYB52(1)   --------->ANAC58 <---------At4g35610  <-   caggcggcgtgtggagcgaagctaatgtatccgacttacttcgttggtcgtttgggagaggacgcgcacgggaagctaatagctgaggcgttgggcgatg  5868100  Previous    Next  AGI:  At1g17150.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G26620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41851.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 5865700    to: 5867488    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g17160.1    Description:  pfkB-type carbohydrate kinase family protein. similar to hypothetical protein [Vitis vinifera] (GB:CAN73058.1); contains InterPro domain Carbohydrate/purine kinase (InterPro:IPR011611); contains InterPro domain Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173) Range:  from: 5867628    to: 5869349    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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