Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <---------ANAC58                                                         <---------ANAC58                                                        <-------TEIL                                                     --------->HSFB2a(1)                                                     <---------HSFC1(2)                                                     <---------HSFB2a(1)                                                     --------->KAN4(1)                                                     --------->HSFC1(2)                     >>>>>>>>>         --------->TOE2(3)                           <---------KAN4(1)              --------->AHL20(1)   <---------YAB1                                   <---------KAN4(2)              --------->YAB1 --------->YAB1                                   <------ZmHOX2a(1)                --------->AHL20(2) --------->GT1                ---------->DOF2   <---------TOE2(3)               --------->YAB1 --->ARR11(3)        --------->ANAC58           --------->ANAC46        <---------ANAC58    --------- --->GLK1(2)         --------->ANAC58  <-----------GT1--------->KAN4(2) <---------ANAC58  <----------   ctagtataatacattaatgcattaagcaaaaaaaaagaagttcaccttctaaggaacattcgtgtttcacataggcttgagataataatattaaacccaa  5863600                                                                                       <---------CCA1(2)                                  <---------YAB1                                       --------->At4g35610                                --------->ATHB51                                       <---------At4g35610                                -------->ATHB1                               --------->MYB52(1)                                <---------ICU4                              ------>NtERF2                                <--------HAHB4                              <---------SPL7                                --------->ATHB12                            --------->ORA47(1)                         --------->MYB52(1)                                --------->DEAR3(1) >>>>>>>>LFY          <---------------AtSPL8               <---------ATHB12----------->HVH21 >ANAC46    <---------ANAC46   --------->ICU4       ----------->HVH21     --------->ORA47(2) -GT1 <---------YAB1 ---------->DOF2        <---------WRKY38(1)  <-----------GT1    <------NtERF2   tgggccttaatattgtgggaaaaaaaagaacgaattattagtctagtcaatggtctgaccaaagattatacaattcgccgaccggaggcatctctctgaa  5863700                                                           --------->At4g35610               --------                                                       <---------ARR14(2)                <---------WRKY18(1)                                                  ----------->RAV1(1)                   --------->WRKY12                                                ------>NtERF2                           --------->WRKY38(1)                       --------->REM1(1)       --------->ANAC46                    --------->SPL7                       <---------ALFIN1        --------->ANAC58                    ------->TEIL              <---------MYB52(1)               --------->ANAC58        <---------ICU4   ----------->HVH21             <-----------HVH21    <---------At4g35610  --------->ARR14(2)      <------NtERF2 --------          ----------------------->TaNAC69(2)  --------->SPL7         ------->TEIL<---------SPL7        <---------GLK1(1)    <----------DOF2 ------>ZmHOX2a(1)    <---------YAB1--------->DEAR3(1)   --------->MYB52(1)  --------->ANAC46<----------DOF2 --------->MYB52(1)     ------>NtERF2<---------LBD16   aaaactatcgaactccgtcgtctctacacctctttctgcttcttttcctacgccacaaaaccgctgtgatgaatctttgccaccgtacccttgaccggag  5863800                         <---------ANAC58                         <---------ANAC46                    ------>NtERF2                  --------->ATERF1(1)                 <---------ATERF1(1)                 ------>NtERF2                --------->DEAR3(1)                ----------->HVH21                <---------DEAR3(1)               <------NtERF2               --------->ATERF1(1)              <---------DEAR3(2)              ------>NtERF2              <---------RAP2.3(1)              <---------ATERF1(1)             <---------At1g77200                                        --------->At4g35610             <---------DEAR3(1)                                         <---------At4g35610       <------ZmHOX2a(1) <---------ANAC58                              --------->GLK1(2)    <---------ICU4<------NtERF2          --------->ARR11(3)        --------->LBD16       <---------ANAC46 --------->YAB1--------->RAP2.3(1)  <-----------HVH21         --------->At4g35610      <---------ANAC46 ->LBD16   <-----------HVH21      --------->TOE2(2)           <---------ZAT2       <---------SPL7 --->GT1 --------->DEAR3(2)    <-----------GT1                <---------At4g35610------->TEIL   <----   aattcataaggaccgtcggcgacgactgcgtttttacctgtgagttcttgaacaattgtcttgaagctccgagcatctgtctgaacgtactgtgtgttaa  5863900                       ------>ZmHOX2a(2)                       ===============HOX2a_HOX2a                      --------->GLK1(1)                      <------ZmHOX2a(2)                      ================HOX2a_HOX2a                     --------->ARR14(2)                     <---------ARR11(3)                     <-----------ARR10                     --------->ARR11(3)                     <---------AGP1                     <---------ARR14(2)                     --------->AGP1                         <---------RVE1(1)                    <---------At4g35610                     <---------CCA1(1)                    <---------CCA1(2)           <---------ANAC46                 <-------TEIL                  ---------->ID1                 <----------DOF2              <---------MYB46(3)--------->At4g35610        <---------ARR11(3) <---------------AGL15       --------->TOE1(3)       ------>ZmHOX2a(1)<---------ANAC58   <----------DOF2              <----       --------->TOE2(3)     ----------->RAV1(2)<---------ANAC58<-----------GT1                <----- -----TOE2(3) <---------DEAR3(2)<---------At4g35610        --------->ARR11(3) --------------->AGL15   tgaagacaaccttcatcggttcagatctcactcctgcagacatatttttggcgttatatgagattttttcttttggtttgctctattgagtagtatgcct  5864000                                                           <---------AHL20(2)                                                          --------->YAB1                                                         <---------AHL20(2)                                                        --------->AHL20(2)                 <---------ANAC46                    --------->AHL20(2)                   <---------AHL20(2)                 <---------ANAC58                   <---------AHL20(1)                    --------->AHL20(2)                 <---------ANAC58                   --------->ARR11(3)                --------->YAB1             <------------CBF                       <---------ARR11(3)               <---------YAB1           --------->ARR14(2)             --------->ARR11(3)                        <-----------GT1         --------->LBD16 --------->AHL20(2)   ----------->GT1                   <----------DOF2  *TSS  --------->LBD16<-----------TBP    --------->AHL20(1)                 ------>MYB46(1)<--------  ------->TEIL  <---------MYB46(3)       --------->AHL20(2)<---------AHL20(1)------>MYB83 --------->AHL20(1) ------DOF2<---------ARR14(2)     ----------->GT1  <-----------TBP         <---------MYB59<---------AHL20(1) ----DAG2--------->ANAC46<---------AHL20(2)--------->CCA1(2)      <---------ANAC46 --------->YAB1   tttgaatctccccgatattggttgtatttatatgtgtagataaatatatgggaatatatataatatttgtggggagaccgaacttttatcattttattga  5864100                                                                                  <---------AHL20(2)                                   --------->GLK1(1)                            <----------DOF2                            --------->YAB1       <---------YAB1              --------->GLK1(2)                           <---------YAB1      <---------ZAT6               <---------GLK1(2)                         --------->YAB1       <---------YAB1                <---------ARR14(2)                        <---------YAB1      <---------ICU4                  --------->ARR14(2)    ---                      --------->YAB1       --------->ICU4                 ----------->ARR10       --- ----CBF             --------->AHL20(2) ------>ZmHOX2a(1)               <---------At4g35610       <--   tttttagttattgtttagaaacatttattatcatggggactcctaattagtattatgaactatatggataagagagcagattcttttattgatatagcat  5864200                                                                                    --------->ALFIN1                                                                                   --------->REM1(2)                                                                                  --------->ALFIN1                                                                                <---------ANAC58                                                                                <---------ANAC55(2)                                                                                <---------ANAC55(1)                                                                                <---------O2                                                                                --------->O2                                                                                --------->ANAC55(2)                                                                                <---------ANAC46                                                                   --------->HSFB2a(2)                                                                   <---------HSFC1(1)                                                                   <---------HSFB2a(2)                                                        <---------RVE1(1)       =====================                                         <---------AHL20(2)        --------->HSFC1(1)           --------->TOE2(3)            --------->AHL20(2)   <---------YAB1     <---------ANAC58       <---------CCA1(2)            <---------AHL20(2)  <---------CCA1(1)       --------->TGA1a ------>YAB1                ---------->DOF2            <---------ARR11(3)       <---------TGA1a ----- ------>AHL20(2)      <---------ANAC46 <---------YAB1  --------->ARR11(3)   <---------ANAC58   <----- -------AHL20(2)   <---------ANAC46 <---------YAB1    --------->YAB1        <---------ANAC58<--------   ttatattctatatccatagttgtggattggaaaagaatattattatatagatcgaatgatattttgattctagaaattgcttacgtgtggagttacgatc  5864300                                      <---------GLK1(1)                                      --------->CCA1(2)                                     --------->ARR11(3)               ---------->DOF2               --------->ICU4 --------->ICU4                         --------->AHL20(2)   <----------DOF2     --------->AHL20(2)                            <---------AHL20(2) =============bZIP_DOF <---------AHL20(2)<---------LBD16         <---------------AGL15 ---->YAB1     <---------ATHB12--------->ATHB12 --------->ALFIN1 --------------->AGL15 -ZmHOX2a(2) <---------ICU4   <---------YAB1  --------->ALFIN1--------->ZAT6               <---------ATHB12 -YAB1--------->YAB1   --------->YAB1<---------ARR11(3)    <-----------GT1    --------->YAB1   atatgctttcatgactaatgactaattatatactgattagatatcagggagtggctcaaattttccactatttaaagaaattagaatcaactaatcaaac  5864400                                                                             ------->GAMYB                                          --------->ARR11(3)               --------->At4g35610                                          <---------ARR11(3)               <---------At4g35610                                       --------->AHL20(2)                <---------WRKY38(1)                                    --------->YAB1                       <---------WRKY12                                   <---------AHL20(2)                  <--------ZAP1                                  --------->AHL20(2)                   <-----------HVH21       ------                               <---------ANAC46                    <---------ANAC46            <-----   <-----------GT1   <---------ATHB12  <---------AHL20(2)       --------->MYB46(3)         <---------   gttttttaccaaaaaaaaaactaatcaaacgttgcatataataaaatctattttagagtttttgtaacgacggggtcaactgaaactggagattgtcact  5864500  Previous    Next  AGI:  At1g17147.1    Description:  similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT1G78410.1); similar to Avr9/Cf-9 rapidly elicited protein 169 [Nicotiana tabacum] (GB:AAG43552.1); contains InterPro domain VQ (InterPro:IPR008889) Range:  from: 5863424    to: 5864002    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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