Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                              -------                                                                                             --------                             <-----------GT1                                                 <-------      <---------YAB1   ----------->GT1                  ------->GAMYB                        --------  <----------DOF2    <---------ANAC58                 -------->P                          <------ZmHOX2a(2) >ARR11(3)           <---------ANAC58         ---------->DOF2                            --------->ARR14(2) -ARR11(3)       ---------->DOF2    <---------YAB1  --------->MYB46(3)                   <---------ARR14(2)   caaactttataattctcatcaaagcttgttataacattttgattaaaacaaagaacaaccccaaaacttgtttctatagctaaacaaacacgatcccgta  5841200                                                                                                 <---                                                                                                -----                                                                                              -------        --------->GLK1(2)             <---------AHL20(2)                                      <------       <---------GLK1(2)             --------->AHL20(2)              <---------ARR14(2)      --------    --------->YAB1               <---------YAB1                      --------->ARR14(2)     --------- ------->YAB1                  --------->ZAT6                        --------->GLK1(2)     <---------GLK1(2) -->LBD16                   <---------ICU4               --------->TOE2(3) <---------------AGL15----- ->ANAC55(2)                --------->YAB1               --------->TOE1(3) ========================== --ANAC55(2)           <---------ATHB12    <-----------GT1          <---------CCA1(2)   --------->YAB1 ->ANAC46              <---------YAB1<---------AHL20(2)  <---------MYB59 --------->At4g35610<--------   atcaaattagaatcttatgaagacaatgaatgatcactattaattttacaacagttcaacctaaattcccaaatctgctaaaatatgaaatcagaatatc  5841300                                                                                 <------NtERF2                                                                                 <-----------RAV1(2)                                                                               <---------ANAC46                                                                              --------->RAP2.3(1)                                                                              --------->ATERF1(1)                                                                          <---------O2                                                                          --------->O2                                                                          <---------TGA1a                                                                          --------->TGA1a                                                                     --------->ANAC46                                                                     --------->ANAC58                                                                   <---------DOF5.7(2)                                                                   =================bZIP_DOF                                                                   ---------->DOF2                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                 --------->DOF5.7(2)                                                               --------->YAB1<---------ATERF1(1)     <------ZmHOX2a(1)                                      <---------GLK1(2)<---------ORA47(2) ------------AGL15                                        --------->LBD16 --------->At4g35610 ------------>AG                                         <---------HSFB2a(2)--------->ALFIN1 -->ARR14(2)     ----------->RAV1(2)                 --------->GLK1(1)    <---------At4g35610 ---ARR14(2)    --------->MYB52(1)                   <---------GLK1(1)    --------->ZAT2       ------ ->GLK1(1)      -------->P                           <---------At4g35610  <---------ZAT2       <----- ->TaMYB80   <---------At4g35610               --------->ICU4--------->GLK1(2)<------NtERF2   ------- ------------>AGL1<---------LBD16         ----------->GT1--------->HSFB2a(2)<---------DEAR3(1)<------ =============MADS_MADS         --------->GLK1(1)    --------->At4g35610<-----------RAV1(2)  <------ZmHOX2a(1) -KAN4(2)    --------->At4g35610<---------GLK1(1)  <------ZmHOX2a(1) --------->ANAC58      <---------TOE2(3)   caatacaggaagtgaagctacctggaacagtttgatatccatgagcgtaataaggagctccagaatcgtaaacgccaggtggcgcagaaggttgaggaaa  5841400                           <---------ANAC46                          <------NtERF2                          --------->ATERF1(1)                         <---------SPL7                        <---------ANAC46                        --------->ALFIN1                        <---------DEAR3(1)                       ------>NtERF2                       <------NtERF2                       --------->ATERF1(1)                       <---------At4g35610                       <---------LBD16                      <---------RAP2.3(1)                      <---------RRTF1(1)                     <---------RRTF1(2)                     <---------DEAR3(1)          --------->At4g35610 --------->At5g28300                                                   <          <---------At4g35610----------->GT1                                                    <----       --------->LBD16------>NtERF2                                                             -----     <---------LBD16 <---------RAP2.3(2)                               <---------MYB46(3)   ---------  ----------->HVH21 --------->At4g35610                       --------->YAB1                <-------- <-----------HVH21  <---------At4g35610                 <---------ANAC46                   --------->GLK1(1) --->GLK1(1)        <---------LBD16               <---------------AtSPL8               --------->ANAC58 ----GLK1(1)       <-----------RAV1(1)            <---------------AtSPL3  <-----------GT1  <---------GLK1(1) -->ARR14(2)   --------->GLK1(1)                ---------->DOF2<---------TOE2(3)       --------->ANAC58 ---ARR14(2)   <---------GLK1(1)         <---------ALFIN1    --------->ICU4          --------->LBD16<   cccagtgaccggagcagaattctgcggcggagggtaattggaaacaccttgaaaggtaccgtattgatgatgctggttaccttcttccgaagcaaatcct  5841500                                         ------>ZmHOX2a(2)     <-----------GT1                    <---------At4g35610    <---------CCA1(2)                   --------->At4g35610 <----------DOF2             <----------DOF2  ------>ZmHOX2a(2) ---------ANAC58         <---------CCA1(2)----------->HVH21 ------DOF2       ----------->HVH21    <---------ARR11(3) ->ZmHOX2a(1)    --------->LBD16     <---------MYB52(1) >ARR14(2)       <-----------HVH21  --------->LBD16    <---------YAB1 -ARR14(2)     <---------LBD16     --------------------->WRI1  <---------ATHB12                    *TSS ---------ANAC58--------->ANAC46  <---------LBD16  <----------DOF2                           >>>>>>>>   ttgcttttatcttcttctccgtgacccatctctttctccgtgatctgatcgctctttctgattcaatcgagattgaagcgttgaatcaatttgaagaaga  5841600                                          --------->At4g35610                                  ------                                     <---------AHL20(2)                     <------------CBF  <------                                     --------->ATHB51              <---------GLK1(1)        ---------                                     --------->ATHB12              --------->GLK1(1)        <--------                                     <---------ICU4               <---------ARR14(2)       --------->ICU4                                     --------->AHL20(2)           --------->ARR14(2)       <---------YAB1                                 --------->AHL20(2)            <---------ANAC55(2)  --------->LBD16                                 <---------AHL20(2)          <---------ANAC46      <------NtERF2<----   <----------DOF2            <----------DOF2<-----------HVH21 --------->ANAC55(2)<---------LBD16 >TBF1             ----------->GT1  --------->ICU4     --------->LBD16  --------->LBD16 --------->ICU4   agtctcttttttttttttttttggttaaaacacttttaattatttgctgtcagaccccagataacgcgtatttccgaaaattggcccggagttattatta  5841700                                                                              <---------AHL20(2)  <----------DOF2    --------->ICU4                                       --------->AHL20(2)        - --->AHL20(2)    <---------ZAT14                                          <---------YAB1           <- ---YAB1         --------->ZAT14                        --------->YAB1    <---------AHL20(2)   <----- >YAB1        ------>MYB46(1)                  --------->YAB1            <---------AHL20(1)   <------ -ICU4     --------->DEAR3(2)            <---------------------WRI1      --------->AHL20(2) ------->MYC3 -----AHL20(2)------>MYB83          <---------YAB1   --------->YAB1      --------->AHL20(1) <-------MYC3   tatgcttttacaaaccgactgcaatgtttgacattaatacgattgctattcatactaataagaaagttttgaaaatataatttatgaagaaacatgtggt  5841800                               --------->ZAT2          <---------YAB1                               --------->HSFB2a(1)  --------->ICU4          --------->ICU4       <---------HSFC1(2)   <---------YAB1        <---------ICU4         <---------ZAT2     --------->YAB1       --------->AHL20(2)<-----------HVH21        -------->HAHB4     --------->YAB1      --------->LBD16         --------->ICU4    <---------YAB1   ------->TEIL                <---------ATHB12 ---------->GT1<---------AHL20(2)      --------->ARR11(3)     <-----------GT1<---------YAB1       --- --------TOE1(3)   <-------TEIL<---------HSFB2a(1)<---------ICU4         <----------DOF2        <---- --GAMYB<---------AHL20(2)     --------->HSFC1(2)<---------YAB1    <---------TOE2(3)      <---------YAB1 ---MYB46(3)  --------->AHL20(2)       <---------ARR11(3)    --------->AHL20(2)        ------->TEIL   tagggtataataaatattaaatgcatccgtcgaagcttcgagttcttggaaatgattatgaaattaactaatgttctttatcatccatgaatatgattta  5841900                <-----------------AGL1          --------->ICU4          <---------YAB1        <---------ICU4        <--------HAHB4                                       --------->ZAT6        --------->YAB1                                      <---------YAB1       <---------ATHB12                        <---------ZAT14                           --------->WRKY12     --------->WOX13(1)--------->MYB59         --------->ZAT14                         <-------GAMYB ------>YAB1 <---------YAB1            --------->YAB1    <---------AHL20(2)      <---------ICU4 -------GT1 --------->AHL20(2)        <---------YAB1    --------->AHL20(2)    --------->YAB1  ------>ZmHOX2a(1)   tcatcttcaatcatttttatacaattaggcaatggaaactataatacagaacagagaattttatcagtagtctgtcactataagcatttcgttgtccttg  5842000                                                                                       <---------ANAC58                                                                                   --------------->AGL15            <---------ARR11(3)                    --------->MYB52(1)               ==================            --------->ARR11(3)                   ------->GAMYB                 <----------DOF2           --------->RVE1(1)                    <---------MYB52(2)          <-----------GT1           --------->CCA1(1)                    --------->MYB46(3)      <---------AHL20(2)       --------->AHL20(2)              <----------DOF2                  --------->AHL20(2)      <----       <---------AHL20(2)              <---------DAG2                   <---------YAB1 <---------ANAC58 --------->AHL20(2)          <---------AHL20(2)--------->At4g35610   <----------DOF2   <---------ANAC46 <---------AHL20(2)          <---------YAB1    <---------At4g35610<-----------GT1  <----------DOF2 <-   tttttaattttaaatatctatttcaagttttttaattgtcacttttgtcaactaacaacatcgttgttaaactttttattactttctttgagtggaattt  5842100  Previous    Next  AGI:  At1g17080.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53560.1); similar to unknown [Populus trichocarpa] (GB:ABK95219.1); contains domain PTHR10052 (PTHR10052); contains domain PTHR10052:SF2 (PTHR10052:SF2) Range:  from: 5840262    to: 5841599    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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