Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <-----------RAV1(1)                                                          <---------MYB46(3)          --------->YAB1                                                        <-------GAMYB                <---------YAB1                                                      <-------TEIL               --------->YAB1                                                    <-------MYC3                 <---------AHL20(2)                                                    ------->MYC2              ------>MYB46(1)                                                    ------->MYC3              ------>MYB83                                                   --------->ANAC58         <---------MYB59                                                   --------->ANAC58         <---------MYB111(1)                                              ----------->HVH21        --------->CCA1(2)                                            <---------ANAC58          <---------ARR11(3)     <-------                                      <---------TOE2(3)--------->MYB52(2)  --------->ANAC55(2)                      <------ZmHOX2a(1)     <---------ANAC58          --------->ARR11(3)   --------->ANAC55(2)                     <----------ID1   <---------TOE1(3)<---------MYB46(3)<-----------GT1   <---------ANAC55(2)                  ---------->DOF2    ---------->DOF2<-------MYC2  ---------->DOF2--------->AHL20(2)   taagtttgttcttagcaaaaaaaaggacaataagtttgttaaagtttcttgacacgttcgttgttgctcaaagatatacctaataatatgatcacatgat  5822000                                                                                              -------                                                                                              <------                                                                                            <--------                                                              ------>ZmHOX2a(1)             ---------                                                              --------------->AGL15         ---------                                                              <---------------AGL15         <--------                                                             ----------------->AGL2         ---------                                                             ----------------->AGL3      <---------ANAC58                                               <---------AHL20(2)                        <---------ANAC58                         <---------TOE2(3)     --------->AHL20(2)               <-----------RAV1(1)             --------->TOE2(3)   --------->ETT(1)    <-----------GT1       <----------DOF2<---------SPL7            <---------YAB1      ---------->ID1--------->YAB1 <-----------------AGL3<---------MYB46(3) --YAB1  <---------MYB52(1)   --------->MYB52(2)<---------AHL20(2)   ----------->GT1     <---------ANAC46   tcacatactctgttatcttagaagtctatggtttgtcgcaaaatccaattttaattttcgactcctaaatttagtaacttttgtgttgttagcgtgcgct  5822100                                                                                      -------->P                                                                                      ------>MYB46(1)                                                                                      ------>MYB83                                                                                     --------->MYB55(1)                                                                    <---------ZAT14 --------->MYB46(3)                         <---------RVE1(1)                     <-------TEIL         <---------MYB111(1)                         <---------CCA1(1)               --------->ANAC58           <---------MYB59   ---------->DOF2      --------->ARR11(3)               --------->ANAC58        <-----------GT1 -->At4g35610           <---------ARR11(3)            --------->TOE2(2)     --------->ANAC55(2) ---At4g35610           <---------AHL20(1)            --------->TOE1(2)    <---------TOE2(3) -ZAT14            <-------TEIL                      --------->ANAC58      <---------TOE1(3) >SPL7          --------->ANAC58                     --------->ANAC46     --------->MYB52(1) >ZAT14         --------->ANAC58                     --------->ANAC58  --------->ANAC46 -ZAT18         <---------ANAC55(2)            --------->TOE2(3)    --------->ZAT14 <---------MYB46(2) >ZAT18         --------->ANAC55(2)            --------->TOE1(3)    <---------ZAT18 <---------MYB111(2)   gtgagaaaagacttgctcacgtacaagatattttagataagttaagaaacctcaaacgtaagacatacattgcacttaacgtattaccaacctcttgctc  5822200                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                            --------->YAB1    -------               ----------->RAV1(1)                                        ------------>CBF    <------            ------->GAMYB ------->TEIL             ------->TEIL       --------->ANAC58      <--------            --------->ANAC46          <---------YAB1<---------GLK1(1) --------->ANAC58     --------->ICU4         --------->MYB52(1)        <---------AHL20(2)            <----------ID1          --------->YAB1    <---------ANAC46 --------->MYB52(1) --------->TOE2(3) <---------------AGL15--------->AHL20(2)<---   aatcttgtggataacagcaacagtaacgaatgtcgattttattcttaaacatgtatttccctaaaaatggacaaacaacaataacatagaataaaaatta  5822300                                                             *TSS                                                            <---------AHL20(2)                                                           <-----------TBP                                                         --------->AHL20(2)                                                        <---------AHL20(1)                                                        <---------AHL20(2)                       ----                                                     <---------ICU4                          ------->MYC3                                                    <---------ATHB51   <---------ANAC46      <-------MYC2 -------->GT1                                       --------->ICU4<---------GLK1(2)          ------->MYC2 ------TOE2(3)                                      --------->AHL20(2) <---------ANAC58      <-------MYC3 ------YAB1              ---------->DOF2          --------->YAB1  --------->ARR14(2)    --------->ANAC58 -->ICU4          --------->AHL20(2)    <---------ETT(2)--------->AHL20(2)      --------->WOX13(1) ---ATHB51   ------------>CBF     --------->GLK1(2) <---------AHL20(2) <---------ANAC58 --------->ANAC58 -ICU4 --------->At4g35610     ------------>CBF --------->AHL20(2)--------->ARR11(1) --------->At4g35610 ------TOE1(3)    <---------AHL20(2)  --------->At4g35610<---------AHL20(2)   <------ZmHOX2a(2)  <---   tggttaattagcttccacaattttttaaaaagaaacaatctgttgacaaaaaaaataattaatttatagatttgcttgggatcaattagctcgcatgtgg  5822400                                                 --------->GLK1(1)                                                 <---------GLK1(1)                                     --------->YAB1                                    <---------AHL20(2)                                    <---------YAB1<---------ARR11(3)                                 --------->AHL20(2)                                 <---------AHL20(1)                                  ----------->GT1                                 <---------AHL20(2)                     <---------HSFB2a(2)                                 --------->AHL20(1)                     --------->HSFB2a(2)                                 --------->ARR11(3)                    <---------LBD16          <-----------GT1        <---------ARR11(3)  <----------DOF2--------->At4g35610          <---      --------->AHL20(2)        --------->AHL20(2)--------->ARR11(3)<---------At4g35610  <---------YAB1 ----->ARR14(2)   <---------------AGL15     ---------->DOF2  <---------GLK1(2)----------->GT1   ----- ------ARR14(2)   --------------->AGL15 ---------->DOF2      --------->ARR11(3)    ---------->DOF2  -   attttcatatatatacaataccatatgaagccaaatatattataaagaaagaaatcttttttagattttgagctctggaatggagaaaagtatcaatgga  5822500                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                 ====                                                                                                 <---                                  <---------ANAC58                                             ------                                  <---------ANAC58                                          <--------                               <----------DOF2                                              ---------                            <-----------GT1        <----------DOF2 <---------ZAT14        --------->YAB1 ---ZmHOX2a(2)           <---------YAB1            --------------------->WRI1            <---------ATHB12 ---->ARR11(3)        <---------YAB1       --------->YAB1         <----------DOF2        <---------ATHB51 -------->AtLEC2    ----------->GT1     <----------DOF2     <------ZmHOX2a(2)          --------->WOX13(1)   tcatgcagactcatcaagagactcgtgattatactttcttgtctttcatattcctttgttcgatcagactttacagagagaacaaatatcaattatgtat  5822600              --------->LBD16            <---------LBD16          <------ZmHOX2a(2)         --------->ARR11(3)         <---------ARR14(3)         <---------ARR11(3)         --------->ARR14(2)         <---------ARR14(2)         --------->ARR14(3)        <---------GLK1(1)        --------->GLK1(1)        --------->At4g35610   --------->ALFIN1 --------->ALFIN1 <-----------RAV1(1)                                                      <------MYB83 ------->ZAT2<---------LBD16                                              <---------DEAR3(2) --------At4g35610                                                        <------MYB46(1) --------->RAV1(2)                                                       <---------DEAR4(1) ------->At4g35610                                --------->HSFC1(2)     <---------MYB46(3) --------ZAT2--------->LBD16             <------NtERF2                   --------->MYB46(2) ============RAV                        <---------MYB46(3)               <---------DEAR3(1)       --- --------RAV1(2)                       --------->ALFIN1                  <---------DREB2C(2)      --- ->TEIL <---------At4g35610--------->DOF5.7(2)    <---------HSFC1(2)    <---------ORA47(1)  --------- -ANAC55(2) --------->TOE1(2)          <---------DEAR3(1)              <-----------HVH21    --------- >ANAC55(2)------>ZmHOX2a(2)      --------->MYB52(1)      --------->MYB46(3)       --------->At4g35610   cagctgtgggagatcccgggatgagaaacgataacttaagggtggctatagaagcttggaaccaatgcaacgaggtcggtgaagaagctacaaacatggg  5822700                                                      --------->YAB1                                              ----------->GT1                                              --------->LBD16                                             --------->LBD16                                            <---------LBD16 ------>ANAC58    <---------ANAC58      <----------DOF2 ------>ANAC58    <---------ANAC46     <---------ANAC58                                             - >TOE1(2)         <---------ANAC58     <---------ANAC58  <---------ICU4                           <-- >TOE2(2)      <---------WOX13(1)--------->ZAT6--------->At5g28300       <-----------GT1     XXXXXXXX   aagccctcgaatggcagattgcttcgatatcgataactctagctttcccggtaaaatcataatgttgttatgttcttacttctctgttttaggccttaat  5822800                                                                                     --------->ANAC46                                                                               --------->AtLEC2                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                             <-----------RAV1(2)                                                                          ----------->HVH21                                                                         --------->LBD16                                                                        <---------ANAC58                                                                        <---------HSFB2a(2)       --------->ANAC46                                                 <---------ANAC58       --------->ANAC58                                                 <---------LBD16       --------->ANAC58                                                <-----------------AGL1    <---------ARR14(2)                                                --------->MYB52(1)    --------->ARR14(2)                                                ------>MYB83   --------->ANAC58  <----------DOF2                                                     ------>MYB46(1)--------->ANAC58 -------->LBD16                                                  <-----------GT1   --------->MYB52(1) -------LBD16     ----------->GT1                        ---------->DOF2--------->HSFB2a(2) XXXXXXXXXXXX>MIR2112-3P              <---------ICU4  --------->TOE2(3)<---------LBD16  --------->MYB52(1)   tccgcatttacgctaacatatagaaaaacaaacttcatacttatttcaaaacattttcttaaagttgttaccttccgggacaggcaaacgaaacagagac  5822900  Previous    Next  AGI:  At1g17020.1    Description:  SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G17010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70478.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283) Range:  from: 5820199    to: 5822006    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g17030.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G47010.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G47010.1); similar to Os05g0272800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055066.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48013.1) Range:  from: 5822361    to: 5824448    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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