Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ----------->GT1                   <------MYB46(1)                   <------MYB83                  --------->MYB111(2)                  <---------MYB46(3)                  <---------AtMYB61                  --------->MYB46(2)           <----------DOF2                           --------->AHL20(2)                  --------->MYB111(1)          <---------YAB1                        <---------AHL20(2)                  --------->MYB59         ----------->GT1                            --------->AHL20(2) >At5g28300      <--------P              --------->DAG2                        <---------ANAC46 ->GT1           <---------MYB55(1)     ---------->DOF2                    <---------GLK1(2) --------   tttgaacgatatataaggggttggtaaaaaaaccaaaaaccaaaaagtgatttttggattttggtttatagttttcagattgtgtattaaaaaaaatgaa  5819800                               <---------DAG2                   --------->DAG2                                    <---------GLK1(2)                  ---------->DOF2  <---------TOE2(3)      --------->TOE2(3)       <---------TOE2(3)       <----------DOF2       --------->AHL20(2)    <----------DOF2          -     ---------->DOF2     --------->ANAC58           <---------ATHB12 <---------ARR11(3)             - <---------------AGL15   --------->ANAC58 <---------AHL20(2)         --------->ARR11(3)             < --->GT1----------->GT1  --------->O2     --------->AHL20(2)--------->AHL20(2)                  -----   aaactaaaaaaggttttataaaaagtcaagtcactttaagaaaattaaaaaccaataaaacataaattttagattttctttaaaatttgacaaaactatc  5819900                                                              --------->ARR11(3)                                                  <------MYB46(1)                                                  <---------ANAC46                                                  <------MYB83<---------ARR11(3)                <---------AHL20(2)  <-----------GT1    ---------->DOF2 -------->GLK1(2)              <---------DAG2     ----------->GT1  <---------HSFB2a(2)            <-- -------->ARR11(3) --------->HSFB2a(2)    --------->YAB1--------->DAG2                            --- ---------ARR11(3) <---------HSFB2a(2)  --------->GLK1(2)     <---------GLK1(2)                   --- ---->YAB1  ------>ZmHOX2a(1)  <----------DOF2   --------->MYB59   --------->HSFB2a(2)      ---------   aaaatctaggtttcctattttttagaaaacacactttttcacaatcttggttcggtataaagtagatttttagaaaaactaaaaccaaaaacaacatcaa  5820000                                      <----------DOF2                                    ------>MYB46(1)                                         ---------            ---------->DOF2       <---------MYB111(1)                                  <---------MYB52(1)      --------->MYB46(3)          <---------MYB46(2)                                  <----------DOF2   --------->REM1(1)              <---------MYB59                              --------->At4g35610 -------ARR11(3)        ------->TEIL------>MYB83                               <---------At4g35610 ------>ARR11(3)     <---------ANAC55(2)                                       ----------->RAV1(2) ------>GLK1(2)      --------->ANAC55(2)                               <----------DOF2------>ZmHOX2a(1) >TOE2(3)--------->AtLEC2      <-----------GT1            --------->YAB1  --------->YAB1    <--------   aatctacaaccattcaaagtatcatgtatcaatttacctactttgggtctggggtcatactcataccatatgtcttttatcatctgtcctttatttatat  5820100                                                            --------->ATHB12                                                            <---------ICU4                         --------->YAB1                     --------->YAB1    <---------ARR14(2)                         <--------HAHB4                    <---------ATHB12   --------->ARR14(2)                         <---------ICU4                  --------->WOX13(1)--------->ANAC55(2)                        <---------ATHB12               <---------ATHB12    <---------ANAC55(1)     *TSS                      --------->WOX13(1)               ------------>CBF    <---------ANAC46       ---                    <---------ATHB12                 --------->WOX13(1)    <---------ANAC55(2)    ---                    ------------>CBF               ------------>CBF       <-------TEIL          <----        --------->WOX13(1)                      --------->WOX13(1) <------ZmHOX2a(1)            ----- >AHL20(2)      --------->AHL20(2)            ------------>CBF   <---------TOE2(3)        <---------- -AHL20(2)<---------MYB52(1)              <---------AHL20(2)<--------HAHB4<-----------------------TaNAC69(2)   tttcttccatcagtcagtttaaatcaatcattttcttcaactatttaagtcaatccaatcaatcatttaggaaaaatacgtatacgtttttaataccacc  5820200                                                                   <---------ZAT14                                            <---------DDF1         --------->ZAT14                                            ------>NtERF2         <---------ALFIN1                                            <---------RAP2.6(3)  --------->At4g35610                                          --------->DEAR3(2)     <---------At4g35610                                         --------->At4g35610     <------NtERF2                                   ---------->DOF2        --------->DAG2        <---------ANAC58        --------->LBD16          --------->DAG2 ---------->DOF2               --------->HSFB2a(2)      ---------->DOF2    <---------At4g35610 --->MYB46(1)              <---------ANAC58--------->DEAR3(1)    <---------ZAT2 --->MYB83 --------->REM1(2)   <---------HSFB2a(2)  --------->ANAC58       --------->At4g35610 -----MYB111(1)            <---------ANAC46--------->RAP2.6(2)   --------->ZAT2 ---->AtMYB61      <----------DOF2<------ZmHOX2a(1) --------->ANAC58   --------->ALFIN1 -GT1   <---------ANAC58   <---------ANAC58----------->HVH21    ----------->RAV1(1) ------>ZmHOX2a(1)   tacaaaagaaccgtgtccaaacttttgtttcgtccaggaaagaagccgacatggaagcaaaaggggcagcacagtggagctctatcctagttccatccgt  5820300                                              <-----------HVH21                                              <---------SPL7                                             <---------ANAC58                                             --------->ANAC58                                             --------->ANAC58                                        <---------TOE2(2)                                       ------>ZmHOX2a(1)                                    ------>ZmHOX2a(1)                                --------->ARR14(2)                                <---------MYB52(1)                          --------->ANAC58   <---------ANAC58                       ====================HOX2a_HOX2a             <------ZmHOX2a(1)--------->HSFC1(2)--------->SPL7             =================HOX2a_HOX2a   <-------TEIL                           --------->ARR11(3)           <---------TOE2(3)  --------->HSFB2a(1)                                <---------YAB1           <---------TOE1(3)  <---------HSFB2a(1)                                --------->ICU4       <-------GAMYB   =======================HOX2a_HOX2a                      --------->YAB1      <---------MYB46(3)  --------->ANAC58  --------->SPL7            --------->ZAT14   --------->CCA1(2)   <------ZmHOX2a(2)<---------TOE1(2)         --------->MYB52(1)   tcaagagatggttaaggagaagacgatcacgaccgttcctcctaggtacgtccggtctgatcaagacaaaactgaagtcgatgatgattttgatgtgaaa  5820400           --------->YAB1                              <---------TOE1(3)          <---------ATHB12                       --------->ARR14(2)        --------->WOX13(1)                       <---------GLK1(2)     ------>ZmHOX2a(2)                           <---------ARR14(2)                                 -    <------ZmHOX2a(2)                    --------->AtMYB61                             --------->ALFIN1   --------->ARR11(3)                    ------->GAMYB <---------TOE2(3)            --------->DAG2 <-   <---------ARR11(3)                   --------->MYB46(3)                  <---------ANAC58    <----  <---------GLK1(1)                     <---------MYB55(2)                  <---------ANAC58<--------   attgagatcccaatcatcgatatgaagcgtttgtgttcttcaaccaccatggattctgaggttgagaaactcgacttcgcttgcaaagagtggggatttt  5820500                                                                             ----------->HVH21                                                                            <-----------HVH21                                                                           --------->ANAC55(2)                                                                           --------->ANAC46                                                                           --------->ANAC55(1)                                                                           <---------ANAC55(2)                                                                           --------->ANAC58                                                                           --------->ANAC58                                                                          <-------TEIL                                                                 <---------TOE2(3) ----------->GT1                     --------->DAG2              <---------YAB1 -------->LBD16                  --------->HSFB2a(2)            <-----------GT1       <---------At4g35610 ----------RAV1(2)               <---------HSFB2a(2)      <----------DOF2<-----------GT1 -------GT1              <-----------GT1          <---------ANAC46--------->YAB1<---------O2 -ARR14(2)            --------->YAB1---------->DOF2   <----------DOF2--------->AHL20(2)   tccaggtaaattctccaactacaaatataactcttctataaagcagcccatcgcgtctttctttattaacataatatacgtcacatggagcttatattag  5820600                                                                                                -----                             <---------At4g35610                                                <----                  <------ZmHOX2a(1)                                                            ------                 ----------->GT1          <---------ANAC58                                  ---------             <---------WOX13(1) --------->AHL20(2)                                         <------NtERF2           --------->ATHB12  ----------->GT1                            ----------->GT1    --------->ATERF1(1)          <---------YAB1     --------->At4g35610                    <---------At5g28300    ----------      <---------YAB1        ----------->GT1          -------->P    <-----------GT1        --------->At4g35610 <-----------GT1<---------TOE2(3)         <---------ANAC58  <---------MYB52(1)            <---------At4g35610   tttttactatttttgattgaggaaaataggcagataaaatcgtttcttacaaaacaacctctgttttttttaccatgttaaacacaaattggagccgaac  5820700  Previous    Next  AGI:  At1g17020.1    Description:  SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G17010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70478.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283) Range:  from: 5820199    to: 5822006    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version