Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------ANAC46                                                       <---------ANAC58                                              ----------->HVH21                                             --------->LBD16                    --------->ANAC58        <---------LBD16                                     <----                    --------->ANAC58        --------->ANAC46                                <------ZmHOX2a(1)         --------->TOE1(2)                 <---------LBD16                                --------->LBD16         --------->TOE2(3)               ------>ZmHOX2a(2)                               <---------LBD16         --------->TOE2(2)              --------->GLK1(1)                                <-----------RAV1(2)         <---------MYB59                <---------GLK1(1)                              -------->ZAP1       --------->GLK1(2)               --------->ARR11(3)                           ----------->HVH21   <---------HSFB2a(2)       --------->At4g35610       <---------ANAC58------->TEIL --------->WRKY12-   --------->HSFB2a(2) ---------->DOF2 <---------ARR11(3)            --------->ZAT14--------->WRKY38(1)   tagatcgagaacctaagtatggaagcaaaggagcttagagtgatctccgggacagtggcttctatttgcaatgtactcgagaccaattgacccaggaata  5788800             --------->ANAC58             --------->ANAC58             --------->bZIP60(2)               --------->RAP2.6(3)             --------->ANAC46              --------->YAB1            ------>NtERF2             <------ZmHOX2a(2)           <XXXXXXXXXXXXXXXXXXXXXMIR777------>ZmHOX2a(2)        <---------ANAC55(2)           --------->CCA1(2)        --------->ANAC46             <---------ARR14(2)        --------->ANAC58             <---------ARR11(3)        --------->ANAC55(1)          --------->AGP1        --------->ANAC58             --------->ARR11(3)     <---------ARR14(2)              <---------AGP1                               --------->ANAC58     --------->ARR14(2)              <---------ARR14(3)                           --------->ANAC58 -----AHL20(2)                       --------->ARR14(3)                 <----------ID1             <- ---------->GT1                      --------->ARR14(2)   <-----------GT1--------->CCA1(2)   --------   aatcgaaaatacgccacgaaactcaatgtgaaataccaagatctagcatgaaggccgattttacatacaaataagagacgaagaacgaaatgaagagacg  5788900                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                      <---------ANAC58                            --------->ZAT2         <---------DOF5.7(2)                <---------ANAC58                            <---------ZAT2         <-----------GT1                 --------->ALFIN1                      ------>ZmHOX2a(1)          --------->DOF5.7(2)          <-------TEIL                      ----------->HVH21 --------->GLK1(2)                    --------->CCA1(2)              ------->TEIL  --------->At4g35610 <----------DOF2             <---------SPL7      -----    <----------ID1  <---------At4g35610 <---------ARR14(2)                  --------->TOE1(2)  ------    ----------->GT1 ----------->RAV1(2) --------->ARR14(2)                <---------TOE1(3)    ------ -----ZmHOX2a(1)    --------->At4g35610 <-----------ARR10            <----------DOF2  <---------ANAC46 ->CCA1(2) <---------MYB52(2)          <---------CCA1(2) <----------DOF2  <---------TOE2(3)    ------   aggaagacgaaaaacgaacctctcctgaccagcagtgtcccaaatctgagctttaacgactttgccatcgacttttaaggtacgagtggcgaattcgacg  5789000                                              ---------->DOF2            --------->ARR14(2)       <---------ARR14(2)                  --------->HSFB2a(2)           <---------ARR14(2) <---------ATHB12                          <---------HSFB2a(2)           <---------GLK1(2) ->NtERF2                               <---------ARR14(2)             --------->LBD16 --->ANAC46                             ------->TEIL       <---------GLK1(1) --->ANAC58                             --------->GLK1(2) --------->ARR14(2)                <-------- --->ANAC58                             --------->ARR14(2)<---------ARR14(2)       --------->YAB1   ccaatggtggatttagactctagattgaactcgtttttagtgaatctggaaaggagattggatttgccaactccagaatcgcctataagaacaactttga  5789100                                                      <---------MYB46(3)                                                     --------->ALFIN1                                                     <---------AtMYB61                                                   <---------ZAT2                                            <---------ATERF1(1)                                            ------>NtERF2  <---------ANAC58                                           --------->DEAR3(1)                                           --------->RAP2.3(3)                                           --------->RAP2.3(2)                                          --------->ORA47(2)                                          --------->RAP2.3(1)                                         <---------ATERF1(1)                                         ------>NtERF2--------->MYB55(2)                                ------>NtERF2    <-----------RAV1(2)                           ------->TEIL  --------->LBD16   <---------ANAC46                   <---------ALFIN1     --------->DEAR3(1) <---------ANAC58              --------->At4g35610      <---------LBD16--------->MYB111(2)      --------->YAB1     --------->ZAT14--------->ANAC46<--------P                     ---------->DOF2 --DOF2       <---------At4g35610    --------->ARR14(2)<-------GAMYB               ---------->DOF2   agaggtaatcgtagtcatcttccactctgtaccctgccatctccgccgtctccaggtggttgcttcttctcagcgattaatctgagaaagaaagagagag  5789200                                                                                       ----------->HVH21                <---------ZAT6                                                       ----------->GT1            <---------ZAT14                                                        <---------ANAC46            --------->ZAT2                                                         <---------ANAC58            <---------ZAT2                                                         <---------ANAC58            --------->ZAT14                                                      ------>NtERF2            --------->At4g35610                                                 <---------ANAC46            <---------At4g35610                                                 <---------RAP2.6(2)           ----------->RAV1(1)                                           ---------->DOF2    ---------        --------->ANAC58                    --------->MYB52(1)    ------->TEIL--------->MYB52(1)        --------->ANAC46            --------->CCA1(2)          <---------ANAC46--------->RAP2.6(3)        --------->ANAC58         ----------->ARR10        <------------CBF   ----------->HVH21      --------->CCA1(2)    <---------ZAT14*TSS          --------->ARR11(3)--------->DAG2    ---------   agagagagagacgcagcagtgtgaaggtgtaaactgagatttgaaataacgctgagaagaaattggtgtatgtgttaaagtgacggcttgtgacaagaca  5789300                           --------->WRKY12                          <---------MYB52(1)   ----------->HVH21                         <---------At4g35610 --------->ALFIN1                         <-------GAMYB     --------->ALFIN1                        <---------MYB46(3)<-------MYC2                  ------>ZmHOX2a(2)       ------->MYC2                 <------ZmHOX2a(2)        ------->MYC3                 --------->CCA1(2)        <-------MYC3                --------->ARR14(2)       <------NtERF2                --------->AGP1           <---------ANAC58                <---------ARR14(2)       <---------ANAC58                --------->ARR14(3)       <---------ANAC46                   <----------DOF2                <---------ARR14(3)      ------>NtERF2                       --------------->AGL15                --------->ARR11(3)     <---------ANAC58                     <---------DAG2                <---------AGP1 ------>ZmHOX2a(2)      ----------->GT1    <-----------GT1 >ANAC58        <---------ARR11(3)     <---------ANAC58            ----------->GT1   <---------GLK1(2) >ANAC58       <---------GLK1(1) <------------CBF   <-------GAMYB --------->DAG2<-----------GT1   gtctgtaactgtaatcgagatctggtccgttgatctattgggcgcgtgtgtgactgttgttatatcaaaaggtttttactttttacaggttttcgctgta  5789400                                                                          --------------->AtSPL8                                                                      --------->ALFIN1                             <---------AHL20(2)           --------->At4g35610                             ---------->DOF2              <---------At4g35610                            --------->AHL20(2)           --------->MYB59  --------------->AtSPL3                          --------->TOE2(3)            <---------MYB52(1) <---------------AtSPL8                         <---------ICU4    <------ZmHOX2a(2)       --------->DAG2                         <--------HAHB4   <---------ARR11(3)      ---------->DOF2                 <--                        <---------YAB1    --------->ARR11(3)   --------->YAB1                     <--   ttagcagggtgaagactaaaaatttgatcattaaatcaccataagatcactagattagttagctctaataaagtgggaagtacaacaatataaacacaaa  5789500                                                                                             --------                                                                                     <---------WOX13(1)                                                                                   --------->ATHB12                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                        <----------DOF2        <---------ARR11(3)                <---------YAB1                     <-----------GT1----------->GT1                           <---------YAB1 --------    <---------------AGL15         <---------ICU4                              <---------AHL20(2)    --------------->AGL15        --------->ICU4--------->ARR11(3)      ----------->GT1       -------- -------DAG2        <-----------GT1<---------TOE2(3)     --------->TOE2(3)    --------->AHL20(2)  --- --------DOF2<------ZmHOX2a(1) --------->YAB1 <---------CCA1(2)     <----------DOF2<---------AHL20(2)   ctttttcttgaaataggacgttttaacttttagtaataatgtaatttcatatctcaaaaacttaacttctctttggttatattattaattgactcacgcc  5789600                                                                                              <------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            <--------                                                                                        >>>>>>>>>WRKY6                                               <---------TOE2(3)                      --------->ZAT18                                      --------->AHL20(2)                            --------->At4g35610    <-------TEIL    <---------------AGL15   <---------YAB1                       ------>ZmHOX2a(1) ->ANAC58    <-----------GT1        ----------->GT1 ----------->GT1<---------ANAC55(2)--------->WRKY45 ->ANAC58 <---------YAB1        <---------ATHB12  <---------ARR11(3)    <---------YAB1--------->WRKY38(1) ->ANAC46<---------AHL20(1)     <---------YAB1---------->DOF2      <---------ANAC46 <---------At4g35610 -------->HVH21     --------------->AGL15--------->ICU4            --------->ANAC55(2)--------->WRKY12   atgacatacattatttttctagctaaaatttgtaatcaatgtaaatattaaagatagtaaaaaaaaactacgtgattaatgtcctgagttgactattatt  5789700  Previous    Next  AGI:  At1g16920.1    Description:  RAB11 (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding. Identical to Ras-related protein Rab11 (RAB11) [Arabidopsis Thaliana] (GB:Q39222); similar to AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18800.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02113.1); contains InterPro domain Ran GTPase; (InterPro:IPR002041); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains Int Range:  from: 5787323    to: 5789242    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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