Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <-----------RAV1(1)                                                      --------->YAB1 -------ARR11(3)                                                        --------->MYB46(3) ------>AHL20(1)                                                       ------>MYB83 -------AHL20(1)                                                       ------>MYB46(1) >ANAC58                                                          --------->YAB1 >ANAC58--------->ATERF1(1)<------ZmHOX2a(1)                     --------->MYB46(3) ->AtSPL3    <---------MYB59------------------------>ANAC81      <---------ATHB12 ->AtSPL8 <---------RAP2.6(3)                    --------->ARR11(3)  --------->MYB46(3)             < --AtSPL8 ------>NtERF2---------->DOF2     ---------->DOF2     --------->WOX13(1)             <------   tatatatgtggccgacttaacttagcaaaggattaaacaaaaaaaaaaagagatgttgacaaatccaatcaccaactatcaaatttgatattgaaaacat  5766900             --------->YAB1            --------->ICU4  ------>MYB83                                                      --------->AHL20(2)  --------->MYB52(1)                                               --------->AHL20(2)  ------>MYB46(1) <---------YAB1                         ----------->GT1 ---------MYB59 --------->YAB1                       <---------WRKY18(1) --------->AHL20(2) ---ICU4    <---------YAB1                     <---------ANAC46--------->AHL20(2)   taccgaacagagttatgatcacaatagtttataatccaacatgtttgtgtcttattgaccagaaaaaaaataaaaaaaaattcaagagtgttttgcaaaa  5767000                                                                                        <------ZmHOX2a(1)                                                                                      <---------TOE1(3)                                                                                      <---------TOE2(3)                                                                                   <---------AHL20(2)                                                                                --------->ATHB51                                                                                <---------ICU4                                                                                <--------ATHB1                                                                                <---------AHL20(2)                                                                                --------->AHL20(2)                        <---------ZAT14                  <---------GLK1(2)     <---------ATHB51            <-----------GT1                         <-----------GT1            <---------ATHB12   <--    --------->At5g28300 --------->ZAT14             --------->MYB52(1)     --------->AHL20(2)    ----   ----------->GT1      <---------ZAT18      ----------->GT1           <---------AHL20(2)  ----------   taagacagtaaaatttacatttccagtgaacaaaatggattacaagtgagtaattaacagaatttagatagttttaattcaataatttaaggaatgttat  5767100                               <---------ANAC46                               <------MYB46(1)                              --------->MYB55(2)                              --------->MYB59                              --------->MYB46(2)             --------->MYB46(3)<------MYB83                                     <---------AHL20(2)  -            ------>MYB83      --------->MYB111(1)                              --------->AHL20(2)   <            ------>MYB46(1)   --------->MYB52(2)                               <---------AHL20(2)----           ----------->RAV1(1)--------->MYB111(2)                           --------->ATHB12    -----    ---------->DOF2           <---------AtMYB61                             -------->HAHB4      <---- -------AHL20(2)         <---------TOE2(3)                                  ----------->GT1   ------- ----->AHL20(2)  <---------ATHB12   ---------->DOF2     ----------->GT1    <---------ATHB12  <------- ->GT1    --------->AtMYB61 <---------MYB52(1)     ----------->GT1         --------->ICU4    --------   aaaatagaaagaccaacaaatgatacaaaggttaggtggaaagaagattaagggggtaatgttacatagtttatcaaatgattaaatgttttcaaatgat  5767200                                <---------AHL20(2) -------->AHL20(2)            <---------YAB1 ---------AHL20(2)           <---------AHL20(1) ----->ATHB12       --------->bZIP60(1)                                                 <-------TEIL ---->ICU4          >>>>>>>>>>bZIP19                                                    <---------ZAT14 -----YAB1          >>>>>>>>>>bZIP23                                                --------->DAG2 -->YAB1            --------->ETT(2)                <----------DOF2                 <---------------AtSPL8 --ATHB12           <---------ETT(2)          <-----------GT1                      ---------->DOF2 ->ICU4            --------->DDF1     --------->TOE2(3)                 ----------->GT1 --------->ZAT14   gattaaatacagttttgtaatgtcgacacattattttttttcttaaattcacatctttgttttcatttcttctcttgttaaaaaaaaaagtacagagtgt  5767300                                   --------->AHL20(2)                         <------MYB46(1)                         <------MYB83                         <---------ANAC46                        --------->MYB59                        --------->MYB46(2)                                                <------ZmHOX2a(1)                        --------->MYB111(2)                                       -------------------            <----------DOF2        <---------AHL20(2)                           ---------->DOF2          ------>ZmHOX2a(1) --------->ETT(2)                       ------------------------>ANAC81    <<<<<<<<<TBF1       --------->MYB111(1)                       ---------->DOF2--------->DAG2 <<<<<<<<<TBF1        <---------MYB52(1)              <----------DOF2         <------ZmHOX2a(1)  ----   ttcttcttcttcctctttgtatcagtttggtagacatttttttaaaaaacttagcccttttagagagagaaagagagagaggaaaaggaagaggagagag  5767400                                                                           <---------O2                                                                   --------->MYB52(1)                                                                  --------->TGA1a                                                                  <---------TGA1a                                                                  --------->O2                                                                  --------->ANAC58                                                                  --------->ANAC46                                       =====================================bZIP_DOF                                       ---------->DOF2            --------->ANAC58                                       ==============================================bZIP_DOF                                   --------->At4g35610            ----------->HVH21                                   <---------At4g35610          --------->ANAC46                                  <---------RAP2.3(1)           <---------ALFIN1                                 <---------RAP2.3(3)          <---------ALFIN1                                 <---------RRTF1(2)         <------ZmHOX2a(2)                                 <---------ANAC46           --------->CCA1(2)                                 <---------ANAC58          <---------ARR11(3)                     ---                                 <---------ANAC58          --------->ARR14(2)                    <---                                 <---------RAP2.6(2)       --------->ARR11(3)                    <---                                 <---------RAP2.3(2)       --------->AGP1  <---------TGA1a    -------                                <---------LBD16            <---------ARR14(2)                 <------ ----->ANAC81               <-----------RAV1(1)       <------ZmHOX2a(2)    ========================== ------>DOF2                <---------MYB46(3)  <------ZmHOX2a(2) ===================================   aaagagagagagactgagacaactcatcagttgttgcggctcaaagagagatcgagatcgagatccacacgacggagacgagagagagagagagagagct  5767500            ===============================HOX2a_HOX2a            ------>ZmHOX2a(2)           ================================HOX2a_HOX2a           <------ZmHOX2a(2)          <---------ARR11(3)          <---------ARR14(2)                                                                  <------          --------->ARR11(3)                                                               --------->At4g35610          --------->ARR14(2)                                                               <---------ZAT2   --------->ALFIN1                                                                        <---------At4g35610 ------->GAMYB                                                                  ------>ZmHOX2a(1) ------>MYB52(1)                                                          <---------DAG2--------->DOF5.7(2) ------WRKY12                                                             <----------DOF2 --------->MYB52(2) ------WRKY38(1)               <---------ANAC58                       <---------ATHB12  <---------MYB52(1) -->At4g35610                  <---------ANAC58                      ------>MYB46(1)   --------->TOE2(3) ---At4g35610         --------->LBD16                                ------>MYB83  --------->GLK1(1) ========MYC_MYB <---------ANAC58                  <-----------HVH21--------->WOX13(1) --------->TOE1(3) ========MYC_MYB <---------ANAC58   ------>ZmHOX2a(1)      ----------->RAV1(1)  --------->LBD16   caacggtgatgggatcttggcttccccagtattgcttcctcttcatcttctactgtcactcccacaataccaatcacttttcctgatatcgttagctgca  5767600                                                                         ------>ZmHOX2a(1)                                                              --------->ARR14(1)                                                             <---------ARR14(2)            <---------                                        <---------ALFIN1     <---------GLK1(2)            <----------                                     --------->ANAC46        --------->ARR14(2)    ------>ZmHOX2a(2)                             <---------TOE1(2)             <---------TOE1(2)  <----------DOF2     --------->LBD16         <---------TOE2(2)           <---------LBD16 <---------At4g35610    --------->ANAC46        <-----------RAV1(2)        <-----------GT1   =================HOX2a_HOX2a -TEIL                  ------>ZmHOX2a(1)        ---------->ID1<-------TEIL   <---------WOX13(1)   ttttctccgaaactcactctcttctcctactcaggttccaatccacctcttgtcattttcccagattcgattttcctctgcttgatcgtgtttttccaat  5767700                                                                        --------------->AGL15                                                                        <---------------AGL15                                                                       <---------ANAC58                                                                       <-----------------AG                                                                       <-----------------AGL3                                                                <---------MYB46(3)                                                              <---------ANAC58                                                              <-------GAMYB                                                            <---------YAB1                                                            <---------TOE2(3)                                                      <---------------AGL15                                                      --------------->AGL15                                                     <-----------------AG                                                     ----------------->AGL1                                                     <-----------------AGL1               --------------->AGL15                 <-----------------AGL2              =========================================================MADS_MADS              ========================================================MADS_MADS              ----------------->AGL1                 ----------------->AG              <-----------------AGL1                 ===================================MADS_MADS              <-----------------AGL2              --------->GLK1(1)    <---------ANAC58              <-----------------AGL3              <---------GLK1(1)    <-----------------AGL1              ----------------->AGL3             <---------GLK1(2)     ----------------->AGL2       ----------->RAV1(2)                       <---------ARR11(3)  <-----------GT1             <--- --GT1 <---------ZAT2        ----------->GT1 ------>ZmHOX2a(2)<---------ANAC58              --------- -GT1<---------ALFIN1      <----------DOF2 --------->ARR11(3)<---------MYB46(3)             <--------   ttcatttccacctggttccaattttggggctttgttaaaaatggtgatctagatttccgattttggttgttttacttgaaatggaaactgagagaactcc  5767800  Previous    Next  AGI:  At1g16858.1    Description:  CPuORF55 (Conserved peptide upstream open reading frame 55) Range:  from: 5767293    to: 5770595    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g16860.1    Description:  merozoite surface protein-related. Identical to Uncharacterized membrane protein At1g16860 [Arabidopsis Thaliana] (GB:Q9FZ45); similar to balbiani ring 1-related / BR1-related [Arabidopsis thaliana] (TAIR:AT1G78880.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82086.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23138.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82541.1); contains domain PTHR10420 (PTHR10420); contains domain PTHR10420:SF18 (PTHR10420:SF18) Range:  from: 5767293    to: 5770595    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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