Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->YAB1                     <-------TEIL                     --------->AHL20(2)        ---------->DOF2                      --------->ARR14(2)                     <---------AHL20(2)    <----------ID1           --------->LBD16 <---------GLK1(2)              --------->LBD16            <---------ARR14(2)       <-----------RAV1(2)--------->GLK1(2)            <---------LBD16              --------->ARR14(2)    --------->ANAC58     <---------ARR14(2)            --------->ANAC46             --------->GLK1(2)     --------->ANAC58--------->MYB52(1)   gaaatattgattccaccggacaaaaaattgtcaaacaagtgagaatcgacaaagcataaattcgcaaaccaggggaagaatcaacagattcagtcttaca  5758100                                                  <---------AHL20(2)                                                  --------->AHL20(2)                                                 --------->AHL20(2)                       =========================HOX2a_HOX2a                       <------ZmHOX2a(2) ------>ZmHOX2a(1)               --------->ICU4           --------->TOE2(3)            ----------------->AGL3  <---------HSFB2a(1)            ----------------->AGL2  --------->HSFB2a(1)           ------>NtERF2           <---------KAN4(2)                           <---------ANAC58          --------->LBD16        <------ZmHOX2a(1)--------->AHL20(1)           <---------ANAC58        <---------LBD16=================HOX2a_HOX2a                      --------->ARR11(3)     -----   aatttagttatccggccaaaattagatcacaaataggaacatccttcaaaaaaaaattagatagagagcaaatcagaccttgcgaatgtagccatagtag  5758200                                                 ------>ZmHOX2a(2)                                               --------->ARR11(3)                                               <---------ARR11(3)                                           <------ZmHOX2a(1)                                           =============HOX2a_HOX2a                         <--------                                        <------ZmHOX2a(1)                   <---------TOE1(2)                                        ================HOX2a_HOX2a     --------------->AtSPL8  =====      --------->HSFB2a(2)             --------->ALFIN1                  --------------->AtSPL3  -----   ------>ZmHOX2a(1)                 <------ZmHOX2a(1)               --------->ARR11(3)<------MYB83 ---->At4g35610----------->HVH21     ===================HOX2a_HOX2a  <---------ARR11(3)<------MYB46(1)   ctctccttctcaaacaaatgacagagtttatattttgaaggaggaggatgatctaattctaagagttacaagagctcgtacattcaatttggtttttata  5758300                                                                                                    x                                                                                                    x                                                                                             xxxxxxxx     <---------ALFIN1                                                                       <--------     <---------O2                                                                          <---------DAG2     --------->TGA1a                                                                       <---------     --------->ANAC46                                                                     xxxxxxxxxxx     --------->O2                                                                        ---------->ID1   <---------ALFIN1                                               <---------CCA1(2)      ------>NtERF2 -YAB1                                <-------MYC3           --------->ARR14(2)   <----------DOF2   x ==============bZIP_DOF               ------->MYC3           <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxx ----->DOF2--------------->AGL15   <---------ALFIN1         <---------CCA1(2) <---------CCA1(2)    xx   aagtcccacatcgctagtttaagaaacactcgctctaccacgtttgatataaaacacacttcgtatccatatcgcaactcatacctttctcggccttttg  5758400                                                               --------->ANAC58                                                             <---------ALFIN1                                                             --------->ANAC46                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <---------ALFIN1                                                          xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------ARR14(2)                    <---------At4g35610               --------->GLK1(2)                 <---------PCF2--------->ANAC46          --------->ZAT18                       ----------->TCP11(1)          --------->ZAT14                     --------->ALFIN1xxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <-----------RAV1(1)--------->ANAC58    <------ZmHOX2a(2)                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ARR11(3)                   xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ARR11(3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(se3)      --------->ARR11(3) <-----------TCP11(1)                       xxx xxxxxxxxxxxxxxx>smallRNA(i2)       <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       ------ --DOF2   <---------ZAT14           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <----- -DOF2<xxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxx xxxxxxxxxxxxxx>smallRNA(se3)      --------->RVE1(1) --------->At4g35610                    xxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <-----------GT1     xxxxxxxxxxx >smallRNA(si3)--------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ZAT6    ---------->DOF2 xxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ARR11(3) <---------TOE2(3)   gctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggcccacacgatattaactctattttttaagggagaaagccc  5758500                                                             <------NtERF2                                                             --------->At4g35610                                                            <---------DEAR3(2)                                                            ------>NtERF2                                                            <---------ATERF1(1)                                                           <---------ATERF1(2)                                                           <---------DEAR3(1)                                                           --------->RAP2.6(2)                                                           <---------RAP2.6(2)                                                           --------->ATERF1(2)                                                          --------->ATERF1(1)                                                         <---------ATERF1(1)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   --------->ZAT18                                                   --------->ZAT14   --------->ANAC46                                           <---------ZAT18--------->RAP2.6(3)                                       <---------ANAC58<-------PIF5  --------->ANAC58                                       <---------ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)   --------->ANAC58                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------ANAC58            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->LBD16       <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)------->GAMYB <---------YAB1                  <------NtERF2  xxxxxxxxxxxxxxxx>smallRNA(s) <---------TOE2(3)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ALFIN1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------------>CBF --->ZAT18           <----------DOF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------>NtERF2 ----ZAT18xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxx>smallRNA(fl3)        --------->DEAR3(1)  <---------ZAT14-------->P xxxxxxxxxxxxxx>smallRNA(si3) --------->ATERF1(1) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)------->PIF5 --------->MYB46(3)     <---------   actaagatagcttgctatctgggctttcgcgagtcgcccatgcgttgcactactgcacgggccggctcaacccgccaatttcagtgaaaatttcttttat  5758600                                                                                                    <                                                                                                    <                                                                                            <--------                                                                                            ---------                                                                              <---------TOE2(3)     <                                                                   --------->YAB1           ---------                       --------->ANAC58                           <---------ATHB12          ---------                       --------->ANAC58         <---------ANAC58 ------>MYB83--------->YAB1 ---------                 --------->AHL20(2)             <---------ANAC46 ------>MYB46(1)          <----------         --------->AHL20(2)                     <---------ANAC58--------->WOX13(1) <---------ARR11(3)    <-------TEIL <---------AHL20(2)          <---------TOE2(3)------------>CBF------------>CBF  <---- -DOF2   <---------AHL20(2)              <------------CBF     --------->MYB46(3)   --------->ARR11(3)   gtcaaatacatataaatttttaaataagctatatcgaactaaatattgaggcttgaagccttgaaccaatcaaaaccattaacaatatctaattacgaaa  5758700     --------->GLK1(1) ---------ANAC58 ---------ANAC58 -ANAC55(2)                                                                     ------------>CBF >ANAC55(2)                                    ---------->DOF2                 --------->ANAC46 ---------ANAC46                           --------->ANAC58              <---------MYB52(2) >ANAC46                            --------->TOE2(3)                  ------>MYB83<------------CBF >ANAC58                       --------->MYB52(2)                      ------>MYB46(1) >ANAC58                   <------MYB83    <----------ID1            <---------MYB59          ------- -GT1<---------GLK1(1)     <------MYB46(1) --------->ANAC58  --------->GLK1(2) --------->ANAC58 --------CBF           --------->GLK1(2)   --------->ANAC46 <---------GLK1(2)  --------->ANAC58   ttgctgggtttccaaactgaccaagaatttggtttgtttcttaataagccaaaggcaaaatcgattctgaaccaaacaaaccagcaattggaatccaaac  5758800                      ---------->DOF2                  <---------At4g35610                                                               -                  --------->At4g35610                                           ---------->DOF2<-----               <-------TEIL                                        --------->ALFIN1     XXXXXXXXXXXXX            --------->HSFC1(2)                                   --------->CCA1(2)--------->DAG2<---- -->MYB52(1)<---------HSFC1(2)   --------->ETT(1)         >>>>>>>>>TBF1  <---------ARR14(2)<------ZmHOX2a(1)   cgaaactcttgggaagtttcatctgaaagaaaatgtcggaaccaaaaattcaagagagaagaagaagagatgggggaaatgggaaaggcgataggattgc  5758900         --------->ANAC58         --------->ANAC58      ----------->HVH21                                                 <---------YAB1      <---------SPL7                                              <---------TOE1(2)   <---------LBD16         <---------ZAT18                       ------>NtERF2 --------->DOF2        <---------ICU4        <-----------ARR10  --------->DEAR3(1)            ------- ----At4g35610         --------->ATHB12 --------->ANAC58        ----------->HVH21             ------- XXXXXXX>MIR844       <---------YAB1    --------->ANAC58    --------->At4g35610               ------- -----ANAC46        <-----------GT1--------->ANAC46         <---------At4g35610     <---------CCA1(2)   tgataagcgggacgcttgtgtatcaccattgcgctaatcgcaacgcgactcttctctcgctcatctccgacgttctcatcgttctcttatcttcactcgc  5759000  Previous    Next  AGI:  At1g16820.1    Description:  vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related. similar to VHA-A, ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT1G78900.2); similar to VHA-A, ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT1G78900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43943.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66161.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41694.1); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-te Range:  from: 5756828    to: 5758457    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g16830.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to MEE40 (maternal effect embryo arrest 40) [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41699.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5758870    to: 5762612    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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