Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   ------->TEIL                <---------ALFIN1               --------->LBD16              <---------ARR11(3)     <---------ZAT18                        --------->ARR11(3)     --------->ZAT18                        --------->ARR14(3)    <---------ANAC46                        <---------ARR14(3)    <---------ANAC58                    --------->ANAC46    <---------ANAC58          --------->GLK1(2)   <---------ZAT18<---------CCA1(2)   --------->HSFB2a(2) -----TEIL    --------->RAP2.6(2)     <---------HSFB2a(2)                <----------DOF2 -------------------WRI1     --------->ARR14(2)                        <---------YAB1 >HVH21  ---------->DOF2     <---------GLK1(2)       ----------->GT1 --------->YAB1   tgcattgcgcacaaagccgcatctcttcagagattctcttccacaagaccttgagaggtgaatcaactctatcatctttgaagtaattgtagaaagtctc  5754900                                          --------->ARR11(3)                                          --------->GLK1(2)                                          --------->ARR14(2)                              --------->ANAC58                              --------->ANAC46                            --------->ANAC46                            <---------ALFIN1                            --------->ANAC58                            --------->ANAC58                          <---------ALFIN1<---------ARR11(3)                       <---------ZAT18    <---------ARR14(2)                         --------->TOE1(3)                       --------->PCF2     <-----------ARR10                   --------->TOE2(3)              <---------CCA1(2)      <---------YAB1                           <---------ANAC55(2)            --------->AHL20(2)--------->ANAC58                             ------->TEIL ---------->DOF2      --------->PCF5 ------->PIF5------>MYB83<----------DOF2     --------->DAG2      --------->TOE2(3)      --------->PCF2 <-------PIF5------>MYB46(1)                ---------->DOF2--------->LBD16  -----   tataagaggtcccattatatccccgtgcccacaccaaatatgagtatctttcggcaacgatatcaataaagtgaatgcatccgtaaacctaaaagaagat  5755000                                --------->ANAC58                          <---------GLK1(1)                          --------->GLK1(1)                     --------->At4g35610                     <---------At4g35610                    <---------AGP1         <-----------GT1                                --------->ZAT18               --------->At4g35610        --------->ICU4                                  <---------ZAT18               <---------At4g35610   ----------->GT1                                      <---------ZAT14               <---------ZAT2   --------->ANAC58                    <---------YAB1        --------->ZAT14               --------->ZAT2   --------->ANAC46            <---------YAB1            --------->ZAT6 ------>GT1<-----------HVH21   --------->LBD16            <---------At4g35610       <-----------GT1   gtaaaacaaaaacagtcagctagagctgaaatccgagcaatgtaataactaaattttgtctgatgattttctgatttcagtcgatttaacagtgaactat  5755100                                                                           <-----------TGA1                                                                          --------->YAB1                                                                    --------->YAB1                                                          <---------At4g35610                                                      --------->ARR14(2)--------->GLK1(2)                                                     <---------SPL7<------ZmHOX2a(2)                                                    --------->DEAR3(1) <---------GLK1(2)                        --------->MYB46(3)         <------NtERF2   ==================================             --------->CCA1(2)          --------->ICU4<---------ARR14(2)--------->ARR14(2)          <            <---------ARR11(3)        <---------At4g35610 --------->At4g35610                    ----            --------->ARR11(3)   <----------DOF2  ------>NtERF2    =========================HOX2a_HOX2a    ---------->DOF2    >>>>>>>>>>>>>>>>>LFY      <----------ID1  <------ZmHOX2a(1)   ------>ZmHOX2a(1)   tcagagcaaagagagatatagaaggaaccattgttctttgcgctgattaagacgccgaactgctgaaggatcagaatcgtcattctcctcttcgtcttcc  5755200         <---------ALFIN1                                                               <---------ARR11(3)        --------->MYB46(3)                                                              --------->ARR11(3)       ------>ZmHOX2a(1)                               <-----------GT1               --------->AHL20(2)      --------->ANAC46                    <---------ZAT14                 ------->GAMYB--------->RVE1(1) ===HOX2a_HOX2a                           --------->ZAT14              --------->MYB52(1)   --------- ---------GLK1(2)           <---------ALFIN1 --------->ANAC46         --------->MYB46(3)--------->GLK1(2) -->ZmHOX2a(1)       <---------ARR11(3)  <----------DOF2    ------------>CBF      --------->AHL20(2)   tcgattctcctccaccggttcaagagctctccacttggggagactttactcaacattttactctcaatttcaacaacgggggaataaaaaaatctaacag  5755300                      <---------ANAC46                     --------->ATERF1(1)                     <------NtERF2                    ------>NtERF2                    <---------ATERF1(1)                   --------->DEAR3(1)                   ----------->HVH21                   <---------DEAR3(1)               <---------LBD16             <---------ARR14(2)        --------->LBD16            <---------GLK1(1)      <---------ARR14(2)                                           -----   <------NtERF2<---------ANAC46  --------->GLK1(1)                                             ----- <---------ANAC58 --------->ATERF1(1)<---------HSFB2a(2)                                       <----- <---------ANAC46--------->LBD16  <---------GLK1(1)                                           ------- <---------ANAC58------>NtERF2 <---------TOE2(3)              <------ZmHOX2a(1)  --------->TOE2(3) >MYB52(1)  --------->GLK1(1)  <---------TOE1(3)  <------ZmHOX2a(1)------------>CBF        <---------GLK1(1)   aaggcgtagtcaagagttccggcgacgggaattagggtttccgaagtagagaggaaggaaacgaggagaaccaatttgaaatgccttaattcgaattcct  5755400                                                                                         --------->ZAT14                                                                                 --------->DAG2     <      <---------TOE1(2)                                                    ----------->GT1 ---------- ---->LBD16                                                              ----------->GT1 --------->ZAT18 ->ZmHOX2a(1)                                    ---------->DOF2    --------->MYB52(2)   <---------ZAT14 ----LBD16                             >>>>>>>>>MYB2            <---------MYB46(3)       <---------ZAT18 ---->RAV1(2)    <---------GLK1(2) <------ZmHOX2a(1)          <---------MYB52(1)---------->DOF2  ----   gggtctcgctcgttacacaaattcttcgattttgagaggaaaaccaattttcaaagcccttactgtttgttagtggggagaaaaaagcgagcgcagtata  5755500           <---------ANAC46                           <----------DOF2           <---------ANAC58               --------->ZAT18           <---------ANAC58      <-----------------AGL2    <---------HSFB2a(2) <------ZmHOX2a(1)               ----------------->AGL1    --------->HSFB2a(2)                      < ----------ID1                 <-----------GT1 <------------CBF ----------->GT1                 <---- ->GT1    <---------------------WRI1 <------------CBF --------->GLK1(1)             ------>ZmHOX2a(1) ------>DOF2             ----------->GT1  <---------ZAT18  ------>ZmHOX2a(1)     *TSS     <----------DOF2   aaaggacacgatgtcgttttatactaggggaaaaaaccatattgggccctattgggctttcctagatggaaaatttcaaaatagtcctattactttctct  5755600                 <-----------GT1                 --------->ARR11(3)                 <---------ARR14(2)                             --------->ATHB12                 --------->ARR14(2)                          <---------At4g35610                 <---------ARR11(3)           <---------At4g35610   --------->ATHB12                --------->CCA1(1)             --------->At4g35610 <---------WOX13(1)    ----------->GT1  ------>ZmHOX2a(1)  <---------ANAC58     --------->At4g35610            <-------- ---------YAB1  --------->RVE1(1)       <---------ANAC58   <-----------RAV1(2)<---------TOE2(3)     - ------DOF2 --------->AHL20(2)   <----------DOF2       >>>>>>>>>>GATA-1  --------->ATHB12   ---------   ttaaaattgtaaaaaaaaatatcctctctcttgttctttctcgcgttctgctctctcgatttcaggtgattgatttgattagggttcgagttttagctca  5755700                  <---------ICU4                  --------->ATHB12                            <---------ICU4                  <--------HAHB4                              --------->YAB1                  --------->YAB1                 <---------------AGL15                  -------->ATHB1                 --------------->AGL15                  --------->ATHB51              <-----------------AGL1                 --------->ICU4                 <-----------------AGL3                 <---------ATHB12               <-----------GT1    <---------ANAC46       <---------At4g35610                      <-----------------AG     <---------ANAC58                         <-----------GT1--------->ICU4                      <---     <---------ANAC58        <---------HSFB2a(2)<-----------------AGL2                    <----------DOF2 -At4g35610    --------->WOX13(1)      <---------MYB52(1)    <---------ATHB12      <---------MYB52(2) -------->ATHB12 <---------ATHB51<---------GLK1(1)      ----------->GT1            --------->MYB46(3) >At4g35610 <-----------HVH21--------->HSFB2a(2)----------------->AGL2      <----------DOF2     <----   attcattgcttctgcgtcaattattaggcttctagatttctgtttttttttctctatatggtaatcatgaagtgtatgctttgcaactatcgattttcgg  5755800  Previous    Next  AGI:  At1g16800.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT4G30100.1); similar to hypothetical protein OsI_030842 [Oryza sativa (indica cultivar-group)] (GB:EAZ09610.1); similar to hypothetical protein OsJ_028719 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45236.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41676.1); contains domain SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 (PTHR10887:SF27); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain no description (G3DSA:3.40.50.300); contains domain P-loop containing Range:  from: 5745516    to: 5755256    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g16810.1    Description:  similar to CGI-144-like protein [Solanum lycopersicum] (GB:CAC81814.1); similar to Os02g0727500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047997.1); contains InterPro domain Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865) Range:  from: 5755581    to: 5756888    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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