Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->ANAC58                                                              ----   <---------ALFIN1--------->ANAC46                                                 <------ZmHOX2a(2)   <-----------GT1 --------->ANAC58   <----------DOF2                             --------->WOX13(1)   --------->REM1(1)           ------->TEIL           =====================================HOX2a_HOX2a -YAB1    <---------CCA1(2)------->TEIL               <------ZmHOX2a(1)   <-----------HVH21      ----   ctgttacacctcttatcttccaagccctgtatgtatcggactttgttatccctagaggataatggaatgcagtctgtgtcatatcgatcaacaatttcga  5594800                                                           <---------At4g35610                                                           <---------ZAT2                                                   <---------YAB1                                                   <---------AHL20(2)                                                   --------->AHL20(2)                                              <---------AHL20(1)                                             --------->AHL20(2)<---------TOE2(3)                                   --------->ARR14(2)      --------->ZAT2                      --------->AHL20(2)--------->ANAC46   --------->At4g35610           ------->TEIL        <---------ATHB12--------->AHL20(2) ---------->DOF2               ----- ----->WRKY12     --------->YAB1--------->YAB1--------->AHL20(1) <------ZmHOX2a(1)         <---------ALFIN1 ------->HVH21    --------->AHL20(2)  --------->ANAC46 <---------REM1(1)   ---------->DOF2<-------TEIL   tgacctgatcatgtatgtaataaaaaaaatcaaatcatatacacaaaatatatataattgtagctgaggaaagtgagaaaagacttaaaacatacaccct  5594900                                        ------->GAMYB---------->DOF2                           <------ZmHOX2a(1)      --------->ANAC58                       --------->LBD16 <---------ALFIN1 --------->ANAC58     <---------HSFB2a(2)   --------->LBD16                    <---------ARR11(3)<--- --------->ANAC58     --------->HSFB2a(2)  --------->ANAC46       ----------->RAV1(2)       --------- ---->LBD16    <---------ATHB12---------->DOF2    --------->ANAC58--------->At4g35610   ---------->DOF2   gagaagcaaatagacaaatcactcccagaggaataaagacaacacccgagacaagaaaagtcagaatcacctgcaaaacaagataaccaaaaaagagttt  5595000                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                 --------------->AGL15              <                                                                 <---------------AGL15              <                                                                ----------------->AGL1         <-----                                          <----------DOF2       <-----------------AGL1    <---------AtLEC2          --------->TOE1(2)       <-------GAMYB                 <-----------------AGL2    <---------ANAC58 --------GT1         <-----------GT1  --------->REM1(1)     <----------DOF2               <---------ANAC58 -->GT1 <---------TOE2(3)        ----------->GT1   --------->ATHB12            --------->ICU4<-------   aactatattaaacgttggaaattttacttctgagactgttacatctttatgagttattgaagctttacccattttggagtaagaattggtttgcatgctg  5595100          ----------->GT1          <---------ANAC46          <------MYB83          <------MYB46(1)         <---------MYB46(3)         --------->MYB59        <---------ANAC46     ------>ZmHOX2a(1)     <-----------RAV1(1) -------->HSFB2a(1) ---------HSFC1(2) -------->At4g35610 ---------At4g35610 -------->HSFC1(2)          <---------REM1(1) ---------HSFB2a(1)   ------->TEIL                                                         --------->ZAT6 ---------ZAT2 --------->ARR11(3)           ----------->RAV1(1)                       --------->YAB1 ----HSFB2a(2) <---------ARR11(3) ---------->DOF2          <----------DOF2            --------->TOE2(3) --ZAT2<---------MYB52(1) --------->At4g35610        <---------YAB1         --------->ANAC46        -   gaagctcctgttgggtaaatcttgaatctgatgaagcaaagttagccaacaaattatgtttctttgttgacatattctaagaaacttatcttaagactag  5595200                                      <-------TEIL                            <------------CBF                           --------->ATHB12                           <---------AHL20(2)                          <---------AHL20(1)                          --------->AHL20(2)        ----------->GT1   <---------AHL20(2)       --------->DAG2     --------->AHL20(1)     ---------->DOF2  <---------AHL20(2)           ----------->RAV1(1)   <---------ALFIN1   --------->YAB1    <---------AHL20(2)           --------->MYB46(3)     --------->REM1(1) -------->GLK1(1)    --------->AHL20(2) --------->TOE2(3)               --------->ZAT14 <-----------HVH21   agaaatcaaaaggtatcacacattttaatttattgggagttacattagtccaacaacacaaaatgggtttcaactacacccttgttaaactttcacatga  5595300                                                                                                 <---                                                                                                 ----                                                    <---------ZAT14    <---------ICU4           <----                                                    --------->ZAT18    -------->HAHB4          <-----                   ------>MYB83                     --------->ZAT14    --------->YAB1          ------                   ------>MYB46(1)                  <---------ZAT18 --------->YAB1             <-----                 <---------------AGL15            --------------->AtSPL8  --------->YAB1       <-----                 <---------MYB46(2)  --------->ANAC58             <---------YAB1               ------                 <---------MYB59 --------->ANAC58<---------ANAC58 <---------AHL20(2)       <---------AHL20(2)          <<<<<<<ZML2 ---------->DOF2--------->ANAC58             --------->AHL20(2)      --------->AHL20(2)       --------->HSFB2a(2)       --------->ANAC46<---------ANAC46--------->TOE2(3)     ------>ZmHOX2a(1)       <---------HSFB2a(2)       --------->ANAC58<---------ANAC58--------->YAB1     <-----------GT1   aatggattactagaacataccaaacaaagaagaaaacgcaagtacccatttgtgtgtactagactaatattaataatcggaattttttcctatataatat  5595400           ----------->GT1       ------------>CBF      --------->ANAC46   --------->ZAT14   --------->ARR14(2) ------ARR11(3)                                                                           --------->ARR14(2) ----->ARR11(3)                                                                           <---------ARR14(2) -----CCA1(2)                                                                        ---------->DOF2 ----AHL20(2)                                --------->YAB1                 <---------ARR11(3) --->ARR11(3)                        ---------->DOF2         ------>ZmHOX2a(2)   ---------->DOF2 ----ARR11(3)                     --------->YAB1         <---------YAB1    --------->REM1(1) ----AHL20(1)                  <------------CBF        --------->YAB1 --------->ANAC58    --------->GLK1(2) --->AHL20(1)                 <---------AtLEC2        <---------YAB1  --------->ANAC58   <---------GLK1(2)   atctgtatacacaatgtaaattttagtcatttgcattgataaagaaatcatagaatatgatgatcgagagactagcaacatctcaaagaaagaatctgag  5595500                                                               ---------->DOF2                                                              <---------YAB1           --------->SPL7                                                            --------->AHL20(2)         <-------TEIL                                                            --------->YAB1         <---------------AtSPL3                                                      ----------->GT1          --------->ZAT6                                                <---------TOE2(1)         --------->LBD16                     <-------TEIL               <---------TOE1(1)        <---------HSFC1(1)<------ZmHOX2a(2)           <-----------GT1         <---------ARR14(2)--------->ALFIN1    <---------HSFB2a(2)        <     --------->TOE2(3)--------->YAB1      ------>ZmHOX2a(2)--------->ICU4--------->HSFB2a(2)   ------   ttcttaacattattttcaatacgttcataacatagaagaactgatccattacgaggtggaaattataaaggcattccagaaacactaggtacgatcccaa  5595600                    ---------->DOF2                 --------->LBD16                --------->ANAC58                --------->ANAC46                --------->ANAC58                ------->GAMYB                --------->ANAC46                --------->RAP2.6(2)               <---------LBD16                <---------At5g28300        <-----------HVH21                    <-----------GT1    <---------GLK1(2)                        --------->MYB52(1)    <---------ARR14(2)              --------->YAB1    --------->ARR14(2)  <----------ID1    --------->YAB1      ----------->GT1               <------ZmHOX2a(2) -------TEIL <---------ARR14(2)   ------------------------>ANAC81                          --------->ARR11(3) ---->DOF2   --------->ARR14(2)--------->AHL20(2)--------->LBD16                           <---------ARR11(3)   agtacagatttgtcaaatccgcaaaagaaacaaaaaaatcagaaaaataaccgcaaatgacaaaatgtaacaaaaattagggaataggttagagatcaca  5595700  Previous    Next  AGI:  At1g16360.1    Description:  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein. similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G79450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64944.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) Range:  from: 5593295    to: 5595173    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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