Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         ---------->DOF2                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                                <-----------HVH21                                                                                <-----------TGA1                                                                               --------->bZIP60(1)                                     --------->TOE2(3)                         --------->ANAC46                                     --------->TOE1(3)       --------->ANAC58 --------->RAP2.3(1)                                ---------->DOF2              --------->ANAC58 <------NtERF2                             --------->ANAC58         --------->ZAT2          --------->ATERF1(1)                         --------->ANAC46             <---------At4g35610    <---------ORA47(2)            ------->GAMYB--------->ANAC58             --------->At4g35610    <---------ATERF1(1)           --------->ANAC58  --------->ANAC58         <---------ZAT2         <---------RAP2.3(1)           --------->ANAC58 ------->TEIL        ---------->CDC5             <---------RAP2.3(3) ----->RAV1(1)           --------->ANAC58    --------->At4g35610            <---------DEAR3(1)   ----   caattacagagcaacgcaaattcaaacacgaacccaaagccttaaactgctcagcgagctggaacgctagctctctagtcggcgtcactacaagcgcgaa  5570100                        <------NtERF2                        --------->At5g28300                      <---------DEAR3(1)                      <---------DREB2C(2)           ------>ZmHOX2a(2)          <------ZmHOX2a(2)                                --------->ZAT6         <---------ARR14(3)                             <-----------GT1         <---------ARR14(2)                      <---------At4g35610         <-----------ARR10                       <---------ZAT2         --------->ARR14(3)                      --------->At4g35610         --------->ARR11(3)                     ----------->RAV1(1)         --------->ARR14(2)                  --------->ANAC46                                   -----         <---------ARR11(3) <---------ANAC46 --------->ANAC58                                 <------        <------ZmHOX2a(1) --------->ZAT14    --------->ANAC58               --------->ANAC58  ------- ----->HSFB2a(1)  ---------->DOF2          --------->MYB52(1)               --------->ANAC58<--------   gactccataaggatcttcagcaaggcggtgaagtataggtagagcaaacgcagcagttttaccactaccagtctgagcaagccctaaaacgtctcgtccg  5570200                                          --------->ANAC58                                          --------->ANAC55(2)                                          --------->ANAC46                                          --------->ANAC58                                          <---------ANAC55(2)                                       <---------ARR14(2)        --------->ARR14(2)   <-----------ARR10                   --------->ARR14(2)      <-------MYC3   --------->ARR14(2)               <------MYB83              --------->ANAC46   --------->ARR11(3)               <------MYB46(1)         <-----------GT1      --------->At4g35610   <---------ARR11(3)             --------->ALFIN1      <----------DOF2          <---------At4g35610  <---------CCA1(2)             <---------ANAC58     <---------ARR11(3)          <---------ZAT2 ----------->ARR10              <---------ANAC46     --------->ARR11(3)   <---------ZAT18 ---->LBD16  --------->ANAC58   <---------ANAC58   --------->ANAC58     <---------ZAT18 ---LBD16    --------->ANAC58 --------->ZAT14      --------->ANAC58  <---------At4g35610 -->SPL7     --------->ANAC46 <---------ZAT14------->TEIL  <---------REM1(2) --------->ANAC46 -SPL7  --------->ANAC46     ----------------------->TaNAC69(2)------->MYC3<---------ALFIN1   gctaatatcttcggcacgcagtgagtttgaactggagtgggtttacgcatcccaagctctttacacgtttccactgcccactcagctaatccgagccctt  5570300                     <---------ANAC46                     --------->ETT(1)                    <------NtERF2                   <-----------HVH21                  <---------ANAC46                  --------->ALFIN1                <---------ANAC58                <---------ANAC58               <---------AtMYB61               --------->ALFIN1            <---------ARR14(2)            --------->ARR14(2)           <------NtERF2           <-------GAMYB          <---------MYB46(3)       <---------YAB1         <---------RAP2.6(2)  <---------ZAT6                    <---------ARR14(2)    <---------HSFB2a(2)         <---------ANAC58    <---------TOE1(3)                  --------->ARR14(2)    --------->HSFB2a(2)         <---------ANAC58--------->ZAT2                         <---------ZAT14      <---------ANAC46         <---------ANAC46<---------ZAT2 ----------->GT1     <------ZmHOX2a(1)        <---------LBD16        <---------LBD16<------NtERF2<------ZmHOX2a(1)     <---------TOE2(3)        --------->GLK1(2)   cgaaattagtggcggatgtggtgtcggagctagggttaggattagtgaatttctcaaattgaggagtattctggtccgaatcaagtttctgggactgaat  5570400                                                                     --------->ARR14(2)                                                                   --------->MYB55(2)                                                                   <------MYB83                                                                   <---------DEAR3(2)                                                                   <------MYB46(1)                                                                   --------->MYB52(2)                                                                   <---------MYB46(3)                                                                  <---------AtMYB61                                                                 <---------MYB52(1)                       --------->LBD16                          <-------GAMYB                      <---------LBD16                          <---------ANAC46                      <---------ANAC46                         <---------DEAR3(1)                      <---------ANAC58                       ------>NtERF2               --------->YAB1                     <---------LBD16                         --------->LBD16           ------->TEIL              <------ZmHOX2a(1)    <---------YAB1          <---------LBD16          <---------YAB1            <---------TOE2(3)      --------->ICU4         ------>ZmHOX2a(1)     <----------DOF2   ---     <---------TOE2(3)<---------ANAC58   <---------YAB1------>ZmHOX2a(1) ------>ZmHOX2a(1) --------->At4g35610   gtttactacggttttaggatttttgcgggatttagacatgatggtgattcccccttcctcctccggcgttggttcctccattctttatgaatcagaagaa  5570500                                                    --------->DEAR3(1)                                                   <------NtERF2                                                  ------>NtERF2                                                 --------->RAP2.3(2)                                                 --------->ANAC46                                                 --------->RAP2.6(2)                                                --------->ERF1                                                --------->ATERF1(1)                                                --------->MYB46(3)              <---------ANAC58                                               --------->At4g35610          --------->CCA1(2)                                     <-------TEIL--------->DEAR3(1)       --------->CCA1(2)                              <------NtERF2    <---------At4g35610       --------->ARR11(3)                             ----------->GT1  --------->MYB52(2)     XXXXXXXXXXXXXXXXXXXX>MIR861-5P                             --------->LBD16<---------MYB52(1)       --------->LBD16                     <---------HSFC1(2)   --------->MYB52(2)        <---------HSFB2a(2)   --------->ATHB12              --------------------->WRI1 <-------TEIL <---------MYB52(1) <---------ARR11(3)         <------------CBF   --------->LBD16<-------GAMYB            --------->HSFB2a(2)   --------->YAB1       --------->ARR11(3)  <---------LBD16<---------MYB46(3)       <---------LBD16       <---------YAB1 ------>AHL20(2)     --------->HSFC1(2) <---------MYB52(1)   <------------CBF   <---------ANAC58    -   aaaaatgaagaaattggtttcgaagtatcgccggaaaaatacgttcgttagccgccgttcttagattgttctggagatatatgcgtaaactatgataggg  5570600                                                      <----------DOF2                                                   <---------TOE1(3)                                                <---------MYB52(1)                                               <-------GAMYB                                              <---------DEAR3(2)                                              --------->LBD16                                              <---------MYB46(3)     --------->AHL20(2)                                       --------->ARR14(2)            <---------AHL20(2)<------------CBF                       --------->TOE1(3)     <---------TOE2(2)      --------->AHL20(2)--------->ATHB12               <-----------GT1         <---------GLK1(2)  <---------At5g28300         <---------AHL20(2)          --------->LBD16   --------->TOE2(3)<---------TOE1(2)------>MYB83           <---------AHL20(2)        <---------LBD16<---------MYB59 <---------ARR14(2)<-----------GT1    <---------LBD16 <-------- -------->GLK1(1)      --------->TOE2(3)    <---------LBD16   ------>MYB46(1)   <----------DOF2   ggagttcaaacccggtttatccaaacctaaacttaatatcggaatcgccggttaagcttttaccatcccatttaatttcgcggtttatttattgagctaa  5570700                                                                                                 ----                                                                                         <---------ATHB12                                                                                       --------->WOX13(1)                                                                                     <---------MYB52(1)                      <---------ARR14(2)                                            --------->At5g28300      --------->CCA1(2)                                                        <---------REM1(2) ----     <---------ARR14(2)                                                        <---------ZAT14  -----     --------->ARR14(2)               <-----------GT1                          --------->ZAT14-------     <---------ARR11(3)       <------------CBF                             <-----------GT1<---------ICU4     --------->ARR11(3)     <---------YAB1                            <---------AHL20(2) <---------YAB1 -At4g35610           --------->ARR14(2)       ---------->DOF2    ----------->GT1  ----------->GT1   tttcgaagatttgaatgttttgcatatttgaagattgtttttactctttgaaagaaccagtttgtcatttgttaaattttctacacagttaatcattcat  5570800                       <---------AHL20(2)                   <---------RVE1(1)                   <---------CCA1(1)                  <---------ARR11(3)                  --------->AHL20(1)                  <---------AHL20(1)                      <---------YAB1       ---------->DOF2      --------->AHL20(1)                                ----------->GT1       --------->AtMYB61      --------->AHL20(2)                            --------->ARR11(3)  --------->ANAC58      <---------AHL20(2)                            <---------ARR11(3)  --------->ANAC46         ---- ----->TOE2(1)   --------->YAB1                    <---------GLK1(1)    --------->ANAC58  ----------- ----->TOE1(1)---------->DOF2                      --------->GLK1(1) --------->TOE1(2) --------->ARR14(2) ---------->AtSPL8--------->ARR11(3)         ---------->DOF2    --------->MYB46(3)     <---------ARR14(2) -->YAB1  <----------ID1---------->DOF2XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B --------->ANAC55(1) <--------   cgtacaaataaaatgacaaagatatttaaagtcaaaaacagaaaccagaaaggaaatcttgtgataacaaacacacgaaaccaaagctaaatccgttaat  5570900                                           <---------HSFC1(2)                                           --------->HSFB2a(1)                                           <---------HSFB2a(1)                                           --------->HSFC1(2)                                           --------->ZAT2                                           --------->At4g35610                                           <---------At4g35610          --------->MYB46(3)                                           <---------ZAT2----------->HVH21                      <----                                          ------->TEIL  <---------------AGL15         --------->YAB1                                       --------->ANAC46----------------->AGL1        <---------ATHB12                                  <------ZmHOX2a(1)    <-----------------AGL1       ------>MYB83----- ----->YAB1                     <---------TOE2(2)------>ZmHOX2a(1)---------->DOF2   ------>MYB46(1) >GT1                           <---------TOE1(2)--------->LBD16<------ZmHOX2a(1)  --------->WOX13(1) -MYB52(1)          <---------TOE2(3)--------->MYB52(1)<-----------------AG --------->YAB1      <----   cttcatcatatgtgtcttaataaacgttgtctcataggataacgcagcttcctgaatccctgatgaggaaaagaaccatcaaaaccaatcataaatcaga  5571000  Previous    Next  AGI:  At1g16280.1    Description:  DEAD/DEAH box helicase, putative. Identical to Putative DEAD-box ATP-dependent RNA helicase 36 (RH36) [Arabidopsis Thaliana] (GB:Q9SA27); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65105.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650); contains InterPro doma Range:  from: 5568476    to: 5570481    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g16290.1    Description:  similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ78585.1); similar to Os02g0170900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046030.1); contains InterPro domain Lytic transglycosylase-like, catalytic (InterPro:IPR008258) Range:  from: 5570747    to: 5573532    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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