Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ------>ZmHOX2a(1)                              <---------YAB1                              --------->ICU4             ---------->DOF2                          ------>NtERF2                 --------->YAB1                         --------->ANAC58<---------YAB1<---------ATHB12                         --------->ANAC46--------->AHL20(2)                         --------->RAP2.6(2) --------->AHL20(2)                 --------->At4g35610 =====================================HOX2a_HOX2a             ------->TEIL--------->ANAC58<---------AHL20(2)  ----------->RAV1(2)                <----             --------->ARR14(2)<---------ICU4<---------AHL20(2)                           --------->ICU4             <---------ARR14(2)--------->ATHB51---------->DOF2     <------ZmHOX2a(2)  <---------AHL20(2)   atgctctcatccatgaatccgatgaagacgccattattcctatataattaaaagctaatcaaagcctggatcacttccattgaaattttaaaatgatcaa  5556400                --------->MYB52(1)                ----------->RAV1(1)             --------->CCA1(2)            --------->ARR14(2)            --------->AGP1            <---------ARR14(2)            <---------ARR11(3)            --------->ARR11(3)       --------->TOE1(2)             ------>ZmHOX2a(2)      --------->ANAC58              --------->CCA1(2)      <---------ANAC55(2)           <------ZmHOX2a(2)            --------->WRKY45      --------->ANAC55(1)          --------->AGP1                --------->WRKY38(1)      --------->ANAC55(2)          <---------ARR11(3)            --------->WRKY12      --------->ANAC46             --------->ARR14(2)       <------NtERF2                      ------      --------->ANAC58             <---------ARR14(2)       ------>NtERF2                      <-----     <-------TEIL           ----------->RAV1(1)            --------->DEAR3(1)                  ------  --------->CCA1(2)------->GAMYB   --------->ARR11(3) ---------->DOF2                 --------->ANAC58 -----TOE2(3)<------ZmHOX2a(2) ---------->DOF2 <----------ID1  <----------DOF2        --------->ANAC58   ggatatatacgtaagatccaacagaaacaacaacaaagatctacaaattgagacaaaaacgcggcctttgactacaattttgaggcacaaggctcaaaat  5556500           --------->ARR11(3)         <------ZmHOX2a(2)           <---------ARR11(3)        --------->ARR11(3)          <------ZmHOX2a(1)          <---------ARR11(3)          ===================================HOX2a_HOX2a   --------->CCA1(2)     <-----------GT1        <-----------RAV1(2)   <---------ANAC55(2)               <---------WOX13(1) --->ARR14(2)        <-------TEIL  ----------->ARR10 --------->MYB52(1)        <---------LBD16 ----ARR11(3)--------->YAB1<---------YAB1       <-------TEIL               <---------ATHB12         - --->GLK1(2)<------ZmHOX2a(2) --------->LBD16  --------->GLK1(2)       <---------YAB1       ---------   ctgaaatttacaggatcatgaagtccattatcaggggaagatcagagagattcagtaacagatataatccctcatcaatgactcggattgacaaaaataa  5556600                                    --------->TOE1(1)                                   <---------LBD16                             --------->ATHB51                             <---------ICU4                             <---------AHL20(2)                            <---------AHL20(2)                            <---------AHL20(1)                                                <------                            --------->AHL20(2)                                               --------                          ------>MYB46(1)                                                    <-------                   <---------ANAC58--------->HSFB2a(2)                              <------ZmHOX2a(2)            ------>ZmHOX2a(2)--------->AHL20(2)                        --------->SPL7------>ZmHOX2a(2)     ---------->DOF2    <---------MYB59                              <---------SPL7<---------ARR14(2) ---------->GT1    <---------ANAC58<---------HSFB2a(2)           <---------ZAT2    --------->ARR14(2) >YAB1   <------ZmHOX2a(1)------>MYB83    <----------DOF2        --------->ZAT2   <---------GLK1(1)   catcgtttaaaggatcgaattgcttaccaaattatttctcggacctttgtattcttcaatttgtccgagctcgtaccatgtaagagatcggcttattaaa  5556700                                                                   --------->ZAT2                                                                   <---------ZAT2                                                                 <--------P                                                             <---------ANAC46                                                            <---------LBD16                                                           ------->TEIL                         --------->At5g28300               --------->MYB52(1)                    --------->MYB46(3)                   --------->MYB46(3)                  --------->ARR14(2)                    --------->ANAC46                 <------NtERF2                          --------->ANAC55(2)                --------->LBD16                         --------->ANAC58               --------->LBD16                      <-----------HVH21              <------NtERF2                      ----------->RAV1(2)       --------->ZAT14   --------->LBD16       <-----------GT1--------->LBD16       ---------->DOF2       <---------ZAT14<---------At5g28300 --------->ATHB12<---------ALFIN1        --------->ANAC58 ---AHL20(2)  <---------LBD16            --------->ICU4 --------->ANAC58          --------->ANAC58 ->AHL20(2) <---------DEAR3(1)           <---------YAB1 <---------ANAC55(2) <-----------HVH21    <--- --AHL20(2)--------->ATERF1(1)      <------ZmHOX2a(1)----------->HVH21  --------->PCF2         ------   tgttgagtctgtagtcgccggaatcaccgtgaatcggaggagaatgattcaacctgtcacgcaccgggtagcagggcccgtcgcaagaaagatgagataa  5556800    --------->ZAT2    --------->At4g35610    <---------At4g35610                              ----------->GT1    <---------ZAT2                               --------->CCA1(2)   ------->TEIL                     --------->ARR11(3)                   ---------->DOF2 -------ID1                 <-----------GT1  --------->DAG2            <---------TOE2(3)      ------- ---->DOF2          ------>NtERF2  *TSS     ---------->DOF2   ----------->GT1             --------->At4g35610   agacgaagctgaaataaaacgacgcggttttaacttgttatcttggaaaagttatgggttaaattagttatttaagaaagtatgcgttaagaagcagaaa  5556900                                                         ------>ZmHOX2a(2)                                                       --------->ARR11(3)                                                       ------->TEIL                                                <---------AHL20(2)                                                <---------AHL20(1)                     ---------->DOF2            --------->AHL20(1)                   --------->ARR14(2)                    <---------ATHB12            --------->AHL20(2)                 *TSS  ------>ZmHOX2a(1)                ------------>CBF               --------->YAB1                     <---------ANAC58    --------->AHL20(2)         --------->AHL20(2)      <---------AGP1             <---------ANAC58    <---------AHL20(2)         <---------AHL20(2)<---------YAB1               <---------ANAC58  <---- --->DOF2       <------ZmHOX2a(2)    <-----------GT1   <---------ARR11(3)     <---------ANAC58  <----   gaacatataaatgaagggatcaataaagaatatttaaattttcgacccattataatggatctatccatctcatgcctgtttcttccgtctcctctcttcc  5557000                                                                                   <---------MYB52(1)                                                                                   --------->DOF5.7(2)         --------->LBD16                                                          --------->TOE2(3)         ------>ZmHOX2a(1)                                                        --------->TOE1(3)     <---------ARR14(2)                                              <---------ANAC58     --------->GLK1(2)                                               <---------ANAC58     --------->ARR14(2)                                           --------->ARR14(2) <---------DOF5.7(2)    <---------GLK1(2)                                      <---------WOX13(1)   <---------TOE2(3) -----ANAC58                            <---------ICU4   --------->ATHB12       <---------YAB1 -----ANAC58         ----------->HVH21  --------->YAB1  <---------YAB1 <---------MYB52(1)   ttgccagaatcctgagtttctctctgactgtgcttagttccatcataactatatcgttctgattgcagtttccgtttcgattatcgttaatggtgttttt  5557100          ----------->GT1        ----------->GT1       --------->DAG2      ---------->DOF2                                                 <---------ARR14(2)   <---------HSFB2a(2)                                                --------->ARR14(2)   --------->LBD16                                   <---------HSFB2a(2)   --------->HSFB2a(2)                               --------->HSFB2a(2)     <-----------GT1  --------->HSFB2a(2)                                --------->HSFC1(1) <-------TEIL  <---------HSFB2a(2)                                <---------HSFC1(1)--------->CCA1(2)  <---------LBD16                           --------->ANAC58          <---------ARR11(3)  <---------ANAC46   ---------->DOF2        --------->ANAC58    <-----------RAV1(2)            <----- <---------LBD16  <----------DOF2         ---------->DOF2      <------ZmHOX2a(2)             <-------   gtttccgggaaagtgataaactttgaagcgcgattttggtgttctaaagcaagttcgagaaggggatcagaagatacatttacaatctctcgagtacgat  5557200                                                                   <----------DOF2                                                                  <---------DAG2                                                             <----------DOF2  <-------TEIL  <---------At4g35610                          ------>ZmHOX2a(1) ----ARR14(2)   --------->At4g35610          ------->TEIL   --------->TOE2(3)              ---------- --YAB1    <---------ZAT6            ---------->DOF2 --------->TOE2(3)            --------->YAB1   tcggttcatgtaagtgttagctctcttgttcttccttcacaaagttgaatctaaatctcaatcctttaccttttctcttcaaaatcatgttttgtcttaa  5557300  Previous    Next  AGI:  At1g16240.1    Description:  SYP51 (SYNTAXIN OF PLANTS 51). Identical to Syntaxin-51 (SYP51) [Arabidopsis Thaliana] (GB:Q9SA23); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.1); similar to hypothetical protein OsI_005463 [Oryza sativa (indica cultivar-group)] (GB:EAY84230.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region (InterPro:IPR000727); contains InterPro domain Syntaxin/epimorphin, conserved site; (InterPro:IPR006012) Range:  from: 5555001    to: 5556835    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g16250.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At1g16250 [Arabidopsis Thaliana] (GB:Q0WW40;GB:Q9SA24); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G63220.2); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G63220.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57460.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro dom Range:  from: 5556983    to: 5559514    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version