Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   <---------ZAT2                                    <---------MYB52(1)                           <---- <---------At4g35610                          ------>NtERF2  --------->At4g35610            <-------- --------->ZAT2         <-----------RAV1(1)   <---------ALFIN1                              <-------- -----------RAV1(1)--------->PCF5            --------->MYB46(3)                          <-----------GT1 ------ALFIN1 ----------->RAV1(2)            --------->DEAR3(1)                     <---------YAB1 ---PCF5      ======================RAV      ----------->HVH21       ------->TEIL--------->GLK1(2) >RAV1(2)     <---------At4g35610           --------->LBD16  <---------At4g35610<---------GLK1(2)   cactgctggtctcttcatctggtcccttgttgctcccattctcttccccgaccgtgagttctgagctaatgcatctacttgagattctgaataacttttc  5542700                             ------>ZmHOX2a(2)                           <---------ARR11(3)                    --------->AHL20(1)                                     <-----------RAV1(1)                    <---------AHL20(1)                                     <---------MYB46(3)                    <---------ARR11(3)                          <---------YAB1 ------->TEIL       --------->ARR11(3)  --------->YAB1          --------->ANAC58 -----AtLEC2     --------->AHL20(2)    <---------YAB1           --------->ANAC58 -DAG2           <---------AHL20(2)  --------->YAB1           --------->YAB1           --------->HSFB2a(2) --DOF2    ----------->GT1 --------->ARR11(3)        <---------ZAT18     <----------DOF2   atgaatcttcaatttgtaaaaaaatattcgatctttctactataatagaacatcgtgtgcttaatcacgaatggcctttgttggcccttctgtaatatga  5542800                      --------->ANAC55(2)                 <----------DOF2          <---------AHL20(1)          --------->AHL20(1)                                                                        -          <---------AHL20(2)                                        <---------ARR14(2)              <          --------->AHL20(2)                                        --------->ARR14(2)         ------         --------->AHL20(2)      --------->At4g35610     <---------ANAC58                <------MYB83         <---------AHL20(2)      <---------At4g35610     <---------ANAC58                ----------->GT1     --------->AHL20(2)          ----------->RAV1(2)     <---------ANAC46 <----------DOF2<------MYB46(1)     <---------AHL20(2)    --------->ICU4        --------->ANAC46   <---------GLK1(2)   --------->MYB59   agatgatataaataaattcctttctcgtaattttcatctgtctcgacttctccacaattgcgttttgcccgattcgcgtttgtgttttgtttggtcaaaa  5542900                                                                      <---------YAB1                                                                      --------->ICU4                                                                    --------->YAB1            <------MYB83                                   --------->ATHB12            <------MYB46(1)                               <---------ATHB12       --------->ANAC58                                   <---------YAB1       --------->ANAC58                          <---------------AtSPL8     <------NtERF2                     --------->YAB1     <------ZmHOX2a(2)   <---------ANAC46                   <---------YAB1  --------->DEAR3(2)  <------NtERF2                     --------->YAB1   --------->MYB52(1)             --------->DAG2  --------->RAP2.3(1)           <---------AHL20(2)   ------->TEIL  --------->ICU4   --------->MYB59 ------>NtERF2                  --------->AHL20(2) <---------SPL7  <---------YAB1   <---------TOE2(3) <---------ATERF1(1)           --------->AHL20(2)--------------->AtSPL3           <--------P    ----- -------->ALFIN1           <---------YAB1    <<<<<<<<<MYB98<---------ICU4 --------->YAB1        ----- ---------DEAR3(1)     <---------GLK1(1)  <---------TOE2(2)--------->YAB1<---------YAB1       <------ --->MYB52(1)   <---------YAB1 <---------AHL20(2)<---------------AtSPL3<---------ICU4----------->GT1   cggtggcgcaaggctggtatgaatgaattctgattaaattatcatatgttaaacgtaccgatcattgttatgattattatactggtaaggtagtaaaccg  5543000                                                                               ------->PIF5                                                                               <-------MYC4                                                                               ------->PIF4                                                                               ------->MYC3                                                                               <-------MYC2                                                                               <-------PIF5                                                                               ------->MYC4                                                                               <-------PIF4                                                                              --------->TGA1a                                                                              --------->O2                                                                              <---------TGA1a                                                                              <---------O2                                                                    <-------PIF5                                                                    ------->PIF5                                                                    --------->TOE1(2)                                                                    <-------MYC4                                                                    ------->MYC2                                                                    <-------MYC2                                                                    ------->MYC4                                                                    <-------PIF4                                                                    ------->PIF4                                                                    ------->MYC3                                                                    <-------MYC3                                                                   <---------bZIP60(2)                                                                   --------->O2<-------MYC3                                                                   <---------TGA1a                                                                   <---------O2------->MYC2                                                                   --------->TGA1a                                                                   <---------ANAC58                                                                   =====================bZIP_bZIP                      --------->ATHB12                             <---------ANAC55(2)       --------->AHL20(1)                ====================================MYC_MYB       <---------AHL20(2)                ===============================================MYC_MYB       --------->AHL20(2)                <--------P                <---------ANAC46 <---------GLK1(1)      --------->AHL20(2)<---------WOX13(1)                         <---------ANAC58 <---------At4g35610      <---------AHL20(2)<---------YAB1 ----------->GT1             --------->ANAC55(2)       ------>NtERF2  <---------AHL20(2) --------->ICU4  <---------LBD16           <-----------HVH21--------->ALFIN1  --------->AHL20(2)<---------WOX13(1)--------->LBD16       --------->ALFIN1 ------->TEIL    -------- ------>GT1 <---------ZAT14         <---------LBD16=====================================bZIP_DOF ---->LBD16 --------->ZAT14       <-----------GT1  ==========================bZIP_DOF--------->ARR11(3) ---LBD16   --------->ZAT18<---------TOE2(3)       ---------->DOF2------------>OsbHLH66     <--------   gaaattaaaaaaattgcactggattgattaatgttttatccgggtaaattttagaaagaagggtgtgtcacgtgcgatgcacgtggagctcttgccgcgt  5543100                                              <---------------AtSPL8              <---------ZAT18               --------->ETT(2)               *TSS                             --------->MYB59    --------->ANAC46                      <------------CBF              --------->ARR11(3)    --------->ANAC58                 --------->RAP2.6(3) <---------WOX13(1)<----------DOF2    --------->ANAC58<---------At4g35610 <------NtERF2  --------->ATHB12 <---------ARR11(3) ->LBD16       ----------->HVH21  --------->DAG2  --------->ZAT14    --------->DAG2               <-- -ANAC46 <-----------RAV1(1)     ---------->DOF2  <---------ZAT14   ---------->DOF2            <-----   tttaaaacgctatgttgttgacagcgactgtttgataaagtcggcattgttgtacagtgattgaaaatcaaaaagctcttttaggtcactctctattttt  5543200                                  --------->ARR11(3)                                ----------->ARR10                             <-------GAMYB                            <---------DEAR3(2)                            ----------->GT1                          --------->ATERF1(1)                         <---------ATERF1(1)                         ------>NtERF2                         --------->ABI4(1)                        <---------ATERF1(2)                        <---------DEAR3(1)                        --------->DEAR3(1)                        --------->RAP2.3(3)                       --------->RAP2.6(1)                       --------->ATERF1(1)                       <------NtERF2                       --------->DEAR4(2)                       --------->ORA47(2)                       --------->RRTF1(1)                       --------->RAP2.3(1)                       --------->ERF1                      <---------RRTF1(1)                      <---------ATERF1(1)                      <---------RAP2.3(1)                     <---------O2<---------CCA1(2)                     <---------bZIP60(2)                     --------->bZIP60(1)                     <---------bZIP60(1)                     --------->ANAC46                   <---------TGA2(2)                   <---------ATERF1(1)                  ----------->TGA1<---------ARR11(3)            --------->ZAT18                --------->At4g35610                           --------->At4g35610                <---------At4g35610                           <---------At4g35610         --------->LBD16--------->RAP2.3(2)                  ------->TEIL        --------->DEAR3(1)<------NtERF2                    ---------->DOF2       <---------LBD16------>NtERF2                   <---------DDF1<---------ZAT6 -------At4g35610 ----------->HVH21                  --------->ETT(2)                       --------- ------GT1   <----------DOF2--------->LBD16          <---------ETT(2)                 <--------P <---   cgctccctcgccggactttgctgacgccgccggttatatcttctagtctcattcgtcgacatgaagctcactgttaagactctcaagggtagccattttg  5543300                        <---------MYB52(1)                        <--------P                       <-------GAMYB                   <---------ALFIN1                  <---------REM1(2)                            <---------ANAC46                --------->ANAC46                            <---------MYB59                --------->DEAR3(1)                          --------->TOE1(2)                      <-                --------->At1g77200                         --------->TOE2(2)                      <-                --------->DEAR4(1)                        ------->TEIL   <---------------AGL15     --                --------->DREB2C(2)                       --------->SPL7 --------------->AGL15     --                ----------->HVH21                       <---------SPL7  <-----------------AGL2     <-                ------->GAMYB                          <---------ANAC58 <-----------------AGL1     --                <---------ETT(1)                <---------ANAC58        <-----------------AG      <--               --------->MYB46(3)          <---------At4g35610------>MYB83         <---------GLK1(1)-             <---------ALFIN1        <---------DAG2    <---------ANAC58 <-----------------AGL3   <<<<   <---------TOE2(3)   --------->At5g28300 --------->At4g35610------>MYB46(1)      --------->GLK1(1)< >ICU4      --------->MYB46(3) ------>ZmHOX2a(1)<---------ANAC58        ============================= ------TOE2(3) --------->DEAR3(2)    <----------DOF2  --------------->AtSPL8     <------ZmHOX2a(1)---   agattagggttcttcccaccgacacggttagtccttctccttttccgcttccttggtccgtacctacgtgtaatactgtattaggaaatcagtagattta  5543400    --------->At4g35610 --------RVE1(1)                <---------ARR14(2) --------CCA1(1)                ------>MYB83 ------->CCA1(1)                ------>MYB46(1) ------->RVE1(1)                --------->GLK1(2)                               --------------->AGL15 --------GLK1(1)                --------->ARR14(2)    <---------ANAC46          <---------------AGL15 ------->GLK1(1)               --------->WOX13(1)     <---------ANAC58 --------->HSFC1(1) -------ARR11(3)              <---------------AGL15   <---------ANAC58 <---------HSFB2a(2) -------->ARR11(3)            ==================================================================MADS_MADS <<<<<RAP2.2                 ----------------->AGL1----------->HVH21   <---------HSFC1(1) ---------ARR11(3) --------->GLK1(2)             <---------ANAC55(2)   --------->HSFB2a(2) =============================================MADS_MADS            <----------DOF2 ------>ARR11(3) --------->CCA1(2)        <---------YAB1         --------->At4g35610   gatatcttctgaagatgagagatgctgctataccaatctgggttatgaaacatgtgacttgttgaacagctttctagaaatgctagatttagaattttga  5543500                                                                      ------>ZmHOX2a(1)                                                                      <---------HSFB2a(2)                                                                      --------->LBD16             <--                                                                      --------->HSFB2a(2)       -----                             <---------ANAC46                        <---------LBD16     <----------DOF2                             <---------ANAC58                     --------->ARR11(3)    <---------ANAC58           <---------At4g35610                                   <---------CCA1(2)      <---------ANAC58           --------->At4g35610                                  ----------->ARR10   <----------DOF2       <-----------GT1       <---------ANAC58               ----------->GT1   <-----------GT1   <----   gtttttttttttccgatgaaatggatgggttgagtgagtgtatttgtctatgagttcttacatggttatatcctggaatttttctactttgctttgaaga  5543600  Previous    Next  AGI:  At1g16180.1    Description:  TMS membrane family protein / tumour differentially expressed (TDE) family protein. similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT3G06170.1); similar to unknown [Populus trichocarpa] (GB:ABK96018.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) Range:  from: 5540899    to: 5542896    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g16190.1    Description:  DNA repair protein RAD23, putative. Identical to Putative DNA repair protein RAD23-2 (RAD23-2) [Arabidopsis Thaliana] (GB:Q84L32;GB:Q9S9L8;GB:Q9SA20); similar to RAD23, damaged DNA binding [Arabidopsis thaliana] (TAIR:AT1G79650.2); similar to Rad23-3Ai [synthetic construct] (GB:ABG89119.1); contains InterPro domain Heat shock chaperonin-binding (InterPro:IPR006636); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterP Range:  from: 5543146    to: 5546097    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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