Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <----------DOF2     --------->ARR14(2)                                              --------->ATHB12     ------->TEIL                                                    <---------ICU4     <---------ARR11(1)                                              -------->ATHB1     --------->GLK1(2)                                              <---------YAB1               ----     <---------ARR14(2)                                       --------->AtMYB61                 <----    <---------CCA1(2)           <---------DAG2              ------>NtERF2 ----------->GT1      <-----    <---------ARR14(1)          <----------DOF2            --------->RAP2.6(2)             --------->ARR11(3) --->DOF2                    <---------YAB1               --------->MYB46(3)               <---------ARR11(3) -AHL20(2)           <----------DOF2         <---------AHL20(2)   --------->YAB1       ---------->DOF2   gcattcgaatctttaagttatctctttgtttatgctttttgttttatatttttgttaatagccaccaaaaatcattgagtaaaaaaaaaaaaagatttat  5469200                         <---------ARR11(3)                       <---------YAB1                       --------->ICU4         <----------DOF2--------->YAB1       --------->At4g35610<---------YAB1                                           <---------ATHB12   <-----------GT1   --------->YAB1                                   <---------MYB52(2)<----------DOF2  <-----------GT1   --------->ICU4                     <---------YAB1--------->ANAC58<---------ARR11(3) <---------AHL20(2) XXXXXXXXXXXXXXXXXXXX>MIR823        <---------TOE2(3)        <---------WRKY38(1) ----->YAB1     --------->AHL20(2)                     <---------TOE1(3) >>>>>>>>>MYB98------>ZmHOX2a(2) -----YAB1      <---------AHL20(2)                --------->ANAC58   --------->ANAC58--------->ARR11(3) ------GT1 <---------YAB1--------->ARR11(3)       --------->ANAC58   ----------->GT1--------->YAB1   cattttatcagctttgattaaaatgatgatcatacaagtttgtgggtttggcaagttaagattatttgggcaagtaacatagtcaatgatctttttttaa  5469300                                                                                      <---------ZAT18                                             ---------->DOF2                          --------->ZAT18                                         --------->AHL20(2)                  <---------AHL20(2)                                ---------->DOF2                          <------ZmHOX2a(1)                             --------->TOE2(3)                  ================HOX2a_HOX2a    ------               ----------->GT1  --------->MYB52(1)   ---------->DOF2   <---------TOE2(3)       ------             ---------->DOF2 --------->TOE1(3)   ---------->DOF2<------ZmHOX2a(2) <-----------RAV1(1)   aaggtttcttcttgggaaagaaaaatgagaaccctaaaggaaataaaaaaagaaagaaagaacacgatcaatttaggatttattttggtgcagaaacaag  5469400                                                                                       <---------AHL20(2)                                                                                      <---------AHL20(1)                                  <------ZmHOX2a(1)                                   --------->AHL20(2)                               <---------At4g35610                                    <---------AHL20(2)                    <---------AHL20(2)                                          --------->YAB1                   --------->AHL20(2)                                         <---------WOX13(1)        <---------ANAC46    <-------TEIL                                     <------------CBF --->ANAC58        <---------ATHB12                                         --------->ATHB12     <--- --->ANAC58  ------------------------>ANAC81                          --------->AHL20(2)      <------   aaaacttgtggcgaagagctaataaatagattcagaggagaaatagagagagacagagagcgagggacaaaaaaaaatcgattgataatttttttcggca  5469500                             <---------MYB52(1)                            --------->LBD16                           <---------ANAC55(2)                           --------->TOE2(3)                           --------->ANAC46                        <---------ARR14(2)                   <---------AHL20(2)                <---------AHL20(1)  ------>ZmHOX2a(1)   ----------->GT1 --------->AHL20(2)   ---------->DOF2                        --------->ARR14(2)  <---------HSFB2a(2)   --------->ARR14(2)                      <<<<<<<<<TBF1  <---------ARR14(2) ----------->GT1--------->AHL20(2) --------->TOE1(3)   ---------->ID1   ------>ZmHOX2a(1) ---NtERF2  <---------YAB1 --------->ANAC55(2)   ------>ZmHOX2a(1)     <---------ALFIN1             - ---At4g35610   --------->AHL20(1) --------->TOE2(3)*TSS     <<<<<<<<<TBF1 --------->LBD16       ----   gagtcgagaaaattttgatatattaatatccgtaattccttaaaaagcctcctcttcgtcttcttcttcttctcctccccagtttcgcatcattctcttc  5469600                                                 --------->LBD16                                                --------->HSFB2a(2)                                                <---------HSFB2a(2)                                        <---------ATERF1(1)                                        ------>NtERF2                                       --------->DEAR3(1)                                       --------->RAP2.6(2)             --------->At4g35610       --------->RAP2.3(3)             ------>ZmHOX2a(1)         --------->RAP2.3(2)         --------->ARR14(2)           --------->ERF1        --------->bZIP60(2)           --------->ATERF1(1)        <---------ALFIN1              --------->RAP2.3(1)      ----------->RAV1(1)            <---------ATERF1(1)      <---------ALFIN1            <-----------ARR10    <-----------HVH21             <---------ARR14(2)   ------->GAMYB                  --------->GLK1(2)                                                <-   --------->DEAR3(1)             --------->ARR14(2)                                              <--   --------->RAP2.6(2)           <---------GLK1(2)     --------->RVE1(1)                    <-------TEIL   --------->ANAC46        <---------LBD16     <---------LBD16                          <---------TOE1(2)  <------------AtMYB77   --------->GLK1(2)<---------DAG2                                --------->LBD16  --------->MYB46(3) --------->TOE2(3)--------->ORA47(2)<---------ARR11(3)         --------->GLK1(1) -------->ARR14(2)   ----------------->AG<------NtERF2 --------->CCA1(1)           <---------GLK1(1) ----->HSFB2a(2)     --------->TOE1(3)--------->DEAR4(2)--------->ARR11(3)  --------->MYB52(2)   ----   gataaccgccacatcctctgaaaccctaatctggagaatcgccgccttctccagaaaatatctatttctataccttgttcgtttgatttccaggttcgaa  5469700           <---------CCA1(2)        ------>ZmHOX2a(1)     ------>NtERF2    --------->DEAR3(1)    <---------ALFIN1  --------->ABI4(1)     --------->LBD16  <---------ATERF1(1)  <---------ANAC55(1)  ------>NtERF2        --------->ANAC55(2)                                    <----------DOF2 <---------ALFIN1      <---------ANAC58            ------->TEIL   --------->ARR11(3) --------->DEAR3(1)    <---------ANAC58           <---------CCA1(2)      <---------MYB52(1) --------->ANAC46      <---------ANAC46     <---------ANAC58      --------->AHL20(1)       <---------WOX13(1) --------At5g28300  <---------ARR14(2)      <---------ANAC46      <---------ARR11(3)      >>>>>>>>>ARR2 ---------GT1 <-----------GT1               <---------ANAC58     --------->CCA1(2)       --------->ATHB12 ----->MYB46(3)     --------->ARR14(2)<---------AtMYB61         <---------ARR11(3)      <---------YAB1   tcaccgcctcctcgtttctccatttccgtgtttgtttgttttggtttcgtttgaatctttctgctagatatattcgttgtctttgggattttgattgttc  5469800                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                                       <---------ARR11(3)                                                       --------->AGP1                                              <----------DOF2                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           <---------ARR14(2)                                           <---------ARR11(1)                                           <-----------ARR10                                           --------->ARR11(3)                                           <---------ARR11(3)                          --------->ICU4   --------->ARR14(2)                                       -                      <---------GLK1(2)<------ZmHOX2a(2)                                            <                      --------->ARR14(2)  <---------CCA1(2)     <---------TOE1(2)                  <-                      <---------ARR14(2)  <---------ARR14(1)   >>>>>>>ZML2                       <---                      --------->ARR11(3)------>ZmHOX2a(2)<-------TEIL                            ----               <----------DOF2        --------->ARR14(2) ------>ZmHOX2a(2)                    -------              <---------ANAC58        <---------ARR14(2)<------ZmHOX2a(2)      <----------DOF2-------              <---------ANAC58    <---------LBD16      <---------AGP1 <-----------GT1  --------->WOX13(1)   ttggcattttgaaattgctttgcagatactgatgaaaccggatcggatctttctctagatccgttctaggtttatcgatttctttctatcaatctctcgc  5469900                                                                       --------->HSFB2a(2)                                                                    --------->GLK1(2)                                                                    <---------ARR14(2)       <----------DOF2            <---------YAB1                    --------->ARR14(2)             <-       <---------DAG2           --------->YAB1                  <------NtERF2                    ---- --------->LBD16               <-------TEIL                  --------->ATERF1(1)                 <--- -------->HSFB2a(2)          <---------ARR14(2)             <---------ATERF1(1)                 <---- ---------HSFB2a(2)          --------->ARR14(2)            <---------TOE1(2)        --------->ANAC58 --------LBD16           <---------At4g35610              <-----------RAV1(2)       --------->ANAC58 ------ARR14(2)       ---------->DOF2                     --------->ATERF1(1)       --------->ANAC46 ----->ARR14(2)     <---------HSFB2a(2)               <-----------HVH21<---------HSFB2a(2)      ----- -->ANAC58       --------->ARR11(3)                  =================RAV    >>>>>>>>>TBF1--------->ATHB12 -->ANAC58       <---------ARR11(3)--------->YAB1    <-----------RAV1(1)--------->LBD16  <---------YAB1   atccggatgctttttgcaagttcttgaagcggattcatcataaatcgacagagaaatgtcgcaggctccgaatccagaagaagaagacgacacgattgaa  5470000                                                                       <---------ANAC58         <---------HSFB2a(2)                                           --------->ANAC55(2)         --------->HSFB2a(2)                                           <---------ANAC58 --------->LBD16                                                       --------->ANAC46          <--- --------LBD16       --------->TOE1(3)                                 <---------ANAC55(2)     ------ ----->ARR14(2)      --------->TOE2(3)     <---------WOX13(1)       <---------MYB52(1)        <------ ------ARR14(2)--------->YAB1            --------->ATHB12       <-----------GT1          --------->GLK1(1) -----GLK1(1)  --------->TOE2(3)        <---------YAB1        <---------GLK1(1)          <---------GLK1(1) ---->GLK1(1)  --------->TOE1(3)--------->CCA1(2)             --------->GLK1(1)--------->AtLEC2<-----   atccgcgaggtctggaaccataaccttgaacaagagatggctctgattgaacaatccatcgacgatttcccttacgtagccatggacacagagttcccag  5470100  Previous    Next  AGI:  At1g15910.1    Description:  XH/XS domain-containing protein / XS zinc finger domain-containing protein. similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00380.1); similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G80790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64047.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83544.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64044.1); contains InterPro domain Region of unknown function XH (InterPro:IPR005379); contains InterPro domain Region of Range:  from: 5465330    to: 5469119    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g15920.1    Description:  CCR4-NOT transcription complex protein, putative. similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G32070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45475.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 5469552    to: 5470821    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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