Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->ANAC46                                                                                      --------->RAP2.6(3)                                                                              --------->DEAR3(1)<----                                                                              --------->AtMYB61------                                                                             --------->MYB46(3)<-----                                                                            ------>NtERF2   <xxxxxxxx                                                                      --------->HSFC1(2)    <------NtERF2                                                                      <---------HSFC1(2)------->GAMYB                                                                 --------->ANAC58    <---------DOF5.7(2)                                          --------->ANAC46       --------->ANAC58    --------->MYB52(1)                                          --------->ANAC58     <---------WRKY12    --------->DOF5.7(2)                                          --------->ANAC58     <---------WRKY38(1)<----------DOF2----                        ---------->DOF2 <---------ANAC58      --------->WRKY18(1)--------------->AGL15     <---------YAB1 --------->CCA1(2)   <---------ANAC58     <-----------HVH21<---------ALFIN1-------   attgttcatgctagtaactcagatataaaagagaatagacttacgagccatcgagccattcagggtcaaggaagttgccaccacctttaacggcagggat  5447500                         --------->ZAT2                         --------->At4g35610                         <---------At4g35610                         <---------ZAT2                        ----------->RAV1(1)                       <-----------RAV1(2)                       <------NtERF2                       ===================RAV                      --------->At4g35610                      --------->LBD16                     --------->ANAC46                     --------->RAP2.6(2)                     --------->DEAR3(1)                     ----------->RAV1(1)                   <---------ATERF1(1)                   --------->At4g35610                   <---------At4g35610   <---------GLK1(1) --------->RAP2.3(2)                                                          <--   --------->GLK1(1)--------->RAP2.3(1)                                   --------->ANAC46      -----  <---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                          --------->ANAC58    -------  --------->ARR11(3)--------->ATERF1(1)                                   --------->ANAC58    <------NtERF2 --ZmHOX2a(2)     --------->DEAR3(1)                         <---------ZAT2  --------->DEAR3(1)<----- --->ARR14(2)   --------->ZAT2               <---------ANAC58--------->GLK1(1)------>NtERF2  -------- ----ARR14(2)   <---------ZAT2----------->RAV1(1)            --------->ZAT2------>NtERF2     ------>NtERF2 xxxxxxxxxxxxxxsmallRNA(se3)--------->At4g35610------>ZmHOX2a(1)         --------->SPL7      <------- -->ZmHOX2a(2)  --------->At4g35610          <---------ANAC58<---------At4g35610            --------- -->GLK1(1)     <---------At4g35610 --------->YAB1           --------->At4g35610         <---------DEAR3(1)   ccaagatttcttaggctgagcagccgcagcagcgacaataagagttttcctgccaactctctgagctccagtgcctacgccgcttgccaatgcggtggca  5447600                                                        --------->ANAC58                                                        --------->RAP2.6(2)                                                        --------->ANAC58                                                      --------->ATERF1(1)         <---------LBD16                          --------->LBD16      <---------ANAC58                           <---------ANAC46      <---------ANAC58                       --------->ZAT2                      <-----------GT1 -------ALFIN1                               <---------ZAT2 <---------ATERF1(1)  <---------YAB1 ->NtERF2<-----------RAV1(2)     --------->ZAT18<---------LBD16          ------>ZmHOX2a(2) -->ATERF1(1)    <------ZmHOX2a(1)       <------ZmHOX2a(1) --------->DEAR3(1)   <---------AHL20(1) ----ALFIN1  --------->ALFIN1 --------->ANAC58<---------ARR14(2)        <------ZmHOX2a(2) ->ABI4(2) --------->LBD16    ------>MYB46(1)--------->At4g35610        --------->GLK1(1) --ATERF1(1)<---------MYB52(1)------>MYB83   <---------At4g35610       <---------ARR11(3) >ALFIN1------>NtERF2         --------->ANAC58--------->ARR14(2)       --------->ARR11(3)   <--------   cctctcttgcctccggtgaggaacgaagaaccaagcccactgaggacagctccggagaccgccatcgccatgagatctctaatatacttgctctgttttt  5447700                               <-------GAMYB                              <---------MYB46(3)                              --------->MYB55(2)                              --------->MYB111(2)                            <---------ANAC58                            <-------GAMYB                            <---------ANAC58                           <------MYB83                  --------->ICU4                --------->CCA1(2)                            ---------->DOF2           ----------->GT1 <---------MYB46(3)            <---------At4g35610       --------->ARR11(3)  <------MYB46(1)               --------->At4g35610    --------->ARR11(3)       <---------ARR11(3) <---------AtMYB61         <---------LBD16          <------ZmHOX2a(1) -MYB52(1)--------->ALFIN1--------->MYB59        <----------DOF2     ---------->DOF2                -   ttctctcaagatgtggagaaatgagtgtttggttgttgttctctctctctgtttttcggagcagaaagaatcaaagagaggagatttagagggacaatgt  5447800                                                                                                   --                                                                                                   --                                                                                                 <---                                                                                               <-----                                                                                               ------                                                  ----------->HVH21                      <-----------HVH21                                    <---------ANAC46                                    --------->bZIP60(2)                  --------->ANAC58  <---------ANAC58                                    --------->ANAC46         --------->GLK1(2)          <---------bZIP60(2)                            <---------ARR14(2)     --------->YAB1   <---------ARR11(3)      <---------GLK1(1)                    --------->ARR14(2) --------->ICU4   --------->ANAC58  <---------ANAC58   --------->WOX13(1)    <-----------GT1  ------- -------->ARR11(3)--------->ANAC46<-----------HVH21   *TSS   <------ZmHOX2a(1)    <---------CCA1(2)--   gagataatgagaatctatagacgaaatctcagaggctgtcgtggatagatttctgaccaattaggagtcagaaactacttcaccatatccacatcaccca  5447900                                                                                             ------->MYC3                                                                                             ------->MYC4                                                                                             <-------MYC3                                                                                             <-------MYC4                                                                                             <-------MYC2                                                                                             ------->PIF5                                                                                             ------->MYC2    <---------ALFIN1                                                                         <-------PIF5   --------->MYB46(3)                                                                       <--------  >>>>>>>>>>>>>>>>>LFY                                                                      <-------- --------->ANAC46                                                                           --------- ------->ANAC58                                                                             <-------- ------->ANAC46                                                                             --------- ------ALFIN1                                                                      --------->AHL20(2) ----ALFIN1                                                                        --------->AHL20(1) ----->RAV1(1)                                                               <------ZmHOX2a(1)      - -->MYB46(3)                    <-----------GT1 <----------DOF2--------->TOE2(3)   <---------AHL20(2) ------->ANAC58                 <---------AHL20(2)  --------->ANAC55(2)     ----------->GT1 <--------   cactcaccactgtcttattctgccaactcagtatttacatttttctaatactttacttatctaaatctaaattgtgagaggaaaataaaatgacacgtgg  5448000      --------->AHL20(2)      <---------AHL20(2)     <---------AHL20(2)     --------->AHL20(1)  --------->AHL20(2)  <---------AHL20(2) <---------AHL20(1) --------->AHL20(1) --------->AHL20(2) <---------AHL20(2)                                                           <---------TOE2(3)   --- -ANAC55(2)                                                              <---------ANAC58       <---- -TGA1a                                                           <---------ANAC58            ------- >TGA1a      <---------YAB1                                       <---------ANAC58           <------- -O2 <---------AHL20(1)                    <-----------GT1        <---------ANAC46           -------- >O2 --------->AHL20(2)                 ------->TEIL         <-----------RAV1(1)      --------->ANAC46 -------->AHL20(2)    ----------->GT1<---------ATHB12    <----------DOF2 <---------ANAC58  <---------ANAC55(2) -ANAC46  <---------AHL20(2)----------->HVH21          <------NtERF2     <---------ANAC46  --------->ANAC55(2)   aaattaatttattttcttattgaaatgtaaatgacagcaatgaatttacaaaatggctgcattatgtggcttattgcgtttagattacacattacatgat  5448100                                                             --------->GLK1(1)                                                             <---------ARR14(2)                                                        --------->LBD16                                                       <---------ANAC58                                                       <---------ANAC46                                ---------->DOF2        <---------ANAC58                  --------->MYB52(1)                            <---------AHL20(1)        <---------LBD16                  <---------MYB52(2)                           --------->AHL20(2)         <---------------------WRI1       --------->MYB46(3)                         --------->AHL20(2)<---------TOE2(3)--------->GLK1(1)    <---------At4g35610 ------>MYB52(1)     --------->AHL20(2)   <---------DOF5.7(2)--------->ARR14(2)  --------->At4g35610 -----WOX13(1)       <---------AHL20(2)   --------->MYB52(1)<---------GLK1(1) <------ZmHOX2a(1) ----- -->ATHB12          --------->AHL20(2)    <-----------GT1<------NtERF2     <------NtERF2------->GAMYB --YAB1      ----------->GT1--------->AHL20(1)  --------->AHL20(2)       <---------DEAR3(1) --------- ->ICU4    --------->MYB52(1)  <---------AHL20(2)<---------AHL20(2)     <---------LBD16<---------MYB55(2)   taactgaaaaaaaaaacgaaaatttaaaaatatataaagagaattaacgattaaatggcggggaatcccaagtaggcggaggaagctcaacaaacggttg  5448200                                                                                            <-------GAMYB                                                                                            ---------                                                                                           <---------DEAR3(2)                                                                                           <---------ATERF1(1)                                                                                           <---------MYB46(3)                                                                                           --------->MYB55(2)                                                                                          <---------DEAR3(1)                                                                                       <---------ATERF1(2)                                                                                       <---------DEAR3(1)                                                                                      --------->ATERF1(1)                                                                                      <---------LBD16                                                                                      --------->At4g35610                                                                                   --------->TGA2(2)                                                                                  <-----------HVH21                                                                                  <-----------TGA1                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC58                                                                                 --------->bZIP60(1)                                                                                 <---------bZIP60(1)                                                                                 --------->bZIP60(2)                                                                                 <---------bZIP60(2)                                                                                 <---------TGA2(1)                                                                                 --------->TGA2(1)                                                                                 <---------ANAC55(2)                                                                                 --------->O2                                                                                 <---------O2                                                                                 <---------TGA1a                        <---------ARR14(2)                                       --------->TGA1a                        --------->ARR14(2)                                       --------->ANAC46                       ----------->HVH21                                         ====================MYC_MYB                     <---------REM1(1)                                           ===================MYC_MYB                   <---------ANAC46                                              <<<<<<<<<<HY5                   <------MYB83                                                  <---------ANAC58                   <---------ANAC58                                             ----------->STF1                   <------MYB46(1)                                              <-----------STF1                   <---------ANAC58                                            <---------TGA2(2)                  <---------AtMYB61                                           ----------->TGA1                  <---------MYB46(3)        <---------MYB52(1)                ----------->HVH21                  --------->MYB111(1)---------->TaMYB80                 <---------ANAC46 <---------MYB52(1)           <---------LBD16     --------->MYB52(1)                     <---------MYB46(3)------------>AtMYB77         <-----------HVH21<---------LBD16<---------LBD16             --------->ALFIN1 <---------At4g35610         --------->ARR14(2)   --------->ARR14(2)                     <---------AtMYB61--------->DEAR3(2)   ------->TEIL   --------->MYB46(2)<---------GLK1(2)                <---------DEAR3(1)--------->DEAR3(1) ---->ATHB12 --------->LBD16  <---------ARR14(2)                    ----------------------->TaNAC69(2) -->GT1  <---------ARR14(2) --------->LBD16--------->LBD16        <---------AtMYB61----------->HVH21   atttgaacccatgtccgggtttggtgtaaccggaaacggattatccggtattgttgggatggactctattggtggtgcgaatgacgtcaccggcggttgc  5448300                           --------->DAG2                       ----------->GT1                      <------NtERF2                      --------->ALFIN1                    <---------ANAC46                    <---------O2                    <---------ANAC58                    <---------ANAC58                   <------NtERF2                   --------->ATERF1(1)                  <---------ORA47(2)                                                              <--                  <---------ERF1                                                                 <---                  ------>NtERF2                                                                  ----                  <---------RRTF1(1)                                                           <-----                  <---------RAP2.3(1)                                                          ------                 --------->ATERF1(2)                                                           ------                 <---------DEAR3(1)                                   --------->ALFIN1         <-----                 <---------ANAC46                                   --------->ALFIN1         <-------                 <---------RAP2.6(2)                    <---------HSFB2a(2) <---------ZAT14<-------GAMYB                 <---------ATERF1(2)                    --------->HSFB2a(2) <---------ARR14(2) <-----                 <---------RAP2.3(2)         ----------->GT1        <---------ANAC58      <---------MYB46(3)                 <---------RRTF1(2)         --------->ALFIN1        <---------ANAC46      <---------DEAR3(2)                 <---------RRTF1(3)       <---------ANAC46       <---------AtMYB61       <---------DEAR3(1)                 <---------RAP2.3(3) --------->ALFIN1   --------->LBD16----------->GT1   <---------At1g77200              ----------->HVH21<---------LBD16   <---------GLK1(1)  <---------ANAC58     <---------DREB2C(2)       ----------->HVH21  ---------->DOF2 <---------ANAC58    --------->ALFIN1           --------->ETT(1)   <---------GLK1(1)<---------bZIP60(2)   <---------ANAC58 <------ZmHOX2a(1)--------->ARR14(2)<------ >ATERF1(1)   <-----------RAV1(1)<------NtERF2   --------->GLK1(1)<---------MYB46(3)     <---------DEAR4(1)   catggatttgtgacctctggcggcgtggtaaagtcgggagtttggggtgggaaatctccgaggactggtggtgtggagaatactggaattgtcggtggat  5448400  Previous    Next  AGI:  At1g15820.1    Description:  LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding. similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1); similar to Lhcb6 protein [Brassica rapa subsp. pekinensis] (GB:AAT74560.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 5446457    to: 5447854    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15825.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1) Range:  from: 5448144    to: 5448524    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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